BAC Information

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BAC

Clone NameB6Ng01-273K09
Chromosome11 (Build37)
Map Location 3,868,188 - 4,010,692
singlet/doubletdoublet
Overlap genePes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720
Downstream geneLOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273K09.bB6Ng01-273K09.g
ACCGA075169GA075170
length1,0591,112
definitionB6Ng01-273K09.b B6Ng01-273K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,868,188 - 3,869,244)(4,009,601 - 4,010,692)
sequence
gaattcactttccccacagttggacgttactcactccgtcattgctaatg
aagaattgtttgctttttcttccctaagtatgaacgaggctctgccacca
attatatcacccgaaacaaggccaggaagaagctgcagctgagcctgcct
gacttcaggtgaggttgaagaggagcaaaatcggggtccctgggagcctg
gatactgaaatgagcgcacagtgaaagctcagccacctcccagcctccct
gagctgctgtgggctctgtaatagtcttcctcaccgctttgctgggagct
gagctctgccatctgtggcctggggaggagccagaggactggttcttcac
gttgggcttttactccctttgacagaagacctgagtccttcagctctgtc
ttgtagagtcagatctagatgtctctgcagtcagtgggtccttccatcag
gctaatcctgacctctcccctgtgtgtgtgtgtgtgtttgcgtgtttacg
tgtttacgcatgtgtgtctgagcgtgtgtgtctgtgtgtgttttggttag
agatttttgttgttttgaagagaatttcttgtttgcttggttcttttatt
tgttttttttgcagggtggacattgaatcaagggcctcacataatgctac
ttaaacactctgccactaaactatattcccaagcctgtttttttctgttt
gttatgaaaaacaaactcccatagtccagactggcctttttttttttttt
ttttaaagatttatttattgttatatgtaagtacactgtcgctgtcttca
ggccctccagaagagggcgtccagatctcattacagatggttgtgagcca
ccatgtggttgctgggatttgaactcaggaccttcggaagagcagtcagt
gcctcttaaccgctgagccatctcctccagccccagactgcccttaaact
tgcgctcctcctgcctcagcctcctggagtgccaggagaacatttatgta
ccactgtgcctggctgtccctcacccctttgtcctttatatgtctggaaa
tgtggactt
gaattcccacaaagtataggaacggtgtacagggaagatctgggaatgaa
aggcagtcctttacccgaagacgcttggcttaagaagacctcactagggc
gaggaatggatctcagttggtacagcgctcacagcacactcagggcttcc
ccacccactacagcaaaaaccaccttgcattgcagcaagctgagtggaac
acgcctgcaatcccacgatctacaggtccgaggcaagagggtcttgattt
tgaagctagcctggactatatagtgagaccctagacacaagcaaaagaaa
agcaaaaactataaattattacagctggagatatcgctcagtgaaaggca
gctggcctcacacaggcaggggcctaggtttaattctcagctcaacagaa
aacccagaaagacaaagaaaaccatctcaatacattgttggagaactttt
gtttctgtgaggaccagtgagatcttattttgaactaagctacccttggg
caagtatgggggtgggggtactcctggcacagatggacccagaacccctg
cttttccaagtgtactttcaagagatcagggcgacagttcccttgctaag
acaaagactgaagacatggttcagccggtaaacagacttgccagcaaggc
tgagaacctatggggtggaggaggagagctagcgtccccaaattgtcttc
tgcactgcacactgtagcatggactcacagacacagacacagacacagac
acagacacacacacacacacacagacacacacacacacacagacacacac
acacacagacagacagacagacacactcacacacacacacacactctgag
agagagagagagagagagagagagagagagagagagaaatgtaagttttt
taaaaagaaaggaaggactgaggaccaagacggaggtggtcctcaacctt
ttccccaccccttaccccccacccacaagttgcaaaaggtatttaaaggt
ggtggggtgcctccctagcccctattatttagaatgcctcacaaaggagc
ctcaactcagtaccaggaactcctgagaaggctgggcatcacaaagaaag
aggttcaacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3868188_3869244
seq2: B6Ng01-273K09.b_46_1104

seq1  GAATTCACTTTCCCCACAGTTGGACGTTACTCACTCCGTCATTGCTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCCCCACAGTTGGACGTTACTCACTCCGTCATTGCTAATG  50

seq1  AAGAATTGTTTGCTTTTTCTTCCCTAAGTATGAACGAGGCTCTGCCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGTTTGCTTTTTCTTCCCTAAGTATGAACGAGGCTCTGCCACCA  100

seq1  ATTATATCACCCGAAACAAGGCCAGGAAGAAGCTGCAGCTGAGCCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCACCCGAAACAAGGCCAGGAAGAAGCTGCAGCTGAGCCTGCCT  150

seq1  GACTTCAGGTGAGGTTGAAGAGGAGCAAAATCGGGGTCCCTGGGAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGGTGAGGTTGAAGAGGAGCAAAATCGGGGTCCCTGGGAGCCTG  200

seq1  GATACTGAAATGAGCGCACAGTGAAAGCTCAGCCACCTCCCAGCCTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGAAATGAGCGCACAGTGAAAGCTCAGCCACCTCCCAGCCTCCCT  250

seq1  GAGCTGCTGTGGGCTCTGTAATAGTCTTCCTCACCGCTTTGCTGGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTGTGGGCTCTGTAATAGTCTTCCTCACCGCTTTGCTGGGAGCT  300

seq1  GAGCTCTGCCATCTGTGGCCTGGGGAGGAGCCAGAGGACTGGTTCTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGCCATCTGTGGCCTGGGGAGGAGCCAGAGGACTGGTTCTTCAC  350

seq1  GTTGGGCTTTTACTCCCTTTGACAGAAGACCTGAGTCCTTCAGCTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCTTTTACTCCCTTTGACAGAAGACCTGAGTCCTTCAGCTCTGTC  400

seq1  TTGTAGAGTCAGATCTAGATGTCTCTGCAGTCAGTGGGTCCTTCCATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAGTCAGATCTAGATGTCTCTGCAGTCAGTGGGTCCTTCCATCAG  450

seq1  GCTAATCCTGACCTCTCCCCTGTGTGTGTGTGTGTGTTTGCGTGTTTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCCTGACCTCTCCCCTGTGTGTGTGTGTGTGTTTGCGTGTTTACG  500

seq1  TGTTTACGCATGTGTGTCTGAGCGTGTGTGTCTGTGTGTGTTTTGGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACGCATGTGTGTCTGAGCGTGTGTGTCTGTGTGTGTTTTGGTTAG  550

seq1  AGATTTTTGTTGTTTTGAAGAGAATTTCTTGTTTGCTTGGTTCTTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTGTTGTTTTGAAGAGAATTTCTTGTTTGCTTGGTTCTTTTATT  600

seq1  TGTTTTTTTTGCAGGGTGGACATTGAATCAAGGGCCTCACATAATGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTGCAGGGTGGACATTGAATCAAGGGCCTCACATAATGCTAC  650

seq1  TTAAACACTCTGCCACTAAACTATATTCCCAAGCCTGTTTTTTTCTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACTCTGCCACTAAACTATATTCCCAAGCCTGTTTTTTTCTGTTT  700

seq1  GTTATGAAAAACAAACTCCCATAGTCCAGACTGGCCTTTTTTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  GTTATGAAAAACAAACTCCCATAGTCCAGACTGGCC---TTTTTTTTTTT  747

seq1  TTTTTTTAAAGATTTATTTATTGTTATATGTAAGTACACTGTCGCTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAGATTTATTTATTGTTATATGTAAGTACACTGTCGCTGTCT  797

seq1  TCAGGCCCTCCAGAAGAGGGCGT-CAGATCTCATTACAGATGGTTGTGAG  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAGGCCCTCCAGAAGAGGGCGTCCAGATCTCATTACAGATGGTTGTGAG  847

seq1  CCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTC  897

seq1  AGTG-CTCTTAACCGCTGAGCCATCT-CTCCAGCCCCAGACTGCCCTTAA  947
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTGCCTCTTAACCGCTGAGCCATCTCCTCCAGCCCCAGACTGCCCTTAA  947

seq1  ACTTGCGCTCCTCCTGCCTCAGCCTCCT-GAGTGCCAGGAGAACAATTAT  996
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  ACTTGCGCTCCTCCTGCCTCAGCCTCCTGGAGTGCCAGGAGAACATTTAT  997

seq1  GTACCACTGTGCCTGGCTGTCCCTCAGCCCTTTGTCCTTTATATGTCT-G  1045
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  GTACCACTGTGCCTGGCTGTCCCTCACCCCTTTGTCCTTTATATGTCTGG  1047

seq1  AAATGTTGACTT  1057
      |||||| |||||
seq2  AAATGTGGACTT  1059

seq1: chr11_4009601_4010692
seq2: B6Ng01-273K09.g_67_1178 (reverse)

seq1  CAAGTTGAACCTCT---CTTGTG-TGCCCAGCC-TCTCAGGGGTTC--TG  43
      ||||||||||||||    ||||| ||||||||| ||||||| ||||   |
seq2  CAAGTTGAACCTCTTTCTTTGTGATGCCCAGCCTTCTCAGGAGTTCCTGG  50

seq1  TACTGAGT--GGGCT-CTTTGTGA-GCA-TCTAAATAATA-GTGCT-GAG  86
      ||||||||   |||| |||||||| ||| ||||||||||| | ||| | |
seq2  TACTGAGTTGAGGCTCCTTTGTGAGGCATTCTAAATAATAGGGGCTAGGG  100

seq1  AGGCAC----CCACACTTTAATA-CTTCTGCAACTTGTGGGTGGGGGGT-  130
      ||||||    ||||  || |||| ||| ||||||||||||||||||||| 
seq2  AGGCACCCCACCACCTTTAAATACCTTTTGCAACTTGTGGGTGGGGGGTA  150

seq1  AGGGGTGGGGAAAAAGGTGAGGGACACCTCCGTCTTGGTCCTCAGTCCTT  180
      |||||||||||||| | |||||  ||||||||||||||||||||||||||
seq2  AGGGGTGGGGAAAAGGTTGAGGACCACCTCCGTCTTGGTCCTCAGTCCTT  200

seq1  CCTTTCTTTTTAAAAAACTTACATTTCTCTCTCTCTCTCTCTCTCTCTCT  230
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTTTAAAAAACTTACATTTCTCTCTCTCTCTCTCTCTCTCTCT  250

seq1  CTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGT  280
      ||||||||||||||| | ||||||||||||||||| ||||||||||||||
seq2  CTCTCTCTCTCTCTCAGAGTGTGTGTGTGTGTGTGAGTGTGTCTGTCTGT  300

seq1  CTGTCTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTCTGTGTGTGTGT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTCTGTGTGTGTGT  350

seq1  GTGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGAGTCCATGCTACA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGAGTCCATGCTACA  400

seq1  GTGTGCAGTGCAGAAGACAATTTGGGGACGCTAGCTCTCCTCCTCCACCC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGTGCAGAAGACAATTTGGGGACGCTAGCTCTCCTCCTCCACCC  450

seq1  CATAGGTTCTCAGCCTTGCTGGCAAGTCTGTTTACCGGCTGAACCATGTC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTTCTCAGCCTTGCTGGCAAGTCTGTTTACCGGCTGAACCATGTC  500

seq1  TTCAGTCTTTGTCTTAGCAAGGGAACTGTCGCCCTGATCTCTTGAAAGTA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTTTGTCTTAGCAAGGGAACTGTCGCCCTGATCTCTTGAAAGTA  550

seq1  CACTTGGAAAAGCAGGGGTTCTGGGTCCATCTGTGCCAGGAGTACCCCCA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAAAAGCAGGGGTTCTGGGTCCATCTGTGCCAGGAGTACCCCCA  600

seq1  CCCCCATACTTGCCCAAGGGTAGCTTAGTTCAAAATAAGATCTCACTGGT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATACTTGCCCAAGGGTAGCTTAGTTCAAAATAAGATCTCACTGGT  650

seq1  CCTCACAGAAACAAAAGTTCTCCAACAATGTATTGAGATGGTTTTCTTTG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGAAACAAAAGTTCTCCAACAATGTATTGAGATGGTTTTCTTTG  700

seq1  TCTTTCTGGGTTTTCTGTTGAGCTGAGAATTAAACCTAGGCCCCTGCCTG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGGTTTTCTGTTGAGCTGAGAATTAAACCTAGGCCCCTGCCTG  750

seq1  TGTGAGGCCAGCTGCCTTTCACTGAGCGATATCTCCAGCTGTAATAATTT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCCAGCTGCCTTTCACTGAGCGATATCTCCAGCTGTAATAATTT  800

seq1  ATAGTTTTTGCTTTTCTTTTGCTTGTGTCTAGGGTCTCACTATATAGTCC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTTGCTTTTCTTTTGCTTGTGTCTAGGGTCTCACTATATAGTCC  850

seq1  AGGCTAGCTTCAAAATCAAGACCCTCTTGCCTCGGACCTGTAGATCGTGG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCTTCAAAATCAAGACCCTCTTGCCTCGGACCTGTAGATCGTGG  900

seq1  GATTGCAGGCGTGTTCCACTCAGCTTGCTGCAATGCAAGGTGGTTTTTGC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAGGCGTGTTCCACTCAGCTTGCTGCAATGCAAGGTGGTTTTTGC  950

seq1  TGTAGTGGGTGGGGAAGCCCTGAGTGTGCTGTGAGCGCTGTACCAACTGA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGGTGGGGAAGCCCTGAGTGTGCTGTGAGCGCTGTACCAACTGA  1000

seq1  GATCCATTCCTCGCCCTAGTGAGGTCTTCTTAAGCCAAGCGTCTTCGGGT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATTCCTCGCCCTAGTGAGGTCTTCTTAAGCCAAGCGTCTTCGGGT  1050

seq1  AAAGGACTGCCTTTCATTCCCAGATCTTCCCTGTACACCGTTCCTATACT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTGCCTTTCATTCCCAGATCTTCCCTGTACACCGTTCCTATACT  1100

seq1  TTGTGGGAATTC  1092
      ||||||||||||
seq2  TTGTGGGAATTC  1112