BAC Information

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BAC

Clone NameB6Ng01-272I11
Chromosome11 (Build37)
Map Location 69,209,028 - 69,357,473
singlet/doubletdoublet
Overlap geneLsmd1, Tmem88, Jmjd3, Dnahc2
Upstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1
Downstream geneEfnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272I11.bB6Ng01-272I11.g
ACCGA074332GA074333
length828775
definitionB6Ng01-272I11.b B6Ng01-272I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,356,647 - 69,357,473)(69,209,028 - 69,209,797)
sequence
gaattcaccagccagttctttctctagcctcttccttatttcaagtgttt
ctggttgttcccaccccactgtagagggtttgatctcttcctttttccta
ttttcaccctgggtggcaaaacaaatagtgtttttcttccattaagccca
tcaccatggagacccagcctgcttcgccaccctttgattcctaagcccgg
ctgatgcgttccaccatctgttgaaagctcctgtgttttcttcctcagct
tggcagagacttggtagattgtggaggttcaggttcagggtgacaggaaa
agaagcctacatggagggaacaaagagctgcctcttgtggagttgatcct
ggagccagagtggttggaggggttggggtcttggttgctgtcggttgctt
tccctttagatcctgtccaacggcctgaggctgtgagccaggtgtagacc
tcaccttttaaaacgcggggcttgttggtattgctagtgtcctgtaagga
tgaagagaaatagaatcttctcctgttgacttctaaaattttatttaata
agtattttattattactactactattttattatatgtatagttgttttgc
ctgaatgttggtccgagcaccccatgccatatatctggtggaggccagaa
catcagattcccctggggctccagtgtagatggtgagcccccacttggct
gctgaaatcaaacctagttctctggaagagaaagcagtgctcttaaccat
gaaataatctctccagcccctaattatttaaatatcttgtggagggatgg
ggtgagccctgctcatatcatggtgcat
gaattcattcttagaggaaatgaagacagtccgtttcataacggagtgta
ggctagatgagttaggggtaacagaaagtatcgacgaggagactagaata
gagggttttttaatcaccagatttcaggcgtttaaaagctgtttaagcaa
ttgcaggtaaagttctcgcgatattcttctcgtagcccagtaggcatgta
gggacctggcatgaaataaaatctcgcgagatctgcagtggcggaaccgg
aggcgaggaggaattgtgatctcacgaaagcgcttgggagcactcgcgag
atctgacgcgccgatcccccaaaacgctcttaggaagtttaaggcccaaa
agaggtcccagggccaatggccggagctgggccgaccatgctactacgag
aggagaatggctgttgcagtcggcgtcagagcagctccagcgccggggtt
agcgtgggcttggtttctggacgagcagtcggggagcgacaccgggcggg
gaggggaaagggggtggcgaggttggaaaggagaactacaattcccagca
gcccacgggcttctggcagcgccgcgagggcagctgggaactgtggtttc
ctttgggcgtgctgcccgatcctaggtgtctgagtgcttgtcctgcccta
gcaggactctgatggggaacaggaggactcgccggccacgcgtgcacggc
agcaactagaggcattgctcaacaagaccatgcgtatccttatgacagat
ggaaaggacactagtcggcttgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69356647_69357473
seq2: B6Ng01-272I11.b_44_871 (reverse)

seq1  ATGCACCATGATATGAGCA-GGCTCA-CCCATCCCTCCACAAGATAATTA  48
      ||||||||||||||||||| |||||| ||||||||||||||||||| |||
seq2  ATGCACCATGATATGAGCAGGGCTCACCCCATCCCTCCACAAGATATTTA  50

seq1  AATAATTAGGGGCTGGAGAGATTATTTCATGGTTAAGAGCACTGCTTTCT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAGGGGCTGGAGAGATTATTTCATGGTTAAGAGCACTGCTTTCT  100

seq1  CTTCCAGAGAACCTAGGTTTGATTTCAGCAGCCAAGTGGGGGCTCACCAT  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGAA-CTAGGTTTGATTTCAGCAGCCAAGTGGGGGCTCACCAT  149

seq1  CTACACTGGAGCCCCAGGGGAATCTGATGTTCTGGCCTCCACCAGATATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGGAGCCCCAGGGGAATCTGATGTTCTGGCCTCCACCAGATATA  199

seq1  TGGCATGGGGTGCTCGGACCAACATTCAGGCAAAACAACTATACATATAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGGGTGCTCGGACCAACATTCAGGCAAAACAACTATACATATAA  249

seq1  TAAAATAGTAGTAGTAATAATAAAATACTTATTAAATAAAATTTTAGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTAGTAGTAATAATAAAATACTTATTAAATAAAATTTTAGAAG  299

seq1  TCAACAGGAGAAGATTCTATTTCTCTTCATCCTTACAGGACACTAGCAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGAGAAGATTCTATTTCTCTTCATCCTTACAGGACACTAGCAAT  349

seq1  ACCAACAAGCCCCGCGTTTTAAAAGGTGAGGTCTACACCTGGCTCACAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAAGCCCCGCGTTTTAAAAGGTGAGGTCTACACCTGGCTCACAGC  399

seq1  CTCAGGCCGTTGGACAGGATCTAAAGGGAAAGCAACCGACAGCAACCAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCGTTGGACAGGATCTAAAGGGAAAGCAACCGACAGCAACCAAG  449

seq1  ACCCCAACCCCTCCAACCACTCTGGCTCCAGGATCAACTCCACAAGAGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACCCCTCCAACCACTCTGGCTCCAGGATCAACTCCACAAGAGGC  499

seq1  AGCTCTTTGTTCCCTCCATGTAGGCTTCTTTTCCTGTCACCCTGAACCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGTTCCCTCCATGTAGGCTTCTTTTCCTGTCACCCTGAACCTG  549

seq1  AACCTCCACAATCTACCAAGTCTCTGCCAAGCTGAGGAAGAAAACACAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCACAATCTACCAAGTCTCTGCCAAGCTGAGGAAGAAAACACAGG  599

seq1  AGCTTTCAACAGATGGTGGAACGCATCAGCCGGGCTTAGGAATCAAAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCAACAGATGGTGGAACGCATCAGCCGGGCTTAGGAATCAAAGGG  649

seq1  TGGCGAAGCAGGCTGGGTCTCCATGGTGATGGGCTTAATGGAAGAAAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAAGCAGGCTGGGTCTCCATGGTGATGGGCTTAATGGAAGAAAAAC  699

seq1  ACTATTTGTTTTGCCACCCAGGGTGAAAATAGGAAAAAGGAAGAGATCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGTTTTGCCACCCAGGGTGAAAATAGGAAAAAGGAAGAGATCAA  749

seq1  ACCCTCTACAGTGGGGTGGGAACAACCAGAAACACTTGAAATAAGGAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTACAGTGGGGTGGGAACAACCAGAAACACTTGAAATAAGGAAGA  799

seq1  GGCTAGAGAAAGAACTGGCTGGTGAATTC  827
      |||||||||||||||||||||||||||||
seq2  GGCTAGAGAAAGAACTGGCTGGTGAATTC  828

seq1: chr11_69209028_69209797
seq2: B6Ng01-272I11.g_66_840

seq1  GAATTCATTCTTAGAGGAAATGAAGACAGTCCGTTTCATAACGGAGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTAGAGGAAATGAAGACAGTCCGTTTCATAACGGAGTGTA  50

seq1  GGCTAGATGAGTTAGGGGTAACAGAAAGTATCGACGAGGAGACTAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGATGAGTTAGGGGTAACAGAAAGTATCGACGAGGAGACTAGAATA  100

seq1  GAGGGTTTTTTAATCACCAGATTTCAGGCGTTTAAAAGCTGTTTAAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTTTTAATCACCAGATTTCAGGCGTTTAAAAGCTGTTTAAGCAA  150

seq1  TTGCAGGTAAAGTTCTCGCGATATTCTTCTCGTAGCCCAGTAGGCATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTAAAGTTCTCGCGATATTCTTCTCGTAGCCCAGTAGGCATGTA  200

seq1  GGGACCTGGCATGAAATAAAATCTCGCGAGATCTGCAGTGGCGGAACCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGGCATGAAATAAAATCTCGCGAGATCTGCAGTGGCGGAACCGG  250

seq1  AGGCGAGGAGGAATTGTGATCTCACGAAAGCGCTTGGGAGCACTCGCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAGGAGGAATTGTGATCTCACGAAAGCGCTTGGGAGCACTCGCGAG  300

seq1  ATCTGACGCGCCGATCCCCCAAAACGCTCTTAGGAAGTTTAAGGCCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACGCGCCGATCCCCCAAAACGCTCTTAGGAAGTTTAAGGCCCAAA  350

seq1  AGAGGTCCCAGGGCCAATGGCCGGAGCTGGGCCGACCATGCTACTACGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCCAGGGCCAATGGCCGGAGCTGGGCCGACCATGCTACTACGAG  400

seq1  AGGAGAATGGCTGTTGCAGTCGGCGTCAGAGCAGCTCCAGCGCCGGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATGGCTGTTGCAGTCGGCGTCAGAGCAGCTCCAGCGCCGGGGTT  450

seq1  AGCGTGGGCTTGGTTTCTGGACGAGCAGTCGGGGAGCGACACCGGGCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGGGCTTGGTTTCTGGACGAGCAGTCGGGGAGCGACACCGGGCGGG  500

seq1  GAGGGGAAAGGGGGTGGCGAGGTTGGAAAGGAGAACTACAATTCCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAAGGGGGTGGCGAGGTTGGAAAGGAGAACTACAATTCCCAGCA  550

seq1  GCCCACGGGCTTCTGGCAGCGCCGCGAGGGCAGCTGGGAACTGTGGTT--  598
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GCCCACGGGCTTCTGGCAGCGCCGCGAGGGCAGCTGGGAACTGTGGTTTC  600

seq1  CCTTGGGCGTGCTG-CCGATCCTAGGTGTCTGAGTGCTTGTCCTGCCCTA  647
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCGTGCTGCCCGATCCTAGGTGTCTGAGTGCTTGTCCTGCCCTA  650

seq1  GCAGGACTCTGATGGGGAACAGGAGGACTCGCCGGCCACGCGTGCACGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTCTGATGGGGAACAGGAGGACTCGCCGGCCACGCGTGCACGGC  700

seq1  AGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCGTATGACAGAT  747
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCTTATGACAGAT  750

seq1  GG-AAGGACACTAGTCGGC-TGCTT  770
      || |||||||||||||||| |||||
seq2  GGAAAGGACACTAGTCGGCTTGCTT  775