BAC Information

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BAC

Clone NameB6Ng01-275C03
Chromosome11 (Build37)
Map Location 48,593,780 - 48,594,730
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554
Downstream geneGnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275C03.bB6Ng01-275C03.g
ACCGA076252GA076253
length393966
definitionB6Ng01-275C03.b B6Ng01-275C03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatccagaacctactaaaacaacacaagagtagtagtagattgg
aaaatgggggggggggggattggtccccacctataacacctgcctggaat
ccgccaataactcaggctccttgagatctgatactgacatctgagcttgg
ggaaagtgtattcttgcgatatctcactcgcgcatactcatatgcacact
cgaccatggtcttttgttcaccatctgctaatgttttaactgatcttttt
gatcttcttttctgaaaaggtcaatcctttgcttcttagttgacaactgc
agagaggcgatgatcatgaatatattatcctacgacattacatagaaatc
catctttgtttgcttgctaaggctgcaacttattcttggagga
gaattcagttcccagcatccagatcaggtgtctcacaactacgtgtacct
ccaactccagggcatccaacccccttctctggccctcgagggcacctgca
ctctcatgtacgggtacacagacacaagtacaactttaaaatgaattttt
tgtatatccttttttttttttttttttttttgagacagggtttctctgtg
tagtcctggctgtcctggaactcatcttgtagaacaggctggccttaaaa
atctgcctgcctctgcctcctgagtgctgggattaaaggcgtgcgcaacc
acgctgggctgtaaatcctttttttaagttaattatttgggtagtgagat
ggtgcaacaggtaaaggtgcttactaccaaacctgaggacctgaagttag
tctctggaaggcacagggtagaaggaaagacccaaacccaagtcctctaa
cttccacatgcatccctttgcgtgcgtgtgcccaaacaaatgtgcacgca
cacacaataaatattttctcaatatttttaaataaaatagggcaactgtt
atcataaatatcaaacagtagattctttactcttttaaatatagagctac
aggaggaaggcatgatcaaacatccatggaagctgtggtgtgtcccgcag
tatgcccctctacccaaacagctttccttgcaaatgttcattgcagtgcg
tcaatggcatgttttgaggcctctggcttctgctactctaccaatactgg
attctcactggggactcctcttggatagccttgttgttgcccctgtgtca
tggagatcttaacccccttcacacactccaagcagtttcgtatatagaat
aaatgttggggatgggcccaacctcaaagtccctggattctgggcctggg
gtagaaacagatgttggtcaccccaagagctctcctggctcccctgcccg
caccaccctgcaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_48593780_48594730
seq2: B6Ng01-275C03.g_66_1031

seq1  GAATTCAGTTCCCAGCATCCAGATCAGGTGTCTCACAACTACGTGTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCAGCATCCAGATCAGGTGTCTCACAACTACGTGTACCT  50

seq1  CCAACTCCAGGGCATCCAACCCCCTTCTCTGGCCCTCGAGGGCACCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCAGGGCATCCAACCCCCTTCTCTGGCCCTCGAGGGCACCTGCA  100

seq1  CTCTCATGTACGGGTACACAGACACAAGTACAACTTTAAAATGAATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATGTACGGGTACACAGACACAAGTACAACTTTAAAATGAATTTTT  150

seq1  TGTATATCCTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCCTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTG  200

seq1  TAGTCCTGGCTGTCCTGGAACTCATCTTGTAGAACAGGCTGGCCTTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGTCCTGGCTGTCCTGGAACTCATCTTGTAGAACAGGCTGGCCTTAAAA  250

seq1  ATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCAACC  300

seq1  ACGCTGGGCTGTAAATCCTTTTTTTAAGTTAATTATTTGGGTAGTGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGGCTGTAAATCCTTTTTTTAAGTTAATTATTTGGGTAGTGAGAT  350

seq1  GGTGCAACAGGTAAAGGTGCTTACTACCAAACCTGAGGACCTGAAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAACAGGTAAAGGTGCTTACTACCAAACCTGAGGACCTGAAGTTAG  400

seq1  TCTCTGGAAGGCACAGGGTAGAAGGAAAGACCCAAACCCAAGTCCTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAAGGCACAGGGTAGAAGGAAAGACCCAAACCCAAGTCCTCTAA  450

seq1  CTTCCACATGCATCCCTTTGCGTGCGTGTGCCCAAACAAATGTGCACGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACATGCATCCCTTTGCGTGCGTGTGCCCAAACAAATGTGCACGCA  500

seq1  CACACAATAAATATTTTCTCAATATTTTTAAATAAAATAGGGCAACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATAAATATTTTCTCAATATTTTTAAATAAAATAGGGCAACTGTT  550

seq1  ATCATAAATATCAAACAGTAGATTCTTTACTCTTTTAAATATAGAGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAATATCAAACAGTAGATTCTTTACTCTTTTAAATATAGAGCTAC  600

seq1  AGGAGGAAGGCATGATCAAACATCCATGGAAGCTGTGGTGTGTCCCGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGGCATGATCAAACATCCATGGAAGCTGTGGTGTGTCCCGCAG  650

seq1  TATGCCCCTCTACCCAAACAGCTTTCCTTGCAAATGTTCATTGCAGTGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCCTCTACCCAAACAGCTTTCCTTGCAAATGTTCATTGCAGTGCG  700

seq1  TCAATGGCATGTTTTGAGGCCTCTGGCTTCTGCTACTCTACCAATACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGCATGTTTTGAGGCCTCTGGCTTCTGCTACTCTACCAATACTGG  750

seq1  ATTCTCACT-GGGACTCCTCTTGGATAGCC-TGTTGTTG-CCCTGTGTCA  797
      ||||||||| |||||||||||||||||||| |||||||| ||||||||||
seq2  ATTCTCACTGGGGACTCCTCTTGGATAGCCTTGTTGTTGCCCCTGTGTCA  800

seq1  TGGAGATCTTAA-CCCCTTCACACACTCC-AGCAG-TTCGTAGATAG-AT  843
      |||||||||||| |||||||||||||||| ||||| |||||| |||| ||
seq2  TGGAGATCTTAACCCCCTTCACACACTCCAAGCAGTTTCGTATATAGAAT  850

seq1  AGATGTTGGGG-TGGGCC--AACTCAAAGT-CCTGGA-TCTGGGCCT-GG  887
      | ||||||||| ||||||  | |||||||| |||||| ||||||||| ||
seq2  AAATGTTGGGGATGGGCCCAACCTCAAAGTCCCTGGATTCTGGGCCTGGG  900

seq1  GTAGAAGCAGA-GTTGGTCAGCCCAAGAGCTCTCCT-GCTCCCCTGCCTG  935
      |||||| |||| |||||||| ||||||||||||||| ||||||||||| |
seq2  GTAGAAACAGATGTTGGTCACCCCAAGAGCTCTCCTGGCTCCCCTGCCCG  950

seq1  CAGCAACCTGCAAAAA  951
      || || ||||||||||
seq2  CACCACCCTGCAAAAA  966