BAC Information

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BAC

Clone NameB6Ng01-276N07
Chromosome11 (Build37)
Map Location 11,775,234 - 11,886,091
singlet/doubletdoublet
Overlap geneDdc, Grb10
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1
Downstream geneCobl, LOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276N07.bB6Ng01-276N07.g
ACCGA077511GA077512
length1,148499
definitionB6Ng01-276N07.b B6Ng01-276N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,884,945 - 11,886,091)(11,775,234 - 11,775,738)
sequence
gaattctcaagaacttatctcttttcctttgtctttacattctactctca
actactcatagacagtctgtagagttggcttcctgtgagttcattttgct
tctcttatgaggtatgtagcatccagtggaagctagaatgttgatgtgtc
acagaaccagaaataagacttaaagggaaaaggatcgtgttttcatatga
aatgcctattcagagttttaacctttaagcacacctgtgacattggcttc
ccttggtcctcctcttcatatagcatgtaaagccagagagccaaagaaag
gcctggtagtgtagccacagaaccaacaagaacaaatagagattagtcca
aagtaatgaagccaaagaaggtctaaagggaagaaatagatgtcctctaa
cacaccatgagactgatgataacctacttgggcataacacaacagatgtc
aaataatctgacttactttcaaagcactgagggaaaggtaactatctaga
attttataccaatgtatcctttctagtaggacacaatgaaactttttcaa
gcaattcttcagaaaacaagttactggcaagctttgttgaaagaaggatt
cagggctgggcaaacataaatgagtagtagagctcttgcttatcaggcat
atgcccagggttttatttctcatattgaaaaaggctgtcaaaaatgttac
ttcaggaaaggggaataggagcattcagggaaacatggcaagcaggaaac
agtgtagtggagagaaactagtgtgatattgttagtgcagtaccatgcaa
atagttgaaacagggacaaagtgaataccatgtacacagattttggaagt
cttcacggagtatgagtcaaacctaaagagaatcttgttaagaaaagtaa
aatgtcgaacaatttgtgaaaaggtaaatttgattatgcatttgaaaata
ttaaatgcagctaaaagttgactatacttactaaaagaacatatatatat
atatatatatatatatatatatatagtactgagcagaaaaaaaattgaga
atatttttttctttaaaaaaatcaataattgcattataggaaaaattaga
aaaaatagacaggaagaaaaaatgaagtcctatcgaacctttacaaga

ttcatggagtgagcaggctcagaacctgagagccaatgacatctgcttca
aatcttgcctgaagcacacagctgggacacagagctcagggagacctagg
ccagatgccttcagtagggaactttctaagtctttactccatgtagaaga
ggacctcacacagggaggggtgagtagcctgtaggcaggcatgggcctat
ttttagcacttttgctctgcctccttgcccatcagataggctggacagta
ggctggtgggaggccgatgaatgagtcaagggtaggaaccgtctccaaag
tcagagtgcatagcaatcttctggtcttgggggaatggaagcttcacaac
cttgaactgggattttgattcaaatcaagtggttattaaaaacaacaaca
acaaaaaaaaaaaaacaaaaccaaacaaatagaaaccaaaaaacagtact
atgctgaatcctcttctcttctcttctcttctcttctcttatcttatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_11884945_11886091
seq2: B6Ng01-276N07.b_46_1193 (reverse)

seq1  TCTTGT--ATGTTCTATAGGACTTCATTTTTTTCTTTCCTGTCTTATTTT  48
      ||||||  | |||| |||||||||||||||||   |||||||||   |||
seq2  TCTTGTAAAGGTTCGATAGGACTTCATTTTTT--CTTCCTGTCT--ATTT  46

seq1  TTTCTTATTTTT-CTAT-ATGGCATTATTTGATTTTTTAAAG-AAAAAAT  95
      ||||| |||||| |||| |||  ||||||   |||||||||| |||||||
seq2  TTTCTAATTTTTCCTATAATGCAATTATTGATTTTTTTAAAGAAAAAAAT  96

seq1  ATTCTCAA-TTTTTTTCTGCTCAGTAACTATATATATATATATATATATA  144
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  ATTCTCAATTTTTTTTCTGCTCAGT-ACTATATATATATATATATATATA  145

seq1  TATATATATATATGTTCTTTTAGTAAGTATAGTCAACTTTTAGCTGCATT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATGTTCTTTTAGTAAGTATAGTCAACTTTTAGCTGCATT  195

seq1  TAATATTTTCAAATGCATAATCAAATTTACCTTTTCACAAATTGTTCGAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTCAAATGCATAATCAAATTTACCTTTTCACAAATTGTTCGAC  245

seq1  ATTTTACTTTTCTTAACAAGATTCTCTTTAGGTTTGACTCATACTCCCTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTTTACTTTTCTTAACAAGATTCTCTTTAGGTTTGACTCATACTCCGTG  295

seq1  AAGACTTCCAAAATCTGTGTACATGGTATTCACTTTGTCCCTGTTTCAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCCAAAATCTGTGTACATGGTATTCACTTTGTCCCTGTTTCAAC  345

seq1  TATTTGCATGGTACTGCACTAACAATATCACACTAGTTTCTCTCCACTAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCATGGTACTGCACTAACAATATCACACTAGTTTCTCTCCACTAC  395

seq1  ACTGTTTCCTGCTTGCCATGTTTCCCTGAATGCTCCTATTCCCCTTTCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCCTGCTTGCCATGTTTCCCTGAATGCTCCTATTCCCCTTTCCT  445

seq1  GAAGTAACATTTTTGACAGCCTTTTTCAATATGAGAAATAAAACCCTGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAACATTTTTGACAGCCTTTTTCAATATGAGAAATAAAACCCTGGG  495

seq1  CATATGCCTGATAAGCAAGAGCTCTACTACTCATTTATGTTTGCCCAGCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCTGATAAGCAAGAGCTCTACTACTCATTTATGTTTGCCCAGCC  545

seq1  CTGAATCCTTCTTTCAACAAAGCTTGCCAGTAACTTGTTTTCTGAAGAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCTTCTTTCAACAAAGCTTGCCAGTAACTTGTTTTCTGAAGAAT  595

seq1  TGCTTGAAAAAGTTTCATTGTGTCCTACTAGAAAGGATACATTGGTATAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAAAAAGTTTCATTGTGTCCTACTAGAAAGGATACATTGGTATAA  645

seq1  AATTCTAGATAGTTACCTTTCCCTCAGTGCTTTGAAAGTAAGTCAGATTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGATAGTTACCTTTCCCTCAGTGCTTTGAAAGTAAGTCAGATTA  695

seq1  TTTGACATCTGTTGTGTTATGCCCAAGTAGGTTATCATCAGTCTCATGGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATCTGTTGTGTTATGCCCAAGTAGGTTATCATCAGTCTCATGGT  745

seq1  GTGTTAGAGGACATCTATTTCTTCCCTTTAGACCTTCTTTGGCTTCATTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAGGACATCTATTTCTTCCCTTTAGACCTTCTTTGGCTTCATTA  795

seq1  CTTTGGACTAATCTCTATTTGTTCTTGTTGGTTCTGTGGCTACACTACCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGACTAATCTCTATTTGTTCTTGTTGGTTCTGTGGCTACACTACCA  845

seq1  GGCCTTTCTTTGGCTCTCTGGCTTTACATGCTATATGAAGAGGAGGACCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCTTTGGCTCTCTGGCTTTACATGCTATATGAAGAGGAGGACCA  895

seq1  AGGGAAGCCAATGTCACAGGTGTGCTTAAAGGTTAAAACTCTGAATAGGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCCAATGTCACAGGTGTGCTTAAAGGTTAAAACTCTGAATAGGC  945

seq1  ATTTCATATGAAAACACGATCCTTTTCCCTTTAAGTCTTATTTCTGGTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATATGAAAACACGATCCTTTTCCCTTTAAGTCTTATTTCTGGTTC  995

seq1  TGTGACACATCAACATTCTAGCTTCCACTGGATGCTACATACCTCATAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACATCAACATTCTAGCTTCCACTGGATGCTACATACCTCATAAG  1045

seq1  AGAAGCAAAATGAACTCACAGGAAGCCAACTCTACAGACTGTCTATGAGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAAATGAACTCACAGGAAGCCAACTCTACAGACTGTCTATGAGT  1095

seq1  AGTTGAGAGTAGAATGTAAAGACAAAGGAAAAGAGATAAGTTCTTGAGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGAGTAGAATGTAAAGACAAAGGAAAAGAGATAAGTTCTTGAGAA  1145

seq1  TTC  1147
      |||
seq2  TTC  1148


seq1: chr11_11775234_11775738
seq2: B6Ng01-276N07.g_68_572

seq1  GAATTCTTCATGGAGTGAGCAGGCTCAGAACCTGAGAGCCAATGACATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGGAGTGAGCAGGCTCAGAACCTGAGAGCCAATGACATCT  50

seq1  GCTTCAAATCTTGCCTGAAGCACACAGCTGGGACACAGAGCTCAGGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAATCTTGCCTGAAGCACACAGCTGGGACACAGAGCTCAGGGAGA  100

seq1  CCTAGGCCAGATGCCTTCAGTAGGGAACTTTCTAAGTCTTTACTCCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCCAGATGCCTTCAGTAGGGAACTTTCTAAGTCTTTACTCCATGT  150

seq1  AGAAGAGGACCTCACACAGGGAGGGGTGAGTAGCCTGTAGGCAGGCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGACCTCACACAGGGAGGGGTGAGTAGCCTGTAGGCAGGCATGG  200

seq1  GCCTATTTTTAGCACTTTTGCTCTGCCTCCTTGCCCATCAGATAGGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTTTTAGCACTTTTGCTCTGCCTCCTTGCCCATCAGATAGGCTGG  250

seq1  ACAGTAGGCTGGTGGGAGGCCGATGAATGAGTCAAGGGTAGGAACCGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGCTGGTGGGAGGCCGATGAATGAGTCAAGGGTAGGAACCGTCT  300

seq1  CCAAAGTCAGAGTGCATAGCAATCTTCTGGTCTTGGGGGAATGGAAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCAGAGTGCATAGCAATCTTCTGGTCTTGGGGGAATGGAAGCTT  350

seq1  CACAACCTTGAACTGGGATTTTGATTCAAATCAAGTGGTTATTAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCTTGAACTGGGATTTTGATTCAAATCAAGTGGTTATTAAAAACA  400

seq1  ACAACAACAAAAAAAAAAAAACAAAACCAAACAAATAGAAACCAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAAAAAAAAAAAAACAAAACCAAACAAATAGAAACCAAAAAAC  450

seq1  AGTACTATGCTGAATCCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT  500
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTACTATGCTGAATCCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTATCT  500

seq1  TCTCT  505
      | |||
seq2  TATCT  505


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