BAC Information

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BAC

Clone NameB6Ng01-277E02
Chromosome11 (Build37)
Map Location 88,220,512 - 88,373,574
singlet/doubletdoublet
Overlap geneMsi2
Upstream geneTex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277E02.bB6Ng01-277E02.g
ACCGA077822GA077823
length969440
definitionB6Ng01-277E02.b B6Ng01-277E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,372,971 - 88,373,574)(88,220,512 - 88,220,957)
sequence
gaattcactccccgaggttgtcctctgacccctgtgtgagccatggcaca
gccatagtaaatactgacagttgttattacattcttacctgattgtatgt
gcattgtgtgtactgtggaatgatccacagtggtttatgtgcccatcacc
tctaatgctttcatagtgagtgactttacaatgccctctgtaggcagttg
tgatatgcgtgacgtgatgtgctctggttaactgtagctgctaccatgct
agctgaggaatcgctgccgagtcttcctgactgtggctgaaacttgatgc
cctttgactgacttctttcccttcctggacatcccacccccacccctgac
agctgctgtttgcctagcttctttttctgtcccaacttctttcaattcca
cgtgcgggtgtgaccatgttggatttgacttattggagctgacttagttc
actgaacataagagtcgtcctgtagggttgggttcacccatctgtcacaa
atgacagcagttcccttttttagaatggatgactaactactgcccccacg
tgtgtgtgtgtgcacatgtgcaaacatatgtacacatacactctcttcat
ctgcttttccattgatgagtacttctcttgactgtcataaataggggtgc
agtggcgtgctccccacagctttttattaggcatctatagtctaccttct
acactgcgtcagcacagaggtatttaacagtcactactttagcttccgtg
gatcatacgtgttagtggaaggttaaagggaaggcatgcagggagcagca
ggtaataagaacctcaggccatgtgtttggccatgaagaaaacagaaatg
gcccacgtaagagatggtgtttggggtttctggtaattggtgctgagtga
gtggacaggaaaggctcccttagagctttgtgaagttctgggggtacagt
cattctcagcagaggggca
ctgccagcctttacaaatgtgaccacagagtaggtaatgcctctgggacc
aggaagagaaccagggagggcttcctctgagctgcagagggatgaagcag
gtacaggtagatggcggaggatcacacaatgtccagtagtgagtctgggc
ttctgtctctgattccaaagctctcagtgtctctaaatgacccagcaggt
cctcatatggtgacagaaggagctaaccctttcctctcatcggtatgcct
catagtaaggtcatagcagaaaggcatgcttctgcagagagggttcctgg
gagttttcagggctaactgacctttttggcctactgacctttttctgccg
agaaagagactggcaggtgatgctgaggggactagcctgatgtgcgtgtg
tgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88372971_88373574
seq2: B6Ng01-277E02.b_48_651 (reverse)

seq1  GCAGATGAAGAGAGTGTATGTGTACATATGTTTGCACATGTGCACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGAAGAGAGTGTATGTGTACATATGTTTGCACATGTGCACACACA  50

seq1  CACACGTGGGGGCAGTAGTTAGTCATCCATTCTAAAAAAGGGAACTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTGGGGGCAGTAGTTAGTCATCCATTCTAAAAAAGGGAACTGCTG  100

seq1  TCATTTGTGACAGATGGGTGAACCCAACCCTACAGGACGACTCTTATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTGACAGATGGGTGAACCCAACCCTACAGGACGACTCTTATGTT  150

seq1  CAGTGAACTAAGTCAGCTCCAATAAGTCAAATCCAACATGGTCACACCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACTAAGTCAGCTCCAATAAGTCAAATCCAACATGGTCACACCCG  200

seq1  CACGTGGAATTGAAAGAAGTTGGGACAGAAAAAGAAGCTAGGCAAACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGAATTGAAAGAAGTTGGGACAGAAAAAGAAGCTAGGCAAACAGC  250

seq1  AGCTGTCAGGGGTGGGGGTGGGATGTCCAGGAAGGGAAAGAAGTCAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAGGGGTGGGGGTGGGATGTCCAGGAAGGGAAAGAAGTCAGTCA  300

seq1  AAGGGCATCAAGTTTCAGCCACAGTCAGGAAGACTCGGCAGCGATTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCATCAAGTTTCAGCCACAGTCAGGAAGACTCGGCAGCGATTCCTC  350

seq1  AGCTAGCATGGTAGCAGCTACAGTTAACCAGAGCACATCACGTCACGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCATGGTAGCAGCTACAGTTAACCAGAGCACATCACGTCACGCAT  400

seq1  ATCACAACTGCCTACAGAGGGCATTGTAAAGTCACTCACTATGAAAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACTGCCTACAGAGGGCATTGTAAAGTCACTCACTATGAAAGCAT  450

seq1  TAGAGGTGATGGGCACATAAACCACTGTGGATCATTCCACAGTACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTGATGGGCACATAAACCACTGTGGATCATTCCACAGTACACACA  500

seq1  ATGCACATACAATCAGGTAAGAATGTAATAACAACTGTCAGTATTTACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATACAATCAGGTAAGAATGTAATAACAACTGTCAGTATTTACTA  550

seq1  TGGCTGTGCCATGGCTCACACAGGGGTCAGAGGACAACCTCGGGGAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGCCATGGCTCACACAGGGGTCAGAGGACAACCTCGGGGAGTGA  600

seq1  ATTC  604
      ||||
seq2  ATTC  604

seq1: chr11_88220512_88220957
seq2: B6Ng01-277E02.g_63_508

seq1  GAATTCCTGCCAGCCTTTACAAATGTGACCACAGAGTAGGTAATGCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCAGCCTTTACAAATGTGACCACAGAGTAGGTAATGCCTCT  50

seq1  GGGACCAGGAAGAGAACCAGGGAGGGCTTCCTCTGAGCTGCAGAGGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAGGAAGAGAACCAGGGAGGGCTTCCTCTGAGCTGCAGAGGGATG  100

seq1  AAGCAGGTACAGGTAGATGGCGGAGGATCACACAATGTCCAGTAGTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTACAGGTAGATGGCGGAGGATCACACAATGTCCAGTAGTGAGT  150

seq1  CTGGGCTTCTGTCTCTGATTCCAAAGCTCTCAGTGTCTCTAAATGACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTCTGTCTCTGATTCCAAAGCTCTCAGTGTCTCTAAATGACCCA  200

seq1  GCAGGTCCTCATATGGTGACAGAAGGAGCTAACCCTTTCCTCTCATCGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCCTCATATGGTGACAGAAGGAGCTAACCCTTTCCTCTCATCGGT  250

seq1  ATGCCTCATAGTAAGGTCATAGCAGAAAGGCATGCTTCTGCAGAGAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCATAGTAAGGTCATAGCAGAAAGGCATGCTTCTGCAGAGAGGGT  300

seq1  TCCTGGGAGTTTTCAGGGCTAACTGACCTTTTTGGCCTACTGACCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAGTTTTCAGGGCTAACTGACCTTTTTGGCCTACTGACCTTTTT  350

seq1  CTGCCGAGAAAGAGACTGGCAGGTGATGCTGAGGGGACTAGCCTGATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGAGAAAGAGACTGGCAGGTGATGCTGAGGGGACTAGCCTGATGTG  400

seq1  CGTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  446