BAC Information

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BAC

Clone NameB6Ng01-274I15
Chromosome11 (Build37)
Map Location 40,065,592 - 40,237,878
singlet/doubletdoublet
Overlap geneLOC100039241
Upstream genenone
Downstream geneLOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274I15.bB6Ng01-274I15.g
ACCGA075814GA075815
length1,055873
definitionB6Ng01-274I15.b B6Ng01-274I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,236,814 - 40,237,878)(40,065,592 - 40,066,464)
sequence
gaattcacttttttccttctaataacgtgtctgctgctacacctgtcaat
gagctgctttattctttgtgaatcattttctgtcacaggaatggggctgc
ttctctctcctgcccttcatgctctaccttgcctacttttcaaaaatgaa
aggcgaggaagcaatggtaattaaaatataacttttttttccttcaatca
aatgtttctacttctatttttacacttttgccagatctatttttttagat
gactttcacattctgaatgttttttttttgttgttgttgttgttgatttt
tttttttggtcttgtagagattaaacgaattaaactactctggtttcctt
caaatataaagaaatgcttgctcaatctccaaatttgaaacgtggatatg
aaacatggatgattgctacacattcctctacaaaaaaaggaggaatattt
attttggtctttaagctaattattttattttatcagcaatatcattctgc
ttatattagtaatgaaaatttgggtagtgagacccatttctattccttct
ctacctcacagcagaaagctcttcagcaaaaactctggagtccagtttga
actaggggcttggtaattggtagagatacttaaagtctagtcaagtctga
aatctttcttctatgttcctttcttctttccaacttattttgagttatta
tgcatgttctttagtgtcacaggctccaaatgttcccttgtttcttcctt
tgaccctccttctcctgatgtgtcttcccccgagaaggcagctcatggta
aggtccacatgtaggtagagttgggctttgctatttactgctagggtggc
cctggtgacactgtcttgtctacaaagcaggagagtactgatggttgtgc
ctgataatttgggatgggttataaacattcctgtattctttatgatacat
tattattagaggagaagcacaaagagactatggtcaaactattgactggg
agaaaaagagatccttaaatgattaaggctgagaacagagttagaaactg
tgaaa

gaattccaagttatagccctgccttaaaccaactgcataataaccactgg
cattgaacatcatgcatctattcccataccgaatatcaactcatttcaat
gtggctctagtttgaagatgaatgtattagagagatgacactatatcatg
ctggggtcttgtcacttgtggcacttttgaccactaaaaatggaaagaaa
aaaagtaaacttatacttatttagaatagtgagaaattatgagccttttt
attttactatgtctcatcttcttttgttttttattcaaaaaagaatcgaa
gaacctatcatcttctacacactaagtttgatttgatggctacagtgaga
acagcttagttaactttcacttcaacttttcaacttgacagaactcatac
tacatgagcagctgccatacacggagggttagtccagaaggaagactttc
cacaaggcactctccctgaatttcaggttgttcttatagcaacttactgt
gtgtgttgtattgttatcttcagaatattcatgatgatcggaaggtttga
tgaggtcagcaaattgtccgtagttgcaaaatcaataattattttgtaca
gttaacatttgaaccatgattcacagtctaaattcattatccctttctaa
ggccataaaatagaatataactcatctaaatagaacatccttaatagaag
aaagcacttatgacaatgtggggcttctggcccaagcctagctttataca
aaaattctcaggagaacatatggattagtttgccttagataaaaatagta
aataccaaatatttgagcagattttctgtttatgtttacatggtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40236814_40237878
seq2: B6Ng01-274I15.b_42_1096 (reverse)

seq1  TTTCAACAGTTTCTAACTCTG-TCTCAGCTTTAATTCATTTAAGGGATCT  49
      |||| |||||||||||||||| ||||||| |||| |||||||| ||||||
seq2  TTTC-ACAGTTTCTAACTCTGTTCTCAGCCTTAA-TCATTTAA-GGATCT  47

seq1  CTTTTTCTCCCAGGTTCAATTAGTTTGACCATAGTCCTCCTTTGTGCCTC  99
      |||||||||||||  |||| ||||||||||||||||   |||||||| ||
seq2  CTTTTTCTCCCAG--TCAA-TAGTTTGACCATAGTC--TCTTTGTGCTTC  92

seq1  TCCTCTAATAATAATGTATCATAAAGAATACAGGAATGTTTTTATAACCC  149
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  TCCTCTAATAATAATGTATCATAAAGAATACAGGAATG--TTTATAACCC  140

seq1  ATCCCAAATTATCAGGCACAACCATCAGTACTCTCCCTGCTTTGTAGACA  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCCCAAATTATCAGGCACAACCATCAGTACTCT-CCTGCTTTGTAGACA  189

seq1  AGACAGTGTCACCAGGGCCACCCTAGCAGTAAATAGCAAAGCCCAACTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGTCACCAGGGCCACCCTAGCAGTAAATAGCAAAGCCCAACTCT  239

seq1  ACCTACATGTGGACCTTACCATGAGCTGCCTTCTCGGGGGAAGACACATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATGTGGACCTTACCATGAGCTGCCTTCTCGGGGGAAGACACATC  289

seq1  AGGAGAAGGAGGGTCAAAGGAAGAAACAAGGGAACATTTGGAGCCTGTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGAGGGTCAAAGGAAGAAACAAGGGAACATTTGGAGCCTGTGA  339

seq1  CACTAAAGAACATGCATAATAACTCAAAATAAGTTGGAAAGAAGAAAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGAACATGCATAATAACTCAAAATAAGTTGGAAAGAAGAAAGGA  389

seq1  ACATAGAAGAAAGATTTCAGACTTGACTAGACTTTAAGTATCTCTACCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAGAAAGATTTCAGACTTGACTAGACTTTAAGTATCTCTACCAA  439

seq1  TTACCAAGCCCCTAGTTCAAACTGGACTCCAGAGTTTTTGCTGAAGAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAGCCCCTAGTTCAAACTGGACTCCAGAGTTTTTGCTGAAGAGCT  489

seq1  TTCTGCTGTGAGGTAGAGAAGGAATAGAAATGGGTCTCACTACCCAAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGTGAGGTAGAGAAGGAATAGAAATGGGTCTCACTACCCAAATT  539

seq1  TTCATTACTAATATAAGCAGAATGATATTGCTGATAAAATAAAATAATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTACTAATATAAGCAGAATGATATTGCTGATAAAATAAAATAATTA  589

seq1  GCTTAAAGACCAAAATAAATATTCCTCCTTTTTTTGTAGAGGAATGTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGACCAAAATAAATATTCCTCCTTTTTTTGTAGAGGAATGTGTA  639

seq1  GCAATCATCCATGTTTCATATCCACGTTTCAAATTTGGAGATTGAGCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATCCATGTTTCATATCCACGTTTCAAATTTGGAGATTGAGCAAG  689

seq1  CATTTCTTTATATTTGAAGGAAACCAGAGTAGTTTAATTCGTTTAATCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTATATTTGAAGGAAACCAGAGTAGTTTAATTCGTTTAATCTC  739

seq1  TACAAGACCAAAAAAAAAAATCAACAACAACAACAACAAAAAAAAAACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGACCAAAAAAAAAAATCAACAACAACAACAACAAAAAAAAAACAT  789

seq1  TCAGAATGTGAAAGTCATCTAAAAAAATAGATCTGGCAAAAGTGTAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGTGAAAGTCATCTAAAAAAATAGATCTGGCAAAAGTGTAAAAA  839

seq1  TAGAAGTAGAAACATTTGATTGAAGGAAAAAAAAGTTATATTTTAATTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAGAAACATTTGATTGAAGGAAAAAAAAGTTATATTTTAATTAC  889

seq1  CATTGCTTCCTCGCCTTTCATTTTTGAAAAGTAGGCAAGGTAGAGCATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTCCTCGCCTTTCATTTTTGAAAAGTAGGCAAGGTAGAGCATGA  939

seq1  AGGGCAGGAGAGAGAAGCAGCCCCATTCCTGTGACAGAAAATGATTCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGAGAGAGAAGCAGCCCCATTCCTGTGACAGAAAATGATTCACA  989

seq1  AAGAATAAAGCAGCTCATTGACAGGTGTAGCAGCAGACACGTTATTAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAGCAGCTCATTGACAGGTGTAGCAGCAGACACGTTATTAGAA  1039

seq1  GGAAAAAAGTGAATTC  1065
      ||||||||||||||||
seq2  GGAAAAAAGTGAATTC  1055


seq1: chr11_40065592_40066464
seq2: B6Ng01-274I15.g_67_939

seq1  GAATTCCAAGTTATAGCCCTGCCTTAAACCAACTGCATAATAACCACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTATAGCCCTGCCTTAAACCAACTGCATAATAACCACTGG  50

seq1  CATTGAACATCATGCATCTATTCCCATACCGAATATCAACTCATTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACATCATGCATCTATTCCCATACCGAATATCAACTCATTTCAAT  100

seq1  GTGGCTCTAGTTTGAAGATGAATGTATTAGAGAGATGACACTATATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTAGTTTGAAGATGAATGTATTAGAGAGATGACACTATATCATG  150

seq1  CTGGGGTCTTGTCACTTGTGGCACTTTTGACCACTAAAAATGGAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTCTTGTCACTTGTGGCACTTTTGACCACTAAAAATGGAAAGAAA  200

seq1  AAAAGTAAACTTATACTTATTTAGAATAGTGAGAAATTATGAGCCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAACTTATACTTATTTAGAATAGTGAGAAATTATGAGCCTTTTT  250

seq1  ATTTTACTATGTCTCATCTTCTTTTGTTTTTTATTCAAAAAAGAATCGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTATGTCTCATCTTCTTTTGTTTTTTATTCAAAAAAGAATCGAA  300

seq1  GAACCTATCATCTTCTACACACTAAGTTTGATTTGATGGCTACAGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATCATCTTCTACACACTAAGTTTGATTTGATGGCTACAGTGAGA  350

seq1  ACAGCTTAGTTAACTTTCACTTCAACTTTTCAACTTGACAGAACTCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAGTTAACTTTCACTTCAACTTTTCAACTTGACAGAACTCATAC  400

seq1  TACATGAGCAGCTGCCATACACGGAGGGTTAGTCCAGAAGGAAGACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGCAGCTGCCATACACGGAGGGTTAGTCCAGAAGGAAGACTTTC  450

seq1  CACAAGGCACTCTCCCTGAATTTCAGGTTGTTCTTATAGCAACTTACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCACTCTCCCTGAATTTCAGGTTGTTCTTATAGCAACTTACTGT  500

seq1  GTGTGTTGTATTGTTATCTTCAGAATATTCATGATGATCGGAAGGTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGTATTGTTATCTTCAGAATATTCATGATGATCGGAAGGTTTGA  550

seq1  TGAGGTCAGCAAATTGTCCGTAGTTGCAAAATCAATAATTATTTTGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAGCAAATTGTCCGTAGTTGCAAAATCAATAATTATTTTGTACA  600

seq1  GTTAACATTTGAACCATGATTCACAGTCTAAATTCATTATCCCTTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTTGAACCATGATTCACAGTCTAAATTCATTATCCCTTTCTAA  650

seq1  GGCCATAAAATAGAATATAACTCATCTAAATAGAACATCCTTAATAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAAATAGAATATAACTCATCTAAATAGAACATCCTTAATAGAAG  700

seq1  AAAGCACTTATGACAATGTGGGGCTTCTGGCCCAAGCCTAGCTTTATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTATGACAATGTGGGGCTTCTGGCCCAAGCCTAGCTTTATACA  750

seq1  AAAATTCTCAGGAGAACATATGGATTAGTTTGCCTTAGATAAAAATAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTCAGGAGAACATATGGATTAGTTTGCCTTAGATAAAAATAGTA  800

seq1  AATACCAAATATTTGAGCAGATTTTCTGTTTATGTTTACATGGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAATATTTGAGCAGATTTTCTGTTTATGTTTACATGGTGTGTGT  850

seq1  GTGTGTGTGTGTGTGTGTGTGTG  873
      |||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTG  873


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