BAC Information

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BAC

Clone NameB6Ng01-274M08
Chromosome11 (Build37)
Map Location 40,544,404 - 40,545,530
singlet/doubletsinglet
Overlap geneHmmr
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b
Downstream geneNudcd2, Ccng1, LOC100039256, LOC100039285, Hspd1, LOC100039292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274M08.bB6Ng01-274M08.g
ACCGA075988GA075989
length1,1551,153
definitionB6Ng01-274M08.b B6Ng01-274M08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacgctcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactatcggaggatccagcaatacctcctgggcat
atatccagaagatgtcccaaccggtaagaagaacacatgctccactatgt
tcatagcagccttgtttataatagccagaagctggaaagaacccagatgc
ccttcaacagaggaatggatacagaaaatgtggtacttttacacaatgga
atactactcagctattaaaaaaatgaatttatgaaattcctaggcaaatg
gatgtacctggagggtatcatcctgagtgaagtaacccaatcacaaagga
actcgcacaatatgtactcactgatcagtggatattagcccagaaactta
ggatacccaagatataagatacaacttgccaaatgcatgaaattcaagaa
gaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaaca
aaacacccatggaaggagttacagagacaaaatttggagctgtgacaaaa
ggatggactatctagtgattgccatatgcagggatccatcccataatcag
cttccaaatgctgacaccattgcatacactagcaagattttgctgaaagg
acccagatatagctctctcttgtgagactatgccggggcctagcaaacac
agaagtggatgatcacagtcagctattggatgggtcacacggcccccaat
ggaggagctagagaaattacccaaggagctaaaggaactgcaaccctata
ggtggacacatatgactaacagtacccgggagcttcttgtctttagctgc
atatgtatcaaagatgctagtcgcatcacttgcaagagaggcccatgact
tgccactttatattgctcagtacaggggacccatgtcaaatggggagtgg
tggct

gaattcctcactatgttggtaccaatttggtttagtcagggtttctattc
ctgcataaacatcatgaccaaggaacaagttggagaggaaagggtttatt
catcttactcttccacattgctgttcatcaccaaaggaaatcaggactgg
aactcaagcaggtcaggaagcaggagctgatgcagaggccatggaaggat
agtcttcactggcttgctttccctggcttgctcagcctggtctttattat
tattattattaattaattaatttatttattggtttttttgaaacagggtt
tctctgtgtagccctggctgtccttgaactcagaaatccgcctgcctctg
cctccctagtgctgggattaaaggcgtgcaccaccatgcccggcttcagc
ctgctctcttatagaatttaaaatctactttcaattttgttcagcccatt
ctcattcaccttccagatctccatgtggccatctagcttttgcagaatcc
ccccccccccctcaaaaaaaatcaggctagaaaattctcatagcactgtc
tataattcctaacagcttattatgctttcataaggacttatttactttat
ctctacattagacttaagtgcttgcaatttgggagtagcttctattcttc
tagtatttagctcatagttatgttgagcagtatagaaaaaaaatatcttg
tttgggatgtgagaatggactaggcttttgtaattagccacaggagtact
caaaatcacctgtgtctgacaagctacagaaaataccatgccagacactt
tgtagacatagggagaacacaccaaatttttaaaaaaaaaaaaagttaga
ttccctcctttatcccaggatgcttttaagtttccttggaggtagaaaaa
agctgccatggacttacaaatattaaattatctgacaatattatctttga
cactgtaagcctttaactacttgctcctttaaaacccaaacagcagctga
agcccattgttgtgttgttgcaagtcttctttaagtttcagtaccttggg
gagggtggcagcaggaagtaacaaggctagccttgtgctacaagaagacc
ttgtctcaaaccaaaaaacatcctacctgttctggtagacctaaagttgt
ctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40544404_40545530
seq2: B6Ng01-274M08.g_67_1219

seq1  GAATTCCTCACTATGTTGGTACCAATTTGGTTTAGTCAGGGTTTCTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTATGTTGGTACCAATTTGGTTTAGTCAGGGTTTCTATTC  50

seq1  CTGCATAAACATCATGACCAAGGAACAAGTTGGAGAGGAAAGGGTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAAACATCATGACCAAGGAACAAGTTGGAGAGGAAAGGGTTTATT  100

seq1  CATCTTACTCTTCCACATTGCTGTTCATCACCAAAGGAAATCAGGACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACTCTTCCACATTGCTGTTCATCACCAAAGGAAATCAGGACTGG  150

seq1  AACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAAGGAT  200

seq1  AGTCTTCACTGGCTTGCTTTCCCTGGCTTGCTCAGCCTGGTCTTTATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCACTGGCTTGCTTTCCCTGGCTTGCTCAGCCTGGTCTTTATTAT  250

seq1  TATTATTATTAATTAATTAATTTATTTATTGGTTTTTTTGAAACAGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTAATTAATTAATTTATTTATTGGTTTTTTTGAAACAGGGTT  300

seq1  TCTCTGTGTAGCCCTGGCTGTCCTTGAACTCAGAAATCCGCCTGCCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAGCCCTGGCTGTCCTTGAACTCAGAAATCCGCCTGCCTCTG  350

seq1  CCTCCCTAGTGCTGGGATTAAAGGCGTGCACCACCATGCCCGGCTTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTAGTGCTGGGATTAAAGGCGTGCACCACCATGCCCGGCTTCAGC  400

seq1  CTGCTCTCTTATAGAATTTAAAATCTACTTTCAATTTTGTTCAGCCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCTTATAGAATTTAAAATCTACTTTCAATTTTGTTCAGCCCATT  450

seq1  CTCATTCACCTTCCAGATCTCCATGTGGCCATCTAGCTTTTGCAGAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCACCTTCCAGATCTCCATGTGGCCATCTAGCTTTTGCAGAATCC  500

seq1  CCCCCCCCCCCTCAAAAAAAATCAGGCTAGAAAATTCTCATAGCACTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCTCAAAAAAAATCAGGCTAGAAAATTCTCATAGCACTGTC  550

seq1  TATAATTCCTAACAGCTTATTATGCTTTCATAAGGACTTATTTACTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCCTAACAGCTTATTATGCTTTCATAAGGACTTATTTACTTTAT  600

seq1  CTCTACATTAGACTTAAGTGCTTGCAATTTGGGAGTAGCTTCTATTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATTAGACTTAAGTGCTTGCAATTTGGGAGTAGCTTCTATTCTTC  650

seq1  TAGTATTTAGCTCATAGTTATGTTGAGCAGTATAGAAAAAAAATATCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTAGCTCATAGTTATGTTGAGCAGTATAGAAAAAAAATATCTTG  700

seq1  TTTGGGATGTGAGAATGGACTAGGCTTTTGTAATTAGCCACAGGAGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATGTGAGAATGGACTAGGCTTTTGTAATTAGCCACAGGAGTACT  750

seq1  CAAAATCACCTGTGTCTGACAAGCTACAGAAAATACCATGCCAGACACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCACCTGTGTCTGACAAGCTACAGAAAATACCATGCCAGACACTT  800

seq1  TGTAGACATAGGGAGAACACACCAAA-TTTTAAAAAAAAAAAAAGTTAGA  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTAGACATAGGGAGAACACACCAAATTTTTAAAAAAAAAAAAAGTTAGA  850

seq1  TTCCCTCCTTTATCCCAGGATGC-TTTAAGTTTCCTT-GAGGTAG-AAAA  896
      ||||||||||||||||||||||| ||||||||||||| ||||||| ||||
seq2  TTCCCTCCTTTATCCCAGGATGCTTTTAAGTTTCCTTGGAGGTAGAAAAA  900

seq1  AGCTGCCATGGACTTACAAATATTAAA-TATCTGAC-ATATTATCTTTGA  944
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  AGCTGCCATGGACTTACAAATATTAAATTATCTGACAATATTATCTTTGA  950

seq1  CACTGTAAGCC-TTAACTAC-TGCTCCTT--AAAACCAAACAGCAGCTGA  990
      ||||||||||| |||||||| ||||||||  ||| |||||||||||||||
seq2  CACTGTAAGCCTTTAACTACTTGCTCCTTTAAAACCCAAACAGCAGCTGA  1000

seq1  --GCCAT--GTGTGTTG-TGCAGGTCT--CTTAAGTTTCAGTA-CTTGGG  1032
         ||||   ||||||| |||| ||||   ||||||||||||| ||||||
seq2  AGCCCATTGTTGTGTTGTTGCAAGTCTTCTTTAAGTTTCAGTACCTTGGG  1050

seq1  --AGGTGGCAGCAGG-AGT-ACAAGGCTAGCC-TGTGCTACAAG-AGACC  1076
         |||||||||||| ||| |||||||||||| ||||||||||| |||||
seq2  GAGGGTGGCAGCAGGAAGTAACAAGGCTAGCCTTGTGCTACAAGAAGACC  1100

seq1  TTGTCTCAAAAC-AAAAACATCTACCCTGTTCT-GTAGAACCTAAGTTGT  1124
      |||||||||| | |||||||||   |||||||| ||||| |  |||||||
seq2  TTGTCTCAAACCAAAAAACATCCTACCTGTTCTGGTAGACCTAAAGTTGT  1150

seq1  CTG  1127
      |||
seq2  CTG  1153


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