BAC Information

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BAC

Clone NameB6Ng01-278E13
Chromosome11 (Build37)
Map Location 8,184,289 - 8,380,940
singlet/doubletdoublet
Overlap geneLOC665380, Tns3
Upstream genenone
Downstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278E13.bB6Ng01-278E13.g
ACCGA078571GA078572
length1,142739
definitionB6Ng01-278E13.b B6Ng01-278E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,379,802 - 8,380,940)(8,184,289 - 8,185,050)
sequence
gaattccacatcccagagattggattttgaatattttggtgccattgtct
tctttctttggtaccctaaagcatttgccattgcacctctgacactgata
catggctgtttactgatttgctgagtgatgcagagtgaactctcagctcc
gaaactgggctgctgctcaccacttcagtgatgagtggattatggacctt
tcatgaagaaaggcctgcttgctcagcagtctccatgggtactcctactc
tttctgacctgtcttctttgtcaccattgctggggcggatgcaggcacct
tggatctaaggctgctgctgtcccctaagactttctctcactaagccttg
ttagtcctgctgtgtccgacttccatcccaggaccacacatcttgagagt
taggatggccgcctgtctctctgagagtgaattttggtgaccttgtgtga
agtctcctccctgtgcagcagacactttacagatggggccatctcctcag
cccccatttagttactgttcttgagatagcttctcagcacctagtccaga
ctgactttgaacccacggtggccctgcttcatggagtcacatgctcgccc
ctccatatttgtagggattttgtgtttttagcttaagcctagactgccaa
caaatcctcctttgttatgaaagactgcattgtgacttgaaacattatca
cctttgtaggctgctgcaggtaacccctattgcccaattttaagaatttc
cctggaagaaagtttaaaaagctaaccagctagccaagacctatttttct
gcccaacaagacgatcaggcttggctaagagcaggaaccaggtacccctg
ggtcaggagtaaatgcctgtggagattctggcactgggttgttaaatgtt
cattcttagtgttccccatgtgaagactcagtttgccacacaaagcctca
tgcctggctcactgcggtgctcacttcttataacaggcctggggctggat
ctttagctggtctttcttgaacttggagcttagccatagtcctacttttc
ctagcattgtgggctgagttctggcacctgccttgccctttctgatggag
tgctctgactttgtcctctgggccatccataagcctgcccat

gaattcattcgacctcagaagcccaaatccaatagagaaggcacaaacga
aaaggggaggggcagactgtgggatataccccaagcaaatatgggagagc
tgtgtaaggattccgtaaaacaaatacatctcaaaagtttattctggagt
tctgggagttcttcggacaacaatgacttttccttttccttttccttttc
cttttccttttccttttccttttccttttccttttcctttccctttcccg
tttccgtttccttttccttttccttttcctttttcttttttctctttcac
tcaggagtatttctcaaaggggcacagcgtgtgacctttcaatgtgccat
tttgtcctactttgctctactttgctctcgttgctctgagaaacaccaca
accaaaagcaacttggggaggaaagggtttattcagctcacactcttgga
ccccattccatcatgaaggaagtgagagcaggaactgtaggcggaagcca
gaagtggcactgaagcaagtcatgcgataactctgcttactggtttatcc
acctagcttccatactgctgccttccttctaccttccagatcatcttcta
ggactaccacagcagctgtgccctccacatcacttgtaatcaagaacgag
ctacacatagatgttctcgtataccatctgatggagtttctcattaagtt
cctctccagatatatctagtctgtgtcagttacaagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_8379802_8380940
seq2: B6Ng01-278E13.b_47_1188 (reverse)

seq1  ATGGGCAGGC-TATGGGATGCCCAGA-GAC-AAGTCAGAGCACTCCATCC  47
      |||||||||| |||||   ||||||| ||| ||||||||||||||||| |
seq2  ATGGGCAGGCTTATGGATGGCCCAGAGGACAAAGTCAGAGCACTCCAT-C  49

seq1  AGAAAGGGCAAGGCAGGTGCCAGAACTCAGCCCACAATGCTAGG-ACAGT  96
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  AGAAAGGGCAAGGCAGGTGCCAGAACTCAGCCCACAATGCTAGGAAAAGT  99

seq1  A-GACTATGGCTAAGCT-CAAGTTCAGAGAGA-ACCAGCT-AAGATCCAG  142
      | ||||||||||||||| |||||||| ||| | ||||||| |||||||||
seq2  AGGACTATGGCTAAGCTCCAAGTTCA-AGAAAGACCAGCTAAAGATCCAG  148

seq1  CCCCAGGCCTGTTATAAGAAGGTGAGCACCCGCAGTGAGCCAGGCATGAG  192
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  CCCCAGGCCTGTTATAAGAA-GTGAGCA-CCGCAGTGAGCCAGGCATGAG  196

seq1  GCTTTGTTGTGGCAAACTGAGTCTTCACATGGGGGAACACTAAGAATGAA  242
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTTTG-TGTGGCAAACTGAGTCTTCACAT-GGGGAACACTAAGAATGAA  244

seq1  CATTTAACAACCCAGTGCCAGAATCTCCACAGGCATTTACTCCTGACCCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACAACCCAGTGCCAGAATCTCCACAGGCATTTACTCCTGACCCA  294

seq1  GGGGTACCTGGTTCCTGCTCTTAGCCAAGCCTGATCGTCTTGTTGGGCAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACCTGGTTCCTGCTCTTAGCCAAGCCTGATCGTCTTGTTGGGCAG  344

seq1  AAAAATAGGTCTTGGCTAGCTGGTTAGCTTTTTAAACTTTCTTCCAGGG-  391
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAAATAGGTCTTGGCTAGCTGGTTAGCTTTTTAAACTTTCTTCCAGGGA  394

seq1  AATTCTTAAAATTGGGCAATAGGGGTTACCTGCAGCAGCCTACAAAGGTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAAAATTGGGCAATAGGGGTTACCTGCAGCAGCCTACAAAGGTG  444

seq1  ATAATGTTTCAAGTCACAATGCAGTCTTTCATAACAAAGGAGGATTTGTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTTCAAGTCACAATGCAGTCTTTCATAACAAAGGAGGATTTGTT  494

seq1  GGCAGTCTAGGCTTAAGCTAAAAACACAAAATCCCTACAAATATGGAGGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCTAGGCTTAAGCTAAAAACACAAAATCCCTACAAATATGGAGGG  544

seq1  GCGAGCATGTGACTCCATGAAGCAGGGCCACCGTGGGTTCAAAGTCAGTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCATGTGACTCCATGAAGCAGGGCCACCGTGGGTTCAAAGTCAGTC  594

seq1  TGGACTAGGTGCTGAGAAGCTATCTCAAGAACAGTAACTAAATGGGGGCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAGGTGCTGAGAAGCTATCTCAAGAACAGTAACTAAATGGGGGCT  644

seq1  GAGGAGATGGCCCCATCTGTAAAGTGTCTGCTGCACAGGGAGGAGACTTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGGCCCCATCTGTAAAGTGTCTGCTGCACAGGGAGGAGACTTC  694

seq1  ACACAAGGTCACCAAAATTCACTCTCAGAGAGACAGGCGGCCATCCTAAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGTCACCAAAATTCACTCTCAGAGAGACAGGCGGCCATCCTAAC  744

seq1  TCTCAAGATGTGTGGTCCTGGGATGGAAGTCGGACACAGCAGGACTAACA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGATGTGTGGTCCTGGGATGGAAGTCGGACACAGCAGGACTAACA  794

seq1  AGGCTTAGTGAGAGAAAGTCTTAGGGGACAGCAGCAGCCTTAGATCCAAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGTGAGAGAAAGTCTTAGGGGACAGCAGCAGCCTTAGATCCAAG  844

seq1  GTGCCTGCATCCGCCCCAGCAATGGTGACAAAGAAGACAGGTCAGAAAGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCATCCGCCCCAGCAATGGTGACAAAGAAGACAGGTCAGAAAGA  894

seq1  GTAGGAGTACCCATGGAGACTGCTGAGCAAGCAGGCCTTTCTTCATGAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGTACCCATGGAGACTGCTGAGCAAGCAGGCCTTTCTTCATGAAA  944

seq1  GGTCCATAATCCACTCATCACTGAAGTGGTGAGCAGCAGCCCAGTTTCGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATAATCCACTCATCACTGAAGTGGTGAGCAGCAGCCCAGTTTCGG  994

seq1  AGCTGAGAGTTCACTCTGCATCACTCAGCAAATCAGTAAACAGCCATGTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAGTTCACTCTGCATCACTCAGCAAATCAGTAAACAGCCATGTA  1044

seq1  TCAGTGTCAGAGGTGCAATGGCAAATGCTTTAGGGTACCAAAGAAAGAAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCAGAGGTGCAATGGCAAATGCTTTAGGGTACCAAAGAAAGAAG  1094

seq1  ACAATGGCACCAAAATATTCAAAATCCAATCTCTGGGATGTGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCACCAAAATATTCAAAATCCAATCTCTGGGATGTGGAATTC  1142


seq1: chr11_8184289_8185050
seq2: B6Ng01-278E13.g_64_802

seq1  GAATTCATTCGACCTCAGAAGCCCAAATCCAATAGAGAAGGCACAAACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCGACCTCAGAAGCCCAAATCCAATAGAGAAGGCACAAACGA  50

seq1  AAAGGGGAGGGGCAGACTGTGGGATATACCCCAAGCAAATATGGGAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGAGGGGCAGACTGTGGGATATACCCCAAGCAAATATGGGAGAGC  100

seq1  TGTGTAAGGATTCCGTAAAACAAATACATCTCAAAAGTTTATTCTGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGGATTCCGTAAAACAAATACATCTCAAAAGTTTATTCTGGAGT  150

seq1  TCTGGGAGTTCTTCGGACAACAATGACTTTTCCTTTTCCTTTTCCTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGTTCTTCGGACAACAATGACTTTTCCTTTTCCTTTTCCTTTTC  200

seq1  CTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTCCCTTTCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTCCCTTTCCCG  250

seq1  TTTCCGTTTCCTTTTCCTTTTCCTTTTCCTTTTTCTTTTTTCTCTTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTTTCCTTTTCCTTTTCCTTTTCCTTTTTCTTTTTTCTCTTTCAC  300

seq1  TCAGGAGTATTTCTCAAAGGGGCACAGCGTGTGACCTTTCAATGTGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTATTTCTCAAAGGGGCACAGCGTGTGACCTTTCAATGTGCCAT  350

seq1  TTTGTCCTACTTTGCTCTACTTTGCTCTCGTTGCTCTGAGAAACACCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTACTTTGCTCTACTTTGCTCTCGTTGCTCTGAGAAACACCACA  400

seq1  ACCAAAAGCAACTTGGGGAGGAAAGGGTTTATTCAGCTCACACTCTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGCAACTTGGGGAGGAAAGGGTTTATTCAGCTCACACTCTTGGA  450

seq1  CCCCATTCCATCATGAAGGAAGGTGAGAGCAGGAACTGTAGGCGGAAGCC  500
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCCATTCCATCATGAAGGAA-GTGAGAGCAGGAACTGTAGGCGGAAGCC  499

seq1  AGAAGGTGGGCACTGAAGCAAAGGTCATGCGATAACTCTGCTTACTGGTT  550
      |||||   |||||||||||||  |||||||||||||||||||||||||||
seq2  AGAAG--TGGCACTGAAGCAA--GTCATGCGATAACTCTGCTTACTGGTT  545

seq1  TATCCACCTAGCTTCCATACTGCTGCCTTCCTTCTACCTTCCAGGATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATCCACCTAGCTTCCATACTGCTGCCTTCCTTCTACCTTCCA-GATCAT  594

seq1  CTTCTAGGGACTACCCACAGCCAGCTGTGCCCCTCCACATCACTTGGTAA  650
      |||||| |||||| |||||| |||||||| ||||||||||||||| ||||
seq2  CTTCTA-GGACTA-CCACAG-CAGCTGTG-CCCTCCACATCACTT-GTAA  639

seq1  TCAAGAACGAGCTACACATAGATGTTCTCGTATACCAATCTGATGGAGGT  700
      |||||||||||||||||||||||||||||||||||| |||||||||||  
seq2  TCAAGAACGAGCTACACATAGATGTTCTCGTATACC-ATCTGATGGAG--  686

seq1  TTTCTCAATTAAGGTTTCCTCTTCCCAGATATATCTAGGTCTGTGTCAAG  750
      |||||| ||||||  |||||||  ||||||||||||| ||||||||| ||
seq2  TTTCTC-ATTAAG--TTCCTCT--CCAGATATATCTA-GTCTGTGTC-AG  729

seq1  TTAACAAAGATA  762
      |||   ||||||
seq2  TTA--CAAGATA  739


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