BAC Information

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BAC

Clone NameB6Ng01-271P14
Chromosome11 (Build37)
Map Location 79,773,997 - 79,930,048
singlet/doubletdoublet
Overlap geneUtp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5
Upstream geneLgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584
Downstream gene1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271P14.bB6Ng01-271P14.g
ACCGA073915GA073916
length1,131715
definitionB6Ng01-271P14.b B6Ng01-271P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,928,917 - 79,930,048)(79,773,997 - 79,774,711)
sequence
gaattcctaagctgcagtgggaaaggaaacaagtcctaagaagactactg
cagggaatgagagaacacacaagttgagatagctgtgcagagagctcgga
aatctgcagaaccatcttatcttctgccaagtctaaaattaagtactcat
gaggaaggagccatgggaaacaaatcttgagacacacggaaatctaggaa
tggcaaattcatcccttttttatttagatttttgttttcttttctttcag
agatacgctctcattatgtagccctggatggcctagaactcactatttaa
accaagctggcctcaaactcatagtggtccacatgcctcccaaatgctgg
aattaaaagcatgtgccaccttgcctgactgaattcaatctttttttttt
tttttttttggtttttcgagacagggtttctctgtatagccctggctgtc
ctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcct
gcctctgcctcccgagtgctgggattaaaggcgtgtgccaccacgcccag
cttgaatcttttgactagacagaccaaccaatatcattgctgcgagacta
gcaggggtgttcaggtgcagtcttatagagagaagcagaatcagcccagg
tctaaatgctgctaatatagcagacctgaaacaaccaaacaagttcagaa
caaaggtcaagttaaagcagacagaaatacctaggatctaacaagataaa
ctgtacaaagtctgacaggcaattggctggagagatggctcagtggccag
gagaacttatagcttttcctcggggacctatgagcatcagttcccggcac
ccacatcaggcagttcacagctgcctgtacccccaattccaggatcaaat
actttctggcatctgtaagctctacatgcaaaaggtgcacataaacgcat
gtggacacacacccaacaccttaaagaaacagaagaatataatcataaga
caggaaaagctgaaaactaactcagaaactacacagaatgaacgatatat
agacaagaatacaaacagcctataacatatttctgggtgattcgatattt
acaggaaaatgggcatgtgataactgtaaac
gaattctggatttctgtagaaaactgctgtgaagctcaccactgtctgat
ttaaaattcttgaagggagctgggcgtggtggcgcacgcctttagtccca
gcacttgggaggtagaggcaggtggatttctgagttcgaggccggcctgg
tctacaaagtgagttccagggctacacagagaaatcctgtctcgaaaaac
caaaaaaaaaaaaaattcttgaagggaattaaaaagctatagactcactc
acttgaacatagttgataaagtcttccttgagaagggttctccgatgtat
tttgtattctaggtcggaagccttcttgatgatagccctgcagagagagc
aaattacactgtgacatttgagaggttaaatgtgatttttatttgggata
taccgaaaacggacatttaacaggaacatctagttcctgaacacagttat
cttccacaggcaaagcacgcattctcttacacacttactctatgctgtta
cacacttactctatgctgttaagaacatccacatacagttttaaactttc
aggaaaatcacctcagttgccaagatcattactgttcccaccagcaaagt
aaataatgcctaatgctttttattatttatacatactaacaaagatttct
cctccaaatttaggctacttaggggcttgtcttggggtgtgtgtgtgtgt
gtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79928917_79930048
seq2: B6Ng01-271P14.b_49_1179 (reverse)

seq1  GTTTCCAGTTATCACATGCCCCATTTTCCTGTAAATATCTGATCACACAG  50
      |||| ||||||||||||| ||||||||||||||||||||  ||||| |||
seq2  GTTTACAGTTATCACATG-CCCATTTTCCTGTAAATATCGAATCACCCAG  49

seq1  -AATATGGTTATA-GCTGTTTTGTTATTCTTGTCTATATATCTGTCA-TC  97
       ||||| |||||| |||||||   ||||||||||||||||||  ||| ||
seq2  AAATAT-GTTATAGGCTGTTT--GTATTCTTGTCTATATATCGTTCATTC  96

seq1  TGTGTAGTTTCTGAGTTAGTTTTCAGCTTTTCCTGTCTTATGGATTATAT  147
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGTAGTTTCTGAGTTAGTTTTCAGCTTTTCCTGTCTTAT-GATTATAT  145

seq1  TCTTCTGTTTCTTT-AGGTGTTGGGTGTGTGTCCACATGCGTTTATGTGC  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTTCTTTAAGGTGTTGGGTGTGTGTCCACATGCGTTTATGTGC  195

seq1  ACCTTTTGCATGTAGAGCTTACAGATGCCAGAAAGTATTTGATCCCTGGA  246
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCTTTTGCATGTAGAGCTTACAGATGCCAGAAAGTATTTGAT-CCTGGA  244

seq1  ATTGGGGGTACAGGCAGCTGTGAACTGCCTGATGTGGGTGCCGGGAACTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGTACAGGCAGCTGTGAACTGCCTGATGTGGGTGCCGGGAACTG  294

seq1  ATGCTCATAGGTCCCCGAGG-AAAGCTATAAGTTCTCCTGGCCACTGAGC  345
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGCTCATAGGTCCCCGAGGAAAAGCTATAAGTTCTCCTGGCCACTGAGC  344

seq1  CATCTCTCCAGCCAATTGCCTGTCAGACTTTGTACAGTTTATCTTGTTAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCAGCCAATTGCCTGTCAGACTTTGTACAGTTTATCTTGTTAG  394

seq1  ATCCTAGGTATTTCTGTCTGCTTTAACTTGACCTTTGTTCTGAACTTGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGTATTTCTGTCTGCTTTAACTTGACCTTTGTTCTGAACTTGTT  444

seq1  TGGTTGTTTCAGGTCTGCTATATTAGCAGCATTTAGACCTGGGCTGATTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTTCAGGTCTGCTATATTAGCAGCATTTAGACCTGGGCTGATTC  494

seq1  TGCTTCTCTCTATAAGACTGCACCTGAACACCCCTGCTAGTCTCGCAGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCTCTATAAGACTGCACCTGAACACCCCTGCTAGTCTCGCAGCA  544

seq1  ATGATATTGGTTGGTCTGTCTAGTCAAAAGATTCAAGCTGGGCGTGGTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTGGTTGGTCTGTCTAGTCAAAAGATTCAAGCTGGGCGTGGTGG  594

seq1  CACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTG  644

seq1  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT  694

seq1  ATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAGAT  744

seq1  TGAATTCAGTCAGGCAAGGTGGCACATGCTTTTAATTCCAGCATTTGGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAGTCAGGCAAGGTGGCACATGCTTTTAATTCCAGCATTTGGGA  794

seq1  GGCATGTGGACCACTATGAGTTTGAGGCCAGCTTGGTTTAAATAGTGAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGGACCACTATGAGTTTGAGGCCAGCTTGGTTTAAATAGTGAGT  844

seq1  TCTAGGCCATCCAGGGCTACATAATGAGAGCGTATCTCTGAAAGAAAAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCCATCCAGGGCTACATAATGAGAGCGTATCTCTGAAAGAAAAGA  894

seq1  AAACAAAAATCTAAATAAAAAAGGGATGAATTTGCCATTCCTAGATTTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATCTAAATAAAAAAGGGATGAATTTGCCATTCCTAGATTTCC  944

seq1  GTGTGTCTCAAGATTTGTTTCCCATGGCTCCTTCCTCATGAGTACTTAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTCAAGATTTGTTTCCCATGGCTCCTTCCTCATGAGTACTTAAT  994

seq1  TTTAGACTTGGCAGAAGATAAGATGGTTCTGCAGATTTCCGAGCTCTCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTTGGCAGAAGATAAGATGGTTCTGCAGATTTCCGAGCTCTCTG  1044

seq1  CACAGCTATCTCAACTTGTGTGTTCTCTCATTCCCTGCAGTAGTCTTCTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTATCTCAACTTGTGTGTTCTCTCATTCCCTGCAGTAGTCTTCTT  1094

seq1  AGGACTTGTTTCCTTTCCCACTGCAGCTTAGGAATTC  1132
      |||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGTTTCCTTTCCCACTGCAGCTTAGGAATTC  1131

seq1: chr11_79773997_79774711
seq2: B6Ng01-271P14.g_69_783

seq1  GAATTCTGGATTTCTGTAGAAAACTGCTGTGAAGCTCACCACTGTCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATTTCTGTAGAAAACTGCTGTGAAGCTCACCACTGTCTGAT  50

seq1  TTAAAATTCTTGAAGGGAGCTGGGCGTGGTGGCGCACGCCTTTAGTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTCTTGAAGGGAGCTGGGCGTGGTGGCGCACGCCTTTAGTCCCA  100

seq1  GCACTTGGGAGGTAGAGGCAGGTGGATTTCTGAGTTCGAGGCCGGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGTAGAGGCAGGTGGATTTCTGAGTTCGAGGCCGGCCTGG  150

seq1  TCTACAAAGTGAGTTCCAGGGCTACACAGAGAAATCCTGTCTCGAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTGAGTTCCAGGGCTACACAGAGAAATCCTGTCTCGAAAAAC  200

seq1  CAAAAAAAAAAAAAATTCTTGAAGGGAATTAAAAAGCTATAGACTCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAATTCTTGAAGGGAATTAAAAAGCTATAGACTCACTC  250

seq1  ACTTGAACATAGTTGATAAAGTCTTCCTTGAGAAGGGTTCTCCGATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACATAGTTGATAAAGTCTTCCTTGAGAAGGGTTCTCCGATGTAT  300

seq1  TTTGTATTCTAGGTCGGAAGCCTTCTTGATGATAGCCCTGCAGAGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTCTAGGTCGGAAGCCTTCTTGATGATAGCCCTGCAGAGAGAGC  350

seq1  AAATTACACTGTGACATTTGAGAGGTTAAATGTGATTTTTATTTGGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACACTGTGACATTTGAGAGGTTAAATGTGATTTTTATTTGGGATA  400

seq1  TACCGAAAACGGACATTTAACAGGAACATCTAGTTCCTGAACACAGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAAAACGGACATTTAACAGGAACATCTAGTTCCTGAACACAGTTAT  450

seq1  CTTCCACAGGCAAAGCACGCATTCTCTTACACACTTACTCTATGCTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAGGCAAAGCACGCATTCTCTTACACACTTACTCTATGCTGTTA  500

seq1  CACACTTACTCTATGCTGTTAAGAACATCCACATACAGTTTTAAACTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTACTCTATGCTGTTAAGAACATCCACATACAGTTTTAAACTTTC  550

seq1  AGGAAAATCACCTCAGTTGCCAAGATCATTACTGTTCCCACCAGCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATCACCTCAGTTGCCAAGATCATTACTGTTCCCACCAGCAAAGT  600

seq1  AAATAATGCCTAATGCTTTTTATTATTTATACATACTAACAAAGATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGCCTAATGCTTTTTATTATTTATACATACTAACAAAGATTTCT  650

seq1  CCTCCAAATTTAGGCTACTTAGGGGCTTGTCTTGGGGTGTGTGTGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAATTTAGGCTACTTAGGGGCTTGTCTTGGGGTGTGTGTGTGTGT  700

seq1  GTGTGTGTGTGTATG  715
      |||||||||||| ||
seq2  GTGTGTGTGTGTGTG  715