BAC Information

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BAC

Clone NameB6Ng01-277G19
Chromosome11 (Build37)
Map Location 104,045,771 - 104,225,174
singlet/doubletdoublet
Overlap gene4933407P14Rik, Mapt, 1700081L11Rik
Upstream geneFmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277G19.bB6Ng01-277G19.g
ACCGA077950GA077951
length7491,150
definitionB6Ng01-277G19.b B6Ng01-277G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,224,435 - 104,225,174)(104,045,771 - 104,046,905)
sequence
gaattccaagcaatcctcccccccttaactttccagatgctaagattcta
aacatacttctcaggacactggttcttagatccttccttgtccctgcccc
ccatataccctataaaacttatacttaataggatttttcttcaagacctt
ttgtcacatttctttggattagctaagagggcaaattattaattccagtg
cctgccttttctatcactatgttaaatattttgtgccttatactggattc
tttcaataaaagaaaatagccaggtggtgctggcatatgccttgaatccc
agcactcgggaggcagaggcaggccagtttctgagttcaaggccagccag
ggctatacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaa
aacctaattctcacaaggccatcctttatggccctgcttagacagatgag
gattatgagtgcatttttgtctgccaccttaactttcctatgcttttctc
tgtgagctataaatcctgaactttggaggcagaggcaggcggatttctga
gttcaaggacaaccctgatctacagagtgagttccttggacagccagggc
tacacagagaaaaccttgtctcccaaaacaaacaaacaaacaaaagagtt
tcatctgaatatttaaataaaaaaaacgaaacctctcagaagcttcagct
ataatgcatactctctgggaaattaaagtcctgtatatatggctctttc
gaattcacttcaaaaggtttataagacatcaaagcccaatggtttaacta
tgtgagaactttttctacttggactgctttgagcctattctactcctaat
ataagtcactgttacaaagacgcccatgacaagcagaaggcttattgtgg
aaggtcacatatctctctagtcacagtgagcacccccagacaactgctcc
atgcagttgcccagggactgccccccttcactttgtcccccatcccttca
ggcattgtccccattacaggtcctgtccatgtcctatgttgtaaggaagg
gacagcttgagtaagaagctccaaggtgagctctggatagcgggactgat
ttccaaggacggtgtgcagcctccagctaggtgggccttgtagcgatgca
gtaagtccagatagacacactggcccttagcatgcattcttcatcaggct
tagcactcaggagcctagaggtgtgatgtcctcattactctgcagctaat
gatgcagggccagggcctggagcgagaatgcagtgtctgaaagtgcttgc
tgggaaaccttaaggacctaaggataggttcccagcacccagatctttaa
aaatggggtgtggccacacacacgtgtcatctcagccctgtgggagggaa
agacaggatcactggggcttgctagctgccagcctagctccaagcccctg
cctcaagagaatgagccagagggagatagaatgatgaggaagatgtaccc
agggccctcctctggtctcctctgaacatgcacaggcattcgctcctaca
cacatctgtacacatatgcgatacactgtcctggtttgatatctgttcct
atgataaaacaccatgagtgaaaacaactttaggaaggaaggacttacag
gtttacaggtccaccatcaggtaaacccaaagcagaaaactcagcccatg
gggctgaagaggaggccatggaggggtgctgttaactggccttgctccct
attaggcgtgctcagcctgccttttatagaacccatgacttaaccctcct
agaagtagcactaccccacacttcaggaagccagagccagccaggaatcc
ttctgaaagttccaggctagcttgttctacagagtgagcctccaggacag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104224435_104225174
seq2: B6Ng01-277G19.b_44_792 (reverse)

seq1  GAAAGAGCCAAATATTCA-GAC-TTAATTACCCAGAGAGTATGCATTATC  48
      |||||||||| |||| || ||| |||||| ||||||||||||||||||| 
seq2  GAAAGAGCCATATATACAGGACTTTAATTTCCCAGAGAGTATGCATTATA  50

seq1  GCTGAAGCTTCTGAGAGGTTTC--TTTTTTTATTTAAATATTCAGATG-A  95
      ||||||||||||||||||||||  |||||||||||||||||||||||| |
seq2  GCTGAAGCTTCTGAGAGGTTTCGTTTTTTTTATTTAAATATTCAGATGAA  100

seq1  ACTCTTTTGTTTGTTTGTTTGTTTT-GGAGAC-AGGGTTTCTCTGTGTAG  143
      ||||||||||||||||||||||||| |||||| ||| |||||||||||||
seq2  ACTCTTTTGTTTGTTTGTTTGTTTTGGGAGACAAGGTTTTCTCTGTGTAG  150

seq1  CCCTGGCTGTCC-AGGAACTCACTCTGTAGATCA-GGTTGTCCTTGAACT  191
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  CCCTGGCTGTCCAAGGAACTCACTCTGTAGATCAGGGTTGTCCTTGAACT  200

seq1  CAGAAATCCGCCTGCCTCTGCCTCCAAAGTTCAGGATTTATAGCTCACAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCGCCTGCCTCTGCCTCCAAAGTTCAGGATTTATAGCTCACAG  250

seq1  AGAAAAGCATAGGAAAGTTAAGGTGGCAGACAAAAATGCACTCATAATCC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCATAGGAAAGTTAAGGTGGCAGACAAAAATGCACTCATAATCC  300

seq1  TCATCTGTCTAAGCAGGGCCATAAAGGATGGCCTTGTGAGAATTAGGTTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTCTAAGCAGGGCCATAAAGGATGGCCTTGTGAGAATTAGGTTT  350

seq1  TTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCC  400

seq1  TGGCTGGCCTTGAACTCAGAAACTGGCCTGCCTCTGCCTCCCGAGTGCTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCTTGAACTCAGAAACTGGCCTGCCTCTGCCTCCCGAGTGCTG  450

seq1  GGATTCAAGGCATATGCCAGCACCACCTGGCTATTTTCTTTTATTGAAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAAGGCATATGCCAGCACCACCTGGCTATTTTCTTTTATTGAAAG  500

seq1  AATCCAGTATAAGGCACAAAATATTTAACATAGTGATAGAAAAGGCAGGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGTATAAGGCACAAAATATTTAACATAGTGATAGAAAAGGCAGGC  550

seq1  ACTGGAATTAATAATTTGCCCTCTTAGCTAATCCAAAGAAATGTGACAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAATTAATAATTTGCCCTCTTAGCTAATCCAAAGAAATGTGACAAA  600

seq1  AGGTCTTGAAGAAAAATCCTATTAAGTATAAGTTTTATAGGGTATATGGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTGAAGAAAAATCCTATTAAGTATAAGTTTTATAGGGTATATGGG  650

seq1  GGGCAGGGACAAGGAAGGATCTAAGAACCAGTGTCCTGAGAAGTATGTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGACAAGGAAGGATCTAAGAACCAGTGTCCTGAGAAGTATGTTT  700

seq1  AGAATCTTAGCATCTGGAAAGTTAAGGGGGGGAGGATTGCTTGGAATTC  740
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTAGCATCTGGAAAGTTAAGGGGGGGAGGATTGCTTGGAATTC  749

seq1: chr11_104045771_104046905
seq2: B6Ng01-277G19.g_64_1213

seq1  GAATTCACTTCAAAAGGTTTATAAGACATCAAAGCCCAATGGTTTAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCAAAAGGTTTATAAGACATCAAAGCCCAATGGTTTAACTA  50

seq1  TGTGAGAACTTTTTCTACTTGGACTGCTTTGAGCCTATTCTACTCCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAACTTTTTCTACTTGGACTGCTTTGAGCCTATTCTACTCCTAAT  100

seq1  ATAAGTCACTGTTACAAAGACGCCCATGACAAGCAGAAGGCTTATTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCACTGTTACAAAGACGCCCATGACAAGCAGAAGGCTTATTGTGG  150

seq1  AAGGTCACATATCTCTCTAGTCACAGTGAGCACCCCCAGACAACTGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCACATATCTCTCTAGTCACAGTGAGCACCCCCAGACAACTGCTCC  200

seq1  ATGCAGTTGCCCAGGGACTGCCCCCCTTCACTTTGTCCCCCATCCCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTGCCCAGGGACTGCCCCCCTTCACTTTGTCCCCCATCCCTTCA  250

seq1  GGCATTGTCCCCATTACAGGTCCTGTCCATGTCCTATGTTGTAAGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGTCCCCATTACAGGTCCTGTCCATGTCCTATGTTGTAAGGAAGG  300

seq1  GACAGCTTGAGTAAGAAGCTCCAAGGTGAGCTCTGGATAGCGGGACTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTGAGTAAGAAGCTCCAAGGTGAGCTCTGGATAGCGGGACTGAT  350

seq1  TTCCAAGGACGGTGTGCAGCCTCCAGCTAGGTGGGCCTTGTAGCGATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGACGGTGTGCAGCCTCCAGCTAGGTGGGCCTTGTAGCGATGCA  400

seq1  GTAAGTCCAGATAGACACACTGGCCCTTAGCATGCATTCTTCATCAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCCAGATAGACACACTGGCCCTTAGCATGCATTCTTCATCAGGCT  450

seq1  TAGCACTCAGGAGCCTAGAGGTGTGATGTCCTCATTACTCTGCAGCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTCAGGAGCCTAGAGGTGTGATGTCCTCATTACTCTGCAGCTAAT  500

seq1  GATGCAGGGCCAGGGCCTGGAGCGAGAATGCAGTGTCTGAAAGTGCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGGCCAGGGCCTGGAGCGAGAATGCAGTGTCTGAAAGTGCTTGC  550

seq1  TGGGAAACCTTAAGGACCTAAGGATAGGTTCCCAGCACCCAGATCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACCTTAAGGACCTAAGGATAGGTTCCCAGCACCCAGATCTTTAA  600

seq1  AAATGGGGTGTGGCCACACACACGTGTCATCTCAGCCCTGTGGGAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGTGTGGCCACACACACGTGTCATCTCAGCCCTGTGGGAGGGAA  650

seq1  AGACAGGATCACTGGGGCTTGCTAGCTGCCAGCCTAGCTCCAAGCCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATCACTGGGGCTTGCTAGCTGCCAGCCTAGCTCCAAGCCCCTG  700

seq1  CCTCAAGAGAATGAGCCAGAGGGAGATAGAATGATGAGGAAGATGTACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGAGAATGAGCCAGAGGGAGATAGAATGATGAGGAAGATGTACCC  750

seq1  AGGGCCCTCCTCTGGTCTCCTCTGAACATGCACAGGCATTCGCTCCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCTCCTCTGGTCTCCTCTGAACATGCACAGGCATTCGCTCCTACA  800

seq1  CACATCTGTACACATATGCGATACACTGTCCTGGTTTGATATCTGTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTACACATATGCGATACACTGTCCTGGTTTGATATCTGTTCCT  850

seq1  ATGATAAAACACCATGAGTGAAAACAAC-TTAGGAAGGAAGGACTTACAG  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGATAAAACACCATGAGTGAAAACAACTTTAGGAAGGAAGGACTTACAG  900

seq1  G-TTACAGGTCCACCATCAGGGTAAACCAAAGCAG-AAACTCAG-CCATG  946
      | |||||||||||||||||||  || ||||||||| |||||||| |||||
seq2  GTTTACAGGTCCACCATCAGGTAAACCCAAAGCAGAAAACTCAGCCCATG  950

seq1  GGGCTGAAGAGGAGGCCATGGAGGGGTGCTGTTTACTGG-CTTGCTCCCT  995
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  GGGCTGAAGAGGAGGCCATGGAGGGGTGCTGTTAACTGGCCTTGCTCCCT  1000

seq1  AT--AGCGTGCTCAGCCTGCCTTTTTATAGAACCCATGACT--ACCCTCC  1041
      ||   |||||||||||||||| |||||||||||||||||||  |||||||
seq2  ATTAGGCGTGCTCAGCCTGCC-TTTTATAGAACCCATGACTTAACCCTCC  1049

seq1  TAGAAGTAGCACCA-CCCACAC-TCAAGAAG-CAGAGGCAGGCAG--ATC  1086
      |||||||||||| | ||||||| ||| |||| ||||| ||| |||  |||
seq2  TAGAAGTAGCACTACCCCACACTTCAGGAAGCCAGAGCCAGCCAGGAATC  1099

seq1  C-TCTGAGAGTCCAAGGCTAGCCTGGTCTACAGAGTGAG-CTCCAGGACA  1134
      | ||||| ||| | |||||||| || ||||||||||||| ||||||||||
seq2  CTTCTGAAAGTTCCAGGCTAGCTTGTTCTACAGAGTGAGCCTCCAGGACA  1149

seq1  G  1135
      |
seq2  G  1150