BAC Information

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BAC

Clone NameB6Ng01-274O17
Chromosome11 (Build37)
Map Location 106,841,383 - 106,948,589
singlet/doubletdoublet
Overlap geneKpna2, 1810010H24Rik, Bptf
Upstream geneAce, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873
Downstream geneLOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274O17.bB6Ng01-274O17.g
ACCGA076094GA076095
length1,0261,094
definitionB6Ng01-274O17.b B6Ng01-274O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,841,383 - 106,842,418)(106,947,487 - 106,948,589)
sequence
gaattccaccatccaggggcagagatgggaggatctctgtgagttcaagg
ccagcttacaatctggagaaaggcaacttgggccccatgggaacagtgac
ttctgtgctctggaccaaattcctgagaaacctcccctcaaaagcctttg
gacatagacaccccccacacacacacacacacactgagatacctgcactg
cagtgaacttaatctaataggaatggatttgttgggggagctattcagca
tttacactgcaattccagtactttggaggtggaggcacaaaagtcaagaa
tccagtgttatcctcagctacggagtgaatccaaaaccaagttgtgtcct
gccctactcgcttttaatttttaaccctaaaactaatcgagagctggcat
cactcataatttcatttaggaagtcgatagcagtttcatctctaccttgg
ggagctgtgccgcacagagcagttaaacaacttgctgaaggccacacagc
ggtctggaggcgtccagcctggatggcaacgcaaatggaattcaagagca
aggttctaacgccctaaactctactgcctccctgtggttatctttctagt
tgcaaggagccttccaggcttttaaacctttccttaggctgagtatgcac
agccaacctggtttatcagaccctgcctcaaaatagataaaatgcataag
taaataaataaaccaatcccagggtgtttccctggtggctgattccagct
tagcctggggtacctggaagctgtctcctgaatctttttttttttttttt
tttgggtttttcagacagggtttctctgtgtagccctggctgtcctggca
cttcacttttgtagaccagactagccttcgaacttagaaatccacctgcc
tctgtctcccaagtgctgggataaaggcatgctgtctcctgaatctttag
ccagggttctcatccgcatgtgagacccacacctgtacccagcacttgga
ggctaagaggaagatactgtgatgtc
gaattctctccaaatctgtttctagcagagagatttgaacactttagaaa
tatgagaccataagctctgggtatttttctcaacaagtccacatcttcca
tagcggatgggctcactctgttgtgtgcagttgttgcgttggttgctttt
tcttcagctctagaatattgaaagattgtctgccttgtgctcgatgtaaa
taaagagcctgtgagttgatggaccgagagactaatggtgtatttcactc
tcccgccatggtcggctttactttctaacactgcatcaggatgaagtcct
acagccatgaaatgcttttctgacatttagatgttgatgtgattttcagt
gtaaaaatcaggtattttatttttctagaagactctaacaggacatgtga
cagcagtaacactagtgctaccactgcctccagccagcctaacctggaga
cctgcagcagcagcgagctcacttcttcccagagtgactctgctaaggca
gcggatgaccctgagattggagaaagagactcccatacacctgtctctgt
tcacgaagagataggtaagagcgctctcatccattcaaggagattttttt
tttcttttttcttcaaacattttcaattttttaaacaaattcagttcagt
aggttgactgttttgtttttgtttttgtttttttttaacatgcgctcact
gcttttgtttcgcataaatgaaatcctataagaggagagaaatagacccc
cttttactctcctgaagcatagccaccatcagtattttctatttctatta
cattcatatgtgtatgtttacagttttgtttcattttgtttttggctttt
ttgtttgtttgttttgaatatataactgggatcattctgcatgtgttgtt
ctccatcttgttttgtttttctgtttttccactttggtgacacacgtagg
gacgtttccggttagaagatacacatttttgtagctgctgcatagtattt
ggctgttacatcgtgttcttccacagcccaacacttgtgtttctgcagta
tctagcagtaagagccagcgactgaagacactggttccagtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106841383_106842418
seq2: B6Ng01-274O17.b_45_1070

seq1  GAATTCCACCATCCAGGGGCAGAGATGGGAGGATCTCTGTGAGTTCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCATCCAGGGGCAGAGATGGGAGGATCTCTGTGAGTTCAAGG  50

seq1  CCAGCTTACAATCTGGAGAAAGGCAACTTGGGCCCCATGGGAACAGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTACAATCTGGAGAAAGGCAACTTGGGCCCCATGGGAACAGTGAC  100

seq1  TTCTGTGCTCTGGACCAAATTCCTGAGAAACCTCCCCTCAAAAGCCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCTCTGGACCAAATTCCTGAGAAACCTCCCCTCAAAAGCCTTTG  150

seq1  GACATAGACACCCCCCACACACACACACACACACTGAGATACCTGCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGACACCCCCCACACACACACACACACACTGAGATACCTGCACTG  200

seq1  CAGTGAACTTAATCTAATAGGAATGGATTTGTTGGGGGAGCTATTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACTTAATCTAATAGGAATGGATTTGTTGGGGGAGCTATTCAGCA  250

seq1  TTTACACTGCAATTCCAGTACTTTGGAGGTGGAGGCACAAAAGTCAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTGCAATTCCAGTACTTTGGAGGTGGAGGCACAAAAGTCAAGAA  300

seq1  TCCAGTGTTATCCTCAGCTACGGAGTGAATCCAAAACCAAGTTGTGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTTATCCTCAGCTACGGAGTGAATCCAAAACCAAGTTGTGTCCT  350

seq1  GCCCTACTCGCTTTTAATTTTTAACCCTAAAACTAATCGAGAGCTGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACTCGCTTTTAATTTTTAACCCTAAAACTAATCGAGAGCTGGCAT  400

seq1  CACTCATAATTTCATTTAGGAAGTCGATAGCAGTTTCATCTCTACCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATAATTTCATTTAGGAAGTCGATAGCAGTTTCATCTCTACCTTGG  450

seq1  GGAGCTGTGCCGCACAGAGCAGTTAAACAACTTGCTGAAGGCCACACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTGCCGCACAGAGCAGTTAAACAACTTGCTGAAGGCCACACAGC  500

seq1  GGTCTGGAGGCGTCCAGCCTGGATGGCAACGCAAATGGAATTCAAGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGAGGCGTCCAGCCTGGATGGCAACGCAAATGGAATTCAAGAGCA  550

seq1  AGGTTCTAACGCCCTAAACTCTACTGCCTCCCTGTGGTTATCTTTCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTAACGCCCTAAACTCTACTGCCTCCCTGTGGTTATCTTTCTAGT  600

seq1  TGCAAGGAGCCTTCCAGGCTTTTAAACCTTTCCTTAGGCTGAGTATGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGAGCCTTCCAGGCTTTTAAACCTTTCCTTAGGCTGAGTATGCAC  650

seq1  AGCCAACCTGGTTTATCAGACCCTGCCTCAAAATAGATAAAATGCATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCTGGTTTATCAGACCCTGCCTCAAAATAGATAAAATGCATAAG  700

seq1  TAAATAAATAAACCAATCCCAGGGTGTTTCCCTGGTGGCTGATTCCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAACCAATCCCAGGGTGTTTCCCTGGTGGCTGATTCCAGCT  750

seq1  TAGCCTGGGGTACCTGGAAGCTGTCTCCTGAATCTTTTTTTTTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  TAGCCTGGGGTACCTGGAAGCTGTCTCCTGAATC---TTTTTTTTTTTTT  797

seq1  TTTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  850
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGGTTTTTC-AGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  846

seq1  GGCAC-TCACTTTTGTAGACCAGACTAGCC-TCGAACTTAGAAATCCACC  898
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  GGCACTTCACTTTTGTAGACCAGACTAGCCTTCGAACTTAGAAATCCACC  896

seq1  TGCCTCTGTCTCCCAAGTGCTGGGATAAAAGGCATGCTGTCTCCTGAATC  948
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCCTCTGTCTCCCAAGTGCTGGGAT-AAAGGCATGCTGTCTCCTGAATC  945

seq1  TTTAAGCCAGGG-TCTCATCCGCATGTGAGGACCCACACCTGTAACCCCA  997
      ||| |||||||| |||||||||||||||| ||||||||||||||  ||||
seq2  TTT-AGCCAGGGTTCTCATCCGCATGTGA-GACCCACACCTGTA--CCCA  991

seq1  GCACTTGGGAAGCTAAGGAGGGAGGATTACTGTGATGTC  1036
      |||||| ||| ||||| |||| ||   ||||||||||||
seq2  GCACTT-GGAGGCTAA-GAGGAAG--ATACTGTGATGTC  1026

seq1: chr11_106947487_106948589
seq2: B6Ng01-274O17.g_66_1159 (reverse)

seq1  ACCACTGGACCAGGTGGTCCCTTCAGTCGCTGGCTCCTACCCTGCTAGAA  50
      ||||||||| |  |||    |||||||||||||||| ||  ||||||| |
seq2  ACCACTGGAACCAGTG---TCTTCAGTCGCTGGCTCTTA--CTGCTAG-A  44

seq1  TACTTGCAG-AACACAAGGTGTGGGGCTGGTGGGAAGAACCACGATGGTA  99
      ||| ||||| ||||||| |||| ||||||   ||||||| |||||| |||
seq2  TAC-TGCAGAAACACAA-GTGTTGGGCTG--TGGAAGAA-CACGAT-GTA  88

seq1  ACAGCCAAATACTATGCAGCAGCTACAAAAATGTGTATC-TCTAACCGGA  148
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAGCCAAATACTATGCAGCAGCTACAAAAATGTGTATCTTCTAACCGGA  138

seq1  AACGTCCCTACGTGTGTCACC-AAGTGGAAAAACAGAAAAACAAAACAAG  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACGTCCCTACGTGTGTCACCAAAGTGGAAAAACAGAAAAACAAAACAAG  188

seq1  ATGGAGAACAACACATGCAGAATGATCCCAGTTATATATTCAAAACAAAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAACAACACATGCAGAATGATCCCAGTTATATATTCAAAACAAAC  238

seq1  AAACAAAAAAGCCAAAAACAAAATGAAACAAAACTGTAAACATACACATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAGCCAAAAACAAAATGAAACAAAACTGTAAACATACACATA  288

seq1  TGAATGTAATAGAAATAGAAAATACTGATGGTGGCTATGCTTCAGGAGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAATAGAAATAGAAAATACTGATGGTGGCTATGCTTCAGGAGAG  338

seq1  TAAAAGGGGGTCTATTTCTCTCCTCTTATAGGATTTCATTTATGCGAAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGGGTCTATTTCTCTCCTCTTATAGGATTTCATTTATGCGAAAC  388

seq1  AAAAGCAGTGAGCGCATGTTAAAAAAAAACAAAAACAAAAACAAAACAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTGAGCGCATGTTAAAAAAAAACAAAAACAAAAACAAAACAGT  438

seq1  CAACCTACTGAACTGAATTTGTTTAAAAAATTGAAAATGTTTGAAGAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTACTGAACTGAATTTGTTTAAAAAATTGAAAATGTTTGAAGAAAA  488

seq1  AAGAAAAAAAAAATCTCCTTGAATGGATGAGAGCGCTCTTACCTATCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAAAATCTCCTTGAATGGATGAGAGCGCTCTTACCTATCTCT  538

seq1  TCGTGAACAGAGACAGGTGTATGGGAGTCTCTTTCTCCAATCTCAGGGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAACAGAGACAGGTGTATGGGAGTCTCTTTCTCCAATCTCAGGGTC  588

seq1  ATCCGCTGCCTTAGCAGAGTCACTCTGGGAAGAAGTGAGCTCGCTGCTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCTGCCTTAGCAGAGTCACTCTGGGAAGAAGTGAGCTCGCTGCTGC  638

seq1  TGCAGGTCTCCAGGTTAGGCTGGCTGGAGGCAGTGGTAGCACTAGTGTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTCTCCAGGTTAGGCTGGCTGGAGGCAGTGGTAGCACTAGTGTTA  688

seq1  CTGCTGTCACATGTCCTGTTAGAGTCTTCTAGAAAAATAAAATACCTGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCACATGTCCTGTTAGAGTCTTCTAGAAAAATAAAATACCTGAT  738

seq1  TTTTACACTGAAAATCACATCAACATCTAAATGTCAGAAAAGCATTTCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACTGAAAATCACATCAACATCTAAATGTCAGAAAAGCATTTCAT  788

seq1  GGCTGTAGGACTTCATCCTGATGCAGTGTTAGAAAGTAAAGCCGACCATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGGACTTCATCCTGATGCAGTGTTAGAAAGTAAAGCCGACCATG  838

seq1  GCGGGAGAGTGAAATACACCATTAGTCTCTCGGTCCATCAACTCACAGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGAGTGAAATACACCATTAGTCTCTCGGTCCATCAACTCACAGGC  888

seq1  TCTTTATTTACATCGAGCACAAGGCAGACAATCTTTCAATATTCTAGAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTACATCGAGCACAAGGCAGACAATCTTTCAATATTCTAGAGC  938

seq1  TGAAGAAAAAGCAACCAACGCAACAACTGCACACAACAGAGTGAGCCCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAAGCAACCAACGCAACAACTGCACACAACAGAGTGAGCCCAT  988

seq1  CCGCTATGGAAGATGTGGACTTGTTGAGAAAAATACCCAGAGCTTATGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTATGGAAGATGTGGACTTGTTGAGAAAAATACCCAGAGCTTATGGT  1038

seq1  CTCATATTTCTAAAGTGTTCAAATCTCTCTGCTAGAAACAGATTTGGAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTTCTAAAGTGTTCAAATCTCTCTGCTAGAAACAGATTTGGAGA  1088

seq1  GAATTC  1103
      ||||||
seq2  GAATTC  1094