BAC Information

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BAC

Clone NameB6Ng01-275I24
Chromosome11 (Build37)
Map Location 39,098,238 - 39,099,430
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275I24.bB6Ng01-275I24.g
ACCGA076569GA076570
length1,1971,148
definitionB6Ng01-275I24.b B6Ng01-275I24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaagagaggaatcacgattcctccgactgaaaagcacttaagg
gaatgttcaaagtccttagtcaagtgagaaatacaaaggaaaacaactct
gtggttccacattacacccatcagaatggctacattcaaaaattcaagag
aaagcacatgctggtgactatatggagcatggggaacacttcatcattgc
tggtgggagtgcaaacttgtatagccactttggaaatcaatttggtggtt
tctcagaaaaattggaataattctacctcaatatccatcattcttgaaaa
ccttgacattcagcctgcaaatttatttggggttggatgggtgaactcaa
cttgtgtaaatagaaataccacttgacattactgaatgtctagttgtgag
ttaaaattctctacaaaacaagagaatatgaattagaaaagtttggtttt
atgtacttttcctaattctgctattgctgttccttgaatgaaatcatgtt
tctactaagtctttttcaaatcaatactatacaaccatattatagtgaaa
actttcatatgtaagcaaaactattgatttggactttttatgagagaagt
caataaaagaaaagactatcagtacatctcctcaattacttaattttttt
ttcactttcttctgttttgttgagatatttgatccatatctatcattctc
atcctttgttatttcataatttgccacaaacatttactgttttgtatggc
tcaatttaactaaaacagacccttgatgatataagtccattcatattttg
tccggttgtccagttctctattatttatgaaagtgtacagacacccttac
ttaggtaactcatttttgtctgcctctgtctattcaaagacctcaatatt
tagttgaattgtcatgagcattttatgtgtaaagtgagtttgtcattaat
catggtggttcaattgagtttctaatatagcttagatatacgtcttcaac
agttttaatgaatatatatacattctacctgtccatgtcattcattttta
tgggatgaccagttagcattttcttcttaaacagacttactatgatttta
ataaggaacacacattttttattcctgcctccctttattgtgggagaatt
aggttcaaataccttcaatcacaatttatttttccataggcttgggg
gaattcctgtcctgacttccattgctgacgaactagcatgtagaagctta
agctgaacaaaccctttccttccaaagttactttggagatggtgttttgc
tgcagcaatagaaacccaaattaacagtcagaatggctaagataaaaaat
tcaggtgacagcagatgctggcgaggatgtggagaaagtggaacactcct
ctattgctggtggaattgcaagcttgtacaaccactctggagatcagtct
ggcagttcctcagaaaattggacacagtgctacctgaagatccagaaata
cctctcctgggcatagacccagaagatgttccaactggtaataaggacac
atgctccactatgttcatagcagccccagatgtccctcaacatagaaatg
gatacagaaaatgtgaatggtacatttacacaatggagtactactcaact
attaaaaacaatgaatttataaaatgcttggggaaatggatggatctgga
ggatatcatcctgagtgaggtaacccaatcacataagtagtcacttgata
tacactcactgataagtggatattatcccagaaacttagaatacccaaga
tacaatttgcaaaacacaagaaaatcaagaaggagaaccaacctgtggat
acctcattccttcttagaatatggaagaaaatacccatggaaggagttac
agagagaatttttggagctaagacgaaaggatggaatccatcccataatc
agccaccaaacccagacactgttgcatatgccagcatgattttgcctaaa
ggaccctgttgtagctgtctcgtgtgaggctatgcaatgcttggcaaata
cagaagtggttgttcacagtcatctgttggatagaacacagagtccccaa
tcaaggagctaaagaaaataccctaggagctgacgagtctgcacccttac
aggtagacacatataaactaatcagtactccagagctcatgtctctagct
gcatatgagcagagatagctagtgttgatcatgggaagagagccccttgt
ctaccaacttatattgctcagtacagaaatgcaagctagaacctggtatg
ctgtacggtactgatcgaaattgtatgacgtaccattcgtatgctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39098238_39099430
seq2: B6Ng01-275I24.b_46_1242 (reverse)

seq1  CCCCAAGCCTATTG-AAAATATA-TGTGATTGAA-GTATTTGTGACACTA  47
      |||||||||||| | |||||| | |||||||||| |||||  |||  |||
seq2  CCCCAAGCCTATGGAAAAATAAATTGTGATTGAAGGTATT--TGAACCTA  48

seq1  AATCT-CCACAATAAAGGGAAGCAGAAATAAAAA---TGTGTCCTTTATT  93
      | ||| |||||||||||||| |||| ||||||||   ||||| | |||||
seq2  ATTCTCCCACAATAAAGGGAGGCAGGAATAAAAAATGTGTGTTCCTTATT  98

seq1  AAAAATCATAGT-AGTCTGTTTAAGAAGGAAAATGCTAACTGGTCATCCA  142
       ||||||||||| |||||||||||||| ||||||||||||||||||||| 
seq2  -AAAATCATAGTAAGTCTGTTTAAGAA-GAAAATGCTAACTGGTCATCCC  146

seq1  AT-AAAATGAATGACATGGACAGGTAGAATGTATATATATTCATTAAAAC  191
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGAATGACATGGACAGGTAGAATGTATATATATTCATTAAAAC  196

seq1  TGTTGAAGACCTTATATCTAAGCTATATTAGAAACTCAATTGAACCACCA  241
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGA-CGTATATCTAAGCTATATTAGAAACTCAATTGAACCACCA  245

seq1  TGATTAATGACAAACTCACTTTACACATAAAATGCTCATGACAATTCAAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATGACAAACTCACTTTACACATAAAATGCTCATGACAATTCAAC  295

seq1  TAAATATTGAGGTCTTTGAATAGACAGAGGCAGACAAAAATGAGTTACCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTGAGGTCTTTGAATAGACAGAGGCAGACAAAAATGAGTTACCT  345

seq1  AAGTAAGGGTGTCTGTACACTTTCATAAATAATAGAGAACTGGACAACCG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGGTGTCTGTACACTTTCATAAATAATAGAGAACTGGACAACCG  395

seq1  GACAAAATATGAATGGACTTATATCATCAAGGGTCTGTTTTAGTTAAATT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATATGAATGGACTTATATCATCAAGGGTCTGTTTTAGTTAAATT  445

seq1  GAGCCATACAAAACAGTAAATGTTTGTGGCAAATTATGAAATAACAAAGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATACAAAACAGTAAATGTTTGTGGCAAATTATGAAATAACAAAGG  495

seq1  ATGAGAATGATAGATATGGATCAAATATCTCAACAAAACAGAAGAAAGTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATGATAGATATGGATCAAATATCTCAACAAAACAGAAGAAAGTG  545

seq1  AAAAAAAAATTAAGTAATTGAGGAGATGTACTGATAGTCTTTTCTTTTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTAAGTAATTGAGGAGATGTACTGATAGTCTTTTCTTTTAT  595

seq1  TGACTTCTCTCATAAAAAGTCCAAATCAATAGTTTTGCTTACATATGAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTCTCATAAAAAGTCCAAATCAATAGTTTTGCTTACATATGAAA  645

seq1  GTTTTCACTATAATATGGTTGTATAGTATTGATTTGAAAAAGACTTAGTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACTATAATATGGTTGTATAGTATTGATTTGAAAAAGACTTAGTA  695

seq1  GAAACATGATTTCATTCAAGGAACAGCAATAGCAGAATTAGGAAAAGTAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGATTTCATTCAAGGAACAGCAATAGCAGAATTAGGAAAAGTAC  745

seq1  ATAAAACCAAACTTTTCTAATTCATATTCTCTTGTTTTGTAGAGAATTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCAAACTTTTCTAATTCATATTCTCTTGTTTTGTAGAGAATTTT  795

seq1  AACTCACAACTAGACATTCAGTAATGTCAAGTGGTATTTCTATTTACACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAACTAGACATTCAGTAATGTCAAGTGGTATTTCTATTTACACA  845

seq1  AGTTGAGTTCACCCATCCAACCCCAAATAAATTTGCAGGCTGAATGTCAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTTCACCCATCCAACCCCAAATAAATTTGCAGGCTGAATGTCAA  895

seq1  GGTTTTCAAGAATGATGGATATTGAGGTAGAATTATTCCAATTTTTCTGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAAGAATGATGGATATTGAGGTAGAATTATTCCAATTTTTCTGA  945

seq1  GAAACCACCAAATTGATTTCCAAAGTGGCTATACAAGTTTGCACTCCCAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCACCAAATTGATTTCCAAAGTGGCTATACAAGTTTGCACTCCCAC  995

seq1  CAGCAATGATGAAGTGTTCCCCATGCTCCATATAGTCACCAGCATGTGCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGATGAAGTGTTCCCCATGCTCCATATAGTCACCAGCATGTGCT  1045

seq1  TTCTCTTGAATTTTTGAATGTAGCCATTCTGATGGGTGTAATGTGGAACC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGAATTTTTGAATGTAGCCATTCTGATGGGTGTAATGTGGAACC  1095

seq1  ACAGAGTTGTTTTCCTTTGTATTTCTCACTTGACTAAGGACTTTGAACAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTGTTTTCCTTTGTATTTCTCACTTGACTAAGGACTTTGAACAT  1145

seq1  TCCCTTAAGTGCTTTTCAGTCGGAGGAATCGTGATTCCTCTCTTGAGAAT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAGTGCTTTTCAGTCGGAGGAATCGTGATTCCTCTCTTGAGAAT  1195

seq1  TC  1193
      ||
seq2  TC  1197