BAC Information

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BAC

Clone NameB6Ng01-273J11
Chromosome11 (Build37)
Map Location 22,451,482 - 22,603,150
singlet/doubletdoublet
Overlap geneLOC100042827
Upstream geneMdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17
Downstream geneLOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273J11.bB6Ng01-273J11.g
ACCGA075126GA075127
length1,091403
definitionB6Ng01-273J11.b B6Ng01-273J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,451,482 - 22,452,567)(22,602,742 - 22,603,150)
sequence
gaattctctgcctgtcagtccttgacacgtgtgacacgggcatcaggtga
tcaggtgagagttggtgggggcattactgctgcagtggttggtgttcccc
tgtacatggtccaggtgaggaagtgacatgcatccctccatcttgttgtc
caacaagttcttgggcctggtttccttgatatggtctaactacacccatt
gtcctacagtctcaattcaccttaaagagctttataaggtggtgccttcc
tactctaaggagaaaccttccatcagacttctacaggggtggtgccagat
aaatagtgtccatgtgtccacccatgtgcaaagtcatcctccagtctcaa
aatggagtcaaaaggaaaggcacagcctggtctctaacttctgcttacat
gtctctttatttgaatcagtgaaaattataagtttttaaaacttatatag
aatcacaaggttttaagaataaagaaaactttatccatacttctactacc
ctaaaatagcaaatattgccaaatgtcttgtttcactgagaatttttaat
gctattttagggcatagttgtggatgggagagaggactcaatagacaaag
gcacatgccgccgaagctcacagcctgaatttgatccctaggatctacac
tctgccttccacagacacagatataaattagaatgtagtttttgaaagta
agagctggatattctggagacttttatcttctacatgatagaaggacccc
caaaatgtcctctaattttgacacaaacagaactggtacatgtacacaca
ggcacatgcacacacagagcaatagacagacagagaaatagatgtgatta
aaatttatttcattaaaaagaagagtagttgtggagcagcattgttgcac
gtaactgcggtactaggaaggcttagcataaatttctgagttcagcctga
gctctatggggagagtctttcccacctcccactcaaaagcaagtgatttt
aaaaaacaatgggtacatgccctttcatcgcagcactcagaaggcaggac
tctaataattctagccagtcaagggctacacagtgataccc

ccaagaccaccatgactgtgatcttagatttggtggttggtttttcccag
gatgtagacaagaaactgaagacctttgtccaggatgaaagggaagttgt
gcccagacaccgtcttcagtggatgaactgggattttcaactgggctttg
tgagcctgggtcccttcattacaatagttgcagtggagtaggttaggatt
tggtgccagggtgcttgctcctgagggcaatctgtcctccagtgtcacca
ctgactgagactgtgttagtgcctgggattagggcagccctgaacccact
gtcttggttgtatctgaagcaggtcccagagagcttagtccacagattac
tctctctctctctctctctctctctctctctctctctctctctctctctc
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_22451482_22452567
seq2: B6Ng01-273J11.b_45_1135

seq1  GAATTCTCTGCCTGTCAGTCCTTGACACGTGTGACACGGGCATCAGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCTGTCAGTCCTTGACACGTGTGACACGGGCATCAGGTGA  50

seq1  TCAGGTGAGAGTTGGTGGGGGCATTACTGCTGCAGTGGTTGGTGTTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGAGAGTTGGTGGGGGCATTACTGCTGCAGTGGTTGGTGTTCCCC  100

seq1  TGTACATGGTCCAGGTGAGGAAGTGACATGCATCCCTCCATCTTGTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGGTCCAGGTGAGGAAGTGACATGCATCCCTCCATCTTGTTGTC  150

seq1  CAACAAGTTCTTGGGCCTGGTTTCCTTGATATGGTCTAACTACACCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTTCTTGGGCCTGGTTTCCTTGATATGGTCTAACTACACCCATT  200

seq1  GTCCTACAGTCTCAATTCACCTTAAAGAGCTTTATAAGGTGGTGCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACAGTCTCAATTCACCTTAAAGAGCTTTATAAGGTGGTGCCTTCC  250

seq1  TACTCTAAGGAGAAACCTTCCATCAGACTTCTACAGGGGTGGTGCCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAAGGAGAAACCTTCCATCAGACTTCTACAGGGGTGGTGCCAGAT  300

seq1  AAATAGTGTCCATGTGTCCACCCATGTGCAAAGTCATCCTCCAGTCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGTCCATGTGTCCACCCATGTGCAAAGTCATCCTCCAGTCTCAA  350

seq1  AATGGAGTCAAAAGGAAAGGCACAGCCTGGTCTCTAACTTCTGCTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTCAAAAGGAAAGGCACAGCCTGGTCTCTAACTTCTGCTTACAT  400

seq1  GTCTCTTTATTTGAATCAGTGAAAATTATAAGTTTTTAAAACTTATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTATTTGAATCAGTGAAAATTATAAGTTTTTAAAACTTATATAG  450

seq1  AATCACAAGGTTTTAAGAATAAAGAAAACTTTATCCATACTTCTACTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAGGTTTTAAGAATAAAGAAAACTTTATCCATACTTCTACTACC  500

seq1  CTAAAATAGCAAATATTGCCAAATGTCTTGTTTCACTGAGAATTTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAGCAAATATTGCCAAATGTCTTGTTTCACTGAGAATTTTTAAT  550

seq1  GCTATTTTAGGGCATAGTTGTGGATGGGAGAGAGGACTCAATAGACAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTAGGGCATAGTTGTGGATGGGAGAGAGGACTCAATAGACAAAG  600

seq1  GCACATGCCGCCGAAGCTCACAGCCTGAATTTGATCCCTAGGATCTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCCGCCGAAGCTCACAGCCTGAATTTGATCCCTAGGATCTACAC  650

seq1  TCTGCCTTCCACAGACACAGATATAAATTAGAATGTAGTTTTTGAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCCACAGACACAGATATAAATTAGAATGTAGTTTTTGAAAGTA  700

seq1  AGAGCTGGATATTCTGGAGACTTTTATCTTCTACATGATAGAAGGACCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGATATTCTGGAGACTTTTATCTTCTACATGATAGAAGGACCCC  750

seq1  CAAAATGTCCTCTAATTTTGACACAAACAGAACTGGTACATGTACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTCCTCTAATTTTGACACAAACAGAACTGGTACATGTACACACA  800

seq1  GGCACATGCACACACAGAGCAATAGACAGACAGAGAAATAGATGTGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATGCACACACAGAGCAATAGACAGACAGAGAAATAGATGTGATTA  850

seq1  AAATTTATTTCATTAAAAAGAAGAGTAGTTGTGGAGCAGGCATTGTTGCA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAATTTATTTCATTAAAAAGAAGAGTAGTTGTGGAGCA-GCATTGTTGCA  899

seq1  CGTAACTGCGGTACTAGGAAGGCTTAGGCATAAATTTCTGAGTCCAGCCT  950
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  CGTAACTGCGGTACTAGGAAGGCTTA-GCATAAATTTCTGAGTTCAGCCT  948

seq1  GAGCTCTATGGGGAGAGTC-TTCCCACCTCCCACTCAAAAGCAAGTGATT  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGCTCTATGGGGAGAGTCTTTCCCACCTCCCACTCAAAAGCAAGTGATT  998

seq1  TT-AAAAACA--TGGTACATG-CCTTTCATCGCAGCACTCAGGAGGCA-G  1044
      || |||||||   |||||||| |||||||||||||||||||| ||||| |
seq2  TTAAAAAACAATGGGTACATGCCCTTTCATCGCAGCACTCAGAAGGCAGG  1048

seq1  ACTCTATAAATTCTAGCCAGTC-AGGGCTACACAGTGATACCC  1086
      ||||||  |||||||||||||| ||||||||||||||||||||
seq2  ACTCTAATAATTCTAGCCAGTCAAGGGCTACACAGTGATACCC  1091


seq1: chr11_22602742_22603150
seq2: B6Ng01-273J11.g_68_476 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGTAATCTGTGGACTAAGCTCTCTGGGACCTGCTTCAGATACAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATCTGTGGACTAAGCTCTCTGGGACCTGCTTCAGATACAACCAA  100

seq1  GACAGTGGGTTCAGGGCTGCCCTAATCCCAGGCACTAACACAGTCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGGTTCAGGGCTGCCCTAATCCCAGGCACTAACACAGTCTCAGT  150

seq1  CAGTGGTGACACTGGAGGACAGATTGCCCTCAGGAGCAAGCACCCTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGACACTGGAGGACAGATTGCCCTCAGGAGCAAGCACCCTGGCA  200

seq1  CCAAATCCTAACCTACTCCACTGCAACTATTGTAATGAAGGGACCCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCTAACCTACTCCACTGCAACTATTGTAATGAAGGGACCCAGGC  250

seq1  TCACAAAGCCCAGTTGAAAATCCCAGTTCATCCACTGAAGACGGTGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGCCCAGTTGAAAATCCCAGTTCATCCACTGAAGACGGTGTCTG  300

seq1  GGCACAACTTCCCTTTCATCCTGGACAAAGGTCTTCAGTTTCTTGTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAACTTCCCTTTCATCCTGGACAAAGGTCTTCAGTTTCTTGTCTAC  350

seq1  ATCCTGGGAAAAACCAACCACCAAATCTAAGATCACAGTCATGGTGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGAAAAACCAACCACCAAATCTAAGATCACAGTCATGGTGGTCT  400

seq1  TGGGAATTC  409
      |||||||||
seq2  TGGGAATTC  409


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