BAC Information

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BAC

Clone NameB6Ng01-276B22
Chromosome11 (Build37)
Map Location 96,485,711 - 96,620,278
singlet/doubletdoublet
Overlap geneSkap1
Upstream genePhb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775
Downstream geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276B22.bB6Ng01-276B22.g
ACCGA076978GA076979
length9491,059
definitionB6Ng01-276B22.b B6Ng01-276B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,619,671 - 96,620,278)(96,485,711 - 96,486,762)
sequence
gaattcagccccaccatacaaggcaaggaaacatatccagactttatttc
tgctttgcaagccacaacccatcagtaacctcttcctcccatgatttcct
tcgttgctgtcttctttgtagcaggcttgtaggaaaggcttatggatgtg
gggacacagagagggcaggaagctagaagctggctgcttgagaaacaggt
ctgatgaactgtcttcttcctactcatcttatcagtggcttaaagtcaca
ggaagcagcagagtcttggctccattcagggaagagaaggatccatggcc
agagtaggggacgggagtttctgatggtctgagaatatgttccctgaggg
atgaaaaaacgtaaattgtctttttatgactcagaacataagagcgtggg
tagggagcagctcagttgctaaagtgcttgcctggtacatgggaagctca
ggattcagcccccagcatggcaccgactgggtaaggtggtgcacatcttt
ttttttgtttgtttgttttgtttatgtttttttgtttgtttttttcgaga
cagggtttctctgtgtagcctggctgtcctggaactcactctgtagacca
ggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgctgg
gattaaaggtgtgtgccaccacgcccagctttttttttttttaagattta
tttattttatgtatatgagtacaccattgctgtcttcagacacaccagag
gaaggcatcagatcccgttgccgatggttgtgagccaccatgtggttgct
gggaattgaactcaggacctctggaagagcagtcagtgctcttaaccgct
gagccatctctccggccctcttgttctgctgcatatacatctgcatgtta
gaagaaggacatctgattcccccttatccatggttgtgagccaccatgt
gaattcattaagagattggtgggtttgagtccctaaagacaaatatttta
gtagttcttaatggtgatccgctatggaaggttacatttccaagacatta
tttattttagtatgcatgtaacttgtttttaaggaggcctttctccccca
acccccttcctttcacattttccaactgagaaaaatcatccagaaatatc
tccactgccacctacttgcagtttggaaatttacacgtacctgactttgc
aaataaacccgattttcccccctgccttgcaaagcaagaggactgtggag
aatactgcaggtggcattgtggattcttttcttgtttatgaagacatggg
ttttgtgaaattattaggaaaacacccatcttatcagatgtttttacgga
cactggtggaaacagctttttctgtaaatgtggtatgtcttcctctatga
taatcgtgttgctacaaattatgcagagaacagtctaagtgagtgtccca
ttcctaaatgccttgctcatatttatattaggactatggtgctatagtca
taacccttaataacttcttatgaagcacgctatataatgcgctcgtgatt
acgccgtggaaagctgttacccagcaccttgtaaaaggcagacattttaa
aaaacaatgtatgttcctatttaatacagggagatgagttatcagacact
gtgtgtacttgtaatttcataaataataataaggtgtgtggaaatggctc
tttaatgcccaatgttattatgtagaaaacgtgaagtgttctaatacaat
aacagatatgaggatttggaattattttttttcttctcgtcatcacagtg
accactctttgcctaattggtttcattttattacaatcctctggctggaa
gcttagaggtttgacactgttatgtgcttttttaatataggttattctcc
atttttattcaacatactaaaagtatatgccccgtcttctcgtatttaac
tggaaatcctggcttgattcatttgtgtagcttcacctctgttaagaagt
cctcccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96619671_96620278
seq2: B6Ng01-276B22.b_47_654 (reverse)

seq1  GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGCTACACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGCTACACAGAG  50

seq1  AAACCCTGTCTCGAAAAAAACAAACAAAAAAACATAAACAAAACAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCGAAAAAAACAAACAAAAAAACATAAACAAAACAAACAA  100

seq1  ACAAAAAAAAAGATGTGCACCACCTTACCCAGTCGGTGCCATGCTGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAAGATGTGCACCACCTTACCCAGTCGGTGCCATGCTGGGGG  150

seq1  CTGAATCCTGAGCTTCCCATGTACCAGGCAAGCACTTTAGCAACTGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCTGAGCTTCCCATGTACCAGGCAAGCACTTTAGCAACTGAGCT  200

seq1  GCTCCCTACCCACGCTCTTATGTTCTGAGTCATAAAAAGACAATTTACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTACCCACGCTCTTATGTTCTGAGTCATAAAAAGACAATTTACGT  250

seq1  TTTTTCATCCCTCAGGGAACATATTCTCAGACCATCAGAAACTCCCGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATCCCTCAGGGAACATATTCTCAGACCATCAGAAACTCCCGTCC  300

seq1  CCTACTCTGGCCATGGATCCTTCTCTTCCCTGAATGGAGCCAAGACTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCTGGCCATGGATCCTTCTCTTCCCTGAATGGAGCCAAGACTCTG  350

seq1  CTGCTTCCTGTGACTTTAAGCCACTGATAAGATGAGTAGGAAGAAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTGTGACTTTAAGCCACTGATAAGATGAGTAGGAAGAAGACAG  400

seq1  TTCATCAGACCTGTTTCTCAAGCAGCCAGCTTCTAGCTTCCTGCCCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGACCTGTTTCTCAAGCAGCCAGCTTCTAGCTTCCTGCCCTCTC  450

seq1  TGTGTCCCCACATCCATAAGCCTTTCCTACAAGCCTGCTACAAAGAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCCACATCCATAAGCCTTTCCTACAAGCCTGCTACAAAGAAGAC  500

seq1  AGCAACGAAGGAAATCATGGGAGGAAGAGGTTACTGATGGGTTGTGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACGAAGGAAATCATGGGAGGAAGAGGTTACTGATGGGTTGTGGCTT  550

seq1  GCAAAGCAGAAATAAAGTCTGGATATGTTTCCTTGCCTTGTATGGTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCAGAAATAAAGTCTGGATATGTTTCCTTGCCTTGTATGGTGGGG  600

seq1  CTGAATTC  608
      ||||||||
seq2  CTGAATTC  608

seq1: chr11_96485711_96486762
seq2: B6Ng01-276B22.g_67_1125

seq1  GAATTCATTAAGAGATTGGTGGGTTTGAGTCCCTAAAGACAAATATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGAGATTGGTGGGTTTGAGTCCCTAAAGACAAATATTTTA  50

seq1  GTAGTTCTTAATGGTGATCCGCTATGGAAGGTTACATTTCCAAGACATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCTTAATGGTGATCCGCTATGGAAGGTTACATTTCCAAGACATTA  100

seq1  TTTATTTTAGTATGCATGTAACTTGTTTTTAAGGAGGCCTTTCTCCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAGTATGCATGTAACTTGTTTTTAAGGAGGCCTTTCTCCCCCA  150

seq1  ACCCCCTTCCTTTCACATTTTCCAACTGAGAAAAATCATCCAGAAATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTTCCTTTCACATTTTCCAACTGAGAAAAATCATCCAGAAATATC  200

seq1  TCCACTGCCACCTACTTGCAGTTTGGAAATTTACACGTACCTGACTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGCCACCTACTTGCAGTTTGGAAATTTACACGTACCTGACTTTGC  250

seq1  AAATAAACCCGATTTTCCCCCCTGCCTTGCAAAGCAAGAGGACTGTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACCCGATTTTCCCCCCTGCCTTGCAAAGCAAGAGGACTGTGGAG  300

seq1  AATACTGCAGGTGGCATTGTGGATTCTTTTCTTGTTTATGAAGACATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGCAGGTGGCATTGTGGATTCTTTTCTTGTTTATGAAGACATGGG  350

seq1  TTTTGTGAAATTATTAGGAAAACACCCATCTTATCAGATGTTTTTACGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGAAATTATTAGGAAAACACCCATCTTATCAGATGTTTTTACGGA  400

seq1  CACTGGTGGAAACAGCTTTTTCTGTAAATGTGGTATGTCTTCCTCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGGAAACAGCTTTTTCTGTAAATGTGGTATGTCTTCCTCTATGA  450

seq1  TAATCGTGTTGCTACAAATTATGCAGAGAACAGTCTAAGTGAGTGTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGTGTTGCTACAAATTATGCAGAGAACAGTCTAAGTGAGTGTCCCA  500

seq1  TTCCTAAATGCCTTGCTCATATTTATATTAGGACTATGGTGCTATAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAATGCCTTGCTCATATTTATATTAGGACTATGGTGCTATAGTCA  550

seq1  TAACCCTTAATAACTTCTTATGAAGCACGCTATATAATGCGCTCGTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTAATAACTTCTTATGAAGCACGCTATATAATGCGCTCGTGATT  600

seq1  ACGCCGTGGAAAGCTGTTACCCAGCACCTTGTAAAAGGCAGACATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCGTGGAAAGCTGTTACCCAGCACCTTGTAAAAGGCAGACATTTTAA  650

seq1  AAAACAATGTATGTTCCTATTTAATACAGGGAGATGAGTTATCAGACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATGTATGTTCCTATTTAATACAGGGAGATGAGTTATCAGACACT  700

seq1  GTGTGTACTTGTAATTTCATAAATAATAATAAGGTGTGTGGAAATGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACTTGTAATTTCATAAATAATAATAAGGTGTGTGGAAATGGCTC  750

seq1  TTTAATGCCCAATGTTATTATGTAGAAAACGTGAAGTGTTCTAATACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCCCAATGTTATTATGTAGAAAACGTGAAGTGTTCTAATACAAT  800

seq1  AACAGATATGAGGATTTGGAATTATTTTTTTTCTTCTCGTCATCACAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATATGAGGATTTGGAATTATTTTTTTTCTTCTCGTCATCACAGTG  850

seq1  ACCACTCTTTGCCTAA-TGGTTTCATTTTATTACAAATCCTCTGGCTGGA  899
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  ACCACTCTTTGCCTAATTGGTTTCATTTTATTAC-AATCCTCTGGCTGGA  899

seq1  AGCTTAGAGGTTTGACACTGTTATGTGC-TTTTTAATATAGGTTATTCTC  948
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCTTAGAGGTTTGACACTGTTATGTGCTTTTTTAATATAGGTTATTCTC  949

seq1  CA-TTTTATTCAACATACTAAAAGTATATTGCCCCGTCTTCTCGTATTTA  997
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATTTTTATTCAACATACTAAAAGTATA-TGCCCCGTCTTCTCGTATTTA  998

seq1  ACTGGAAATCCTGGCTTGATTCATTTGTGTAGC-TCA-CTCTGT--AG-A  1042
      ||||||||||||||||||||||||||||||||| ||| ||||||  || |
seq2  ACTGGAAATCCTGGCTTGATTCATTTGTGTAGCTTCACCTCTGTTAAGAA  1048

seq1  GT-CTCCCATT  1052
      || ||||||||
seq2  GTCCTCCCATT  1059