BAC Information

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BAC

Clone NameB6Ng01-278B09
Chromosome11 (Build37)
Map Location 99,964,330 - 100,096,108
singlet/doubletdoublet
Overlap geneKrt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p
Upstream geneCcr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35
Downstream geneLOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278B09.bB6Ng01-278B09.g
ACCGA078423GA078424
length1,0621,144
definitionB6Ng01-278B09.b B6Ng01-278B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,095,040 - 100,096,108)(99,964,330 - 99,965,465)
sequence
gaattcttcttttctagtaggtctggagacgactgctgggaccaagacca
gaggagactatagaccactgcagagtattttaacctctagctgagtggac
aacaaacaggtcagaataatatgaggtagcaagacgcaaactttcctacc
ccagaataactcaggcaaaactctttggggctcctgtaaagtcaagagag
gaacgacaggacaatgacagagtcaagtgccctgggtgttgccccatggt
atccaagagactgtttttcggcccaactccatccttcctctcaggccaaa
tctatgcccattgttgtagcatgaattattaaaaacgcaatccatgctac
tctggcagtgcacaggtgggcaggagggtcggttctcacctctgcagact
ctttggcctgaagctctgaaatctgtcctcctggctccctaagttcccat
ggcaggttgctgccatgccagccccatgcttccaaattcccatggctctt
tgggctgcatttcttacaaacccacactttgcctccgtacctttgtttct
gtaggccagttgattcgccttgtgaaccaagaacaccacacaaacttagt
ttagaatcaacaggtaacacacagaattagcatccaaatacaaacagcac
caggattttccacaacacattgtggtcagagctcctaccaagcactatgg
gcaggtaggtgagaacggacttattgggctcctgcctgcaaggcaccatg
ggagtctggagacttctggcttagcgtagcggcactggttgactcccacc
acactcttgtttttccttgtttttccttagttccgagggaaacccaggag
agctcaagaattgcagagtcctctgcaattttgcataaagagtcctttat
tacgagtctccacccggcggatctcaaactttcccacagggtaggtcaag
agtgcgaccacgagtttggatgtcttgcacttatatacagcatagttaga
aattctttgatgctaggtgagggaaggatgcgataaaatagtcataaatc
agaacacgatac
gaattcctctaaaatggggaagaaaagctattgaggggaaggaatcccac
cctaaataccctggcatccgcacacagttgtggtttggccctgtgataac
aaatggccagcacactggtaagtcggagagcctttaatgggcagagacca
cccaccatgctctgttgagcctgcagctcgatctccagggagttgactgt
gcgtctcagctcaatgatctctgtctggcaacactgcagctgctctgagc
tggataccacctgctggttcagctcctcggtctacagagaaggagagaat
gaagaacagggacagacctagggctcctcatttatcccacccacagcctg
tagtcctggatcgccagcctcacctgagtgttgaaccaagcctccacatc
tctacggttattctccaccagcgtctcatactggcatcgcatgtcatcca
gtatcttgttgagatccactgggggagcagcatccacctccacattcagt
cggtccccaagctgggaacggagggcattgacttcctgcagtggccaagt
aagatagcatgaggctgtggaaaggttcctgtggcttggtaggttcaatg
acctggattctaaactctcatccctctcttgggtaccatgagataaaaga
gctgacctctttgaacatgcccccccacacacacgcacacacactccatt
ggactgtctatgctaacccctactgaggatttgggggatgacacagcacc
aagcaaatagaattattatcagacaccataatccaaattcagttgcacca
tcctgggtgagggtggactctctgtgtgactgcaggcaaatgacttcaca
tctttatgactaacttcccagctgtaaaatggagcttacggtggggagct
aactcttagaatcatggtgaacggtgagacagatgtaaagtgtttcacat
cctgccatacaattaagcccaaggccagcagggattcctcagtgggatgg
gaacccgggggatccacgtggcagcaacctcacctcttcatggttcttct
tgagacacagcagctcctcttcaggactcaacctggtgcctcaggtcagc
tttaacacaaggttcaggcttcatccaagagatccgggcgtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100095040_100096108
seq2: B6Ng01-278B09.b_49_1110 (reverse)

seq1  GTATCGTG-TCTGATTTATGACTTATTTTATCCGCCATCCCTTCCCTTCA  49
      |||||||| ||||||||||||| |||||||||   ||| ||||||| |||
seq2  GTATCGTGTTCTGATTTATGAC-TATTTTATC--GCAT-CCTTCCC-TCA  45

seq1  CCCTAAGCATTCAAAGAATTTCTAACTATGCTGTATATAAGTGCCAAGAC  99
      ||   |||| ||||||||||||||||||||||||||||||||| ||||||
seq2  CC--TAGCA-TCAAAGAATTTCTAACTATGCTGTATATAAGTG-CAAGAC  91

seq1  ATCCAAACTCGTGGTCGCACTCTTGACCTACCCTGTGGGAAAGTTTGAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACTCGTGGTCGCACTCTTGACCTACCCTGTGGGAAAGTTTGAGA  141

seq1  TCCGCCGGGTGGAGACTCGTAATAAAGGACTC-TTATGCAAAATTGCAGA  198
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCGCCGGGTGGAGACTCGTAATAAAGGACTCTTTATGCAAAATTGCAGA  191

seq1  GGACTCTGCAATTCTTGAGCTCTCCTGGGTTTCCCTCGGAACTAAGGAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGCAATTCTTGAGCTCTCCTGGGTTTCCCTCGGAACTAAGGAAA  241

seq1  AACAAGGAAAAACAAGAGTGTGGTGGGAGTCAACCAGTGCCGCTACGCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAAAAACAAGAGTGTGGTGGGAGTCAACCAGTGCCGCTACGCTA  291

seq1  AGCCAGAAGTCTCCAGACTCCCATGGTGCCTTGCAGGCAGGAGCCCAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGTCTCCAGACTCCCATGGTGCCTTGCAGGCAGGAGCCCAATA  341

seq1  AGTCCGTTCTCACCTACCTGCCCATAGTGCTTGGTAGGAGCTCTGACCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGTTCTCACCTACCTGCCCATAGTGCTTGGTAGGAGCTCTGACCAC  391

seq1  AATGTGTTGTGGAAAATCCTGGTGCTGTTTGTATTTGGATGCTAATTCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTGTGGAAAATCCTGGTGCTGTTTGTATTTGGATGCTAATTCTG  441

seq1  TGTGTTACCTGTTGATTCTAAACTAAGTTTGTGTGGTGTTCTTGGTTCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTACCTGTTGATTCTAAACTAAGTTTGTGTGGTGTTCTTGGTTCAC  491

seq1  AAGGCGAATCAACTGGCCTACAGAAACAAAGGTACGGAGGCAAAGTGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGAATCAACTGGCCTACAGAAACAAAGGTACGGAGGCAAAGTGTGG  541

seq1  GTTTGTAAGAAATGCAGCCCAAAGAGCCATGGGAATTTGGAAGCATGGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAAGAAATGCAGCCCAAAGAGCCATGGGAATTTGGAAGCATGGGG  591

seq1  CTGGCATGGCAGCAACCTGCCATGGGAACTTAGGGAGCCAGGAGGACAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATGGCAGCAACCTGCCATGGGAACTTAGGGAGCCAGGAGGACAGA  641

seq1  TTTCAGAGCTTCAGGCCAAAGAGTCTGCAGAGGTGAGAACCGACCCTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGCTTCAGGCCAAAGAGTCTGCAGAGGTGAGAACCGACCCTCCT  691

seq1  GCCCACCTGTGCACTGCCAGAGTAGCATGGATTGCGTTTTTAATAATTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCTGTGCACTGCCAGAGTAGCATGGATTGCGTTTTTAATAATTCA  741

seq1  TGCTACAACAATGGGCATAGATTTGGCCTGAGAGGAAGGATGGAGTTGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAACAATGGGCATAGATTTGGCCTGAGAGGAAGGATGGAGTTGGG  791

seq1  CCGAAAAACAGTCTCTTGGATACCATGGGGCAACACCCAGGGCACTTGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAAACAGTCTCTTGGATACCATGGGGCAACACCCAGGGCACTTGAC  841

seq1  TCTGTCATTGTCCTGTCGTTCCTCTCTTGACTTTACAGGAGCCCCAAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATTGTCCTGTCGTTCCTCTCTTGACTTTACAGGAGCCCCAAAGA  891

seq1  GTTTTGCCTGAGTTATTCTGGGGTAGGAAAGTTTGCGTCTTGCTACCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCTGAGTTATTCTGGGGTAGGAAAGTTTGCGTCTTGCTACCTCA  941

seq1  TATTATTCTGACCTGTTTGTTGTCCACTCAGCTAGAGGTTAAAATACTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCTGACCTGTTTGTTGTCCACTCAGCTAGAGGTTAAAATACTCT  991

seq1  GCAGTGGTCTATAGTCTCCTCTGGTCTTGGTCCCAGCAGTCGTCTCCAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTCTATAGTCTCCTCTGGTCTTGGTCCCAGCAGTCGTCTCCAGA  1041

seq1  CCTACTAGAAAAGAAGAATTC  1069
      |||||||||||||||||||||
seq2  CCTACTAGAAAAGAAGAATTC  1062

seq1: chr11_99964330_99965465
seq2: B6Ng01-278B09.g_66_1209

seq1  GAATTCCTCTAAAATGGGGAAGAAAAGCTATTGAGGGGAAGGAATCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTAAAATGGGGAAGAAAAGCTATTGAGGGGAAGGAATCCCAC  50

seq1  CCTAAATACCCTGGCATCCGCACACAGTTGTGGTTTGGCCCTGTGATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATACCCTGGCATCCGCACACAGTTGTGGTTTGGCCCTGTGATAAC  100

seq1  AAATGGCCAGCACACTGGTAAGTCGGAGAGCCTTTAATGGGCAGAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCAGCACACTGGTAAGTCGGAGAGCCTTTAATGGGCAGAGACCA  150

seq1  CCCACCATGCTCTGTTGAGCCTGCAGCTCGATCTCCAGGGAGTTGACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATGCTCTGTTGAGCCTGCAGCTCGATCTCCAGGGAGTTGACTGT  200

seq1  GCGTCTCAGCTCAATGATCTCTGTCTGGCAACACTGCAGCTGCTCTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTCAGCTCAATGATCTCTGTCTGGCAACACTGCAGCTGCTCTGAGC  250

seq1  TGGATACCACCTGCTGGTTCAGCTCCTCGGTCTACAGAGAAGGAGAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACCACCTGCTGGTTCAGCTCCTCGGTCTACAGAGAAGGAGAGAAT  300

seq1  GAAGAACAGGGACAGACCTAGGGCTCCTCATTTATCCCACCCACAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACAGGGACAGACCTAGGGCTCCTCATTTATCCCACCCACAGCCTG  350

seq1  TAGTCCTGGATCGCCAGCCTCACCTGAGTGTTGAACCAAGCCTCCACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTGGATCGCCAGCCTCACCTGAGTGTTGAACCAAGCCTCCACATC  400

seq1  TCTACGGTTATTCTCCACCAGCGTCTCATACTGGCATCGCATGTCATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGGTTATTCTCCACCAGCGTCTCATACTGGCATCGCATGTCATCCA  450

seq1  GTATCTTGTTGAGATCCACTGGGGGAGCAGCATCCACCTCCACATTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGTTGAGATCCACTGGGGGAGCAGCATCCACCTCCACATTCAGT  500

seq1  CGGTCCCCAAGCTGGGAACGGAGGGCATTGACTTCCTGCAGTGGCCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCCCAAGCTGGGAACGGAGGGCATTGACTTCCTGCAGTGGCCAAGT  550

seq1  AAGATAGCATGAGGCTGTGGAAAGGTTCCTGTGGCTTGGTAGGTTCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCATGAGGCTGTGGAAAGGTTCCTGTGGCTTGGTAGGTTCAATG  600

seq1  ACCTGGATTCTAAACTCTCATCCCTCTCTTGGGTACCATGAGATAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATTCTAAACTCTCATCCCTCTCTTGGGTACCATGAGATAAAAGA  650

seq1  GCTGACCTCTTTGAACATGCCCCCCCACACACACGCACACACACTCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTCTTTGAACATGCCCCCCCACACACACGCACACACACTCCATT  700

seq1  GGACTGTCTATGCTAACCCCTACTGAGGATTTGGGGGATGACACAGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTCTATGCTAACCCCTACTGAGGATTTGGGGGATGACACAGCACC  750

seq1  AAGCAAATAGAATTATTATCAGACACCATAATCCAAATTCAGTTGCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATAGAATTATTATCAGACACCATAATCCAAATTCAGTTGCACCA  800

seq1  TCCTGGGTGAGGGTGGACTCTCTGTGTGACTGCAGGCAAATGACTTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTGAGGGTGGACTCTCTGTGTGACTGCAGGCAAATGACTTCACA  850

seq1  TCTTTATGACTAACTTCCCAGCTGTAAAATGGAGCTTACGGT-GGGAGCT  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTTTATGACTAACTTCCCAGCTGTAAAATGGAGCTTACGGTGGGGAGCT  900

seq1  AACTCTTAGAATCATGGTGAA-GGTGAGACAGATGTAAAGTGTTTCACAT  948
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACTCTTAGAATCATGGTGAACGGTGAGACAGATGTAAAGTGTTTCACAT  950

seq1  CCTGCCATACAA-TAAGCCCAAGGGCCAGCAGGGATTCCTCAGTGGGATG  997
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  CCTGCCATACAATTAAGCCCAA-GGCCAGCAGGGATTCCTCAGTGGGATG  999

seq1  GGAACCCCGGGGAT-CACGTGGCAGCAACCTCACCTCTTCATGGTTCCTC  1046
      ||||||| |||||| |||||||||||||||||||||||||||||||| ||
seq2  GGAACCCGGGGGATCCACGTGGCAGCAACCTCACCTCTTCATGGTTCTTC  1049

seq1  TTGAGACACAGCAGCTCCTCCTTCAGGGACTCAACCT-GTGCCTCCAGGT  1095
      ||||||||||||||||||| ||||| ||||||||||| |||||| |||||
seq2  TTGAGACACAGCAGCTCCT-CTTCA-GGACTCAACCTGGTGCCT-CAGGT  1096

seq1  CAGCCTT-ACACAAGG-TCAG--CTCATCCA--AGATCC-GGCGTAGA  1136
      |||| || |||||||| ||||   |||||||  |||||| ||||||||
seq2  CAGCTTTAACACAAGGTTCAGGCTTCATCCAAGAGATCCGGGCGTAGA  1144