BAC Information

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BAC

Clone NameB6Ng01-278H21
Chromosome11 (Build37)
Map Location 95,692,755 - 95,842,047
singlet/doubletdoublet
Overlap genePhospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1
Upstream geneLOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273
Downstream geneLOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278H21.bB6Ng01-278H21.g
ACCGA078722GA078723
length1,162564
definitionB6Ng01-278H21.b B6Ng01-278H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,840,887 - 95,842,047)(95,692,755 - 95,693,323)
sequence
gaattcaccccaagtctttcctaagcgctttacaaacactatctaatgcc
acctcccacttgtgaatggggtttatccttgttgtacaaagcggggggag
accaggtctcaaagaacttaagtaatcttctaatgtgctaataagtggtt
tagatccctagttgtgccaagggcttaaccactgtactattattatctta
tgcaattgttcgcatatattgtttcccttaatacgatgtgagcgcctggg
tcaggcattccgccacttttgttcattgctgtgccccagtcctgcgagca
aagtacagcttgaagtaggtgctagttaaagaggtgttggattaattaat
agttaccgtcttacttgactttggatttgctttattttaagtacgtatgt
gtgggtatgtaaccagtgggtcaggtgctggagatgagctggggttcaag
cagttgtgagctgcctctcacatgggctctaggagcgggactcctgtcct
ataagagccccaagcaccctttctctagcttcttggctttgttttgatgg
agagagaagtatgggaccgctgtagcaagcatcaaaacagtatgttcgat
cttctgctgccgttacgctgagaacatctggttccgagttcctctctgac
gtcctattagtgctcgggcttatagggtgaagccttgtttgctcgaaagt
ctgcatccttactgggttgctagtctgtgtttctttgttttttcctgaga
tgaggtctcactgtttattccggctgtcctgtaattaactatggagatca
ggttggcctggaactcagagatctgcttgtctctgcctcttaagagcttg
gattaaaggcaactgctcccagtttaggttactattttttagggctgggg
atctagcttgtgccagaccatgaattcagtccctagccactgggggagga
agccaccatcctatggtttggtgaactaacaagctgggacaggattagaa
ctgccaggtcatgggcccaaagcatctggattgtctaaatcatgtttttg
cctttctttttcaagaagtcgaaaatacaggatccgccatattcacctca
gcttcgaatgggaagtaagtgtttggaaaagttaatggtacagattggtg
gaaactggtcat
agtctgcttgtgggctgggagcaggggttcagagccgtccctatctatgc
agttaacacagctctgctgccttccctccagggaggtgagcaccccttgg
aaggcaggcagtgcccctcgaactgagaggaacgggttcctggaagttgg
gagaaggaacatctcccacttactttagctgctgtaccggctgcataacc
tcctctgcccagtctttcaaacggactcaggatcccccaatccgcatgcc
agtaccagattcctcgcggcagacctatgatgctctcagaagacagctct
aggtcttgatcttgcttcagccaacgcaaccctacactaccgctgcgctg
gctgcgccttgcttccttccccctctccacccccaccccacccccgccca
ccatacaccccccacccacccaaaggaagaaaaagtcagaaggaactacc
gcctcctgctggtagaacgaggtagaagtacctaccactgacctcggaga
gtgtgaaaaatcctatcactccagcaagagaccagggacttcaccaaagt
cgtccccgtccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95840887_95842047
seq2: B6Ng01-278H21.b_49_1210 (reverse)

seq1  ATGACCAGTCTCCACCAAACCTGTA-CATTAACTTCTCCAAACACTTACT  49
      ||||||||| |||||| || ||||| ||||||||| ||||||||||||||
seq2  ATGACCAGTTTCCACC-AATCTGTACCATTAACTTTTCCAAACACTTACT  49

seq1  TCCCA-TCGGAGCTGAGGTGGAATATTGCGGAT-CTGTATTTTCCGACTC  97
      ||||| ||| ||||||||| |||||| |||||| ||||||||| ||||| 
seq2  TCCCATTCGAAGCTGAGGT-GAATATGGCGGATCCTGTATTTT-CGACTT  97

seq1  CT--GAAAAGAAAGGGCAAAACATGATTTAGACAATTCCAGATGCTTTGG  145
      ||   ||||||||||  |||||||||||||||||| ||||||||||||||
seq2  CTTGAAAAAGAAAGGCAAAAACATGATTTAGACAA-TCCAGATGCTTTGG  146

seq1  GCCCATGACCTGGCAGTTTCTAATCCTTGTCCCAGCTTGTTAGTTCACCA  195
      |||||||||||||||| ||||||||| |||||||||||||||||||||| 
seq2  GCCCATGACCTGGCAG-TTCTAATCC-TGTCCCAGCTTGTTAGTTCACC-  193

seq1  AAACCATAGGATGGTGGCTTCCT-CCCCAGT-GCTAGGGACTGAATTCAT  243
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  AAACCATAGGATGGTGGCTTCCTCCCCCAGTGGCTAGGGACTGAATTCAT  243

seq1  GGTCTGGCACAAGCTAGATCCCCAGCCCT-AAAAATAGTAACCTAAACTG  292
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTCTGGCACAAGCTAGATCCCCAGCCCTAAAAAATAGTAACCTAAACTG  293

seq1  GGAGCAGTTGCCTTTAATCCAAGCTCTTAAGAGGCAGAGACAAGCAGATC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGTTGCCTTTAATCCAAGCTCTTAAGAGGCAGAGACAAGCAGATC  343

seq1  TCTGAGTTCCAGGCCAACCTGATCTCCATAGTTAATTACAGGACAGCCGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCCAGGCCAACCTGATCTCCATAGTTAATTACAGGACAGCCGG  393

seq1  AATAAACAGTGAGACCTCATCTCAGGAAAAAACAAAGAAACACAGACTAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGTGAGACCTCATCTCAGGAAAAAACAAAGAAACACAGACTAG  443

seq1  CAACCCAGTAAGGATGCAGACTTTCGAGCAAACAAGGCTTCACCCTATAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAGTAAGGATGCAGACTTTCGAGCAAACAAGGCTTCACCCTATAA  493

seq1  GCCCGAGCACTAATAGGACGTCAGAGAGGAACTCGGAACCAGATGTTCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAGCACTAATAGGACGTCAGAGAGGAACTCGGAACCAGATGTTCTC  543

seq1  AGCGTAACGGCAGCAGAAGATCGAACATACTGTTTTGATGCTTGCTACAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAACGGCAGCAGAAGATCGAACATACTGTTTTGATGCTTGCTACAG  593

seq1  CGGTCCCATACTTCTCTCTCCATCAAAACAAAGCCAAGAAGCTAGAGAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCCATACTTCTCTCTCCATCAAAACAAAGCCAAGAAGCTAGAGAAA  643

seq1  GGGTGCTTGGGGCTCTTATAGGACAGGAGTCCCGCTCCTAGAGCCCATGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTGGGGCTCTTATAGGACAGGAGTCCCGCTCCTAGAGCCCATGT  693

seq1  GAGAGGCAGCTCACAACTGCTTGAACCCCAGCTCATCTCCAGCACCTGAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCAGCTCACAACTGCTTGAACCCCAGCTCATCTCCAGCACCTGAC  743

seq1  CCACTGGTTACATACCCACACATACGTACTTAAAATAAAGCAAATCCAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTTACATACCCACACATACGTACTTAAAATAAAGCAAATCCAAA  793

seq1  GTCAAGTAAGACGGTAACTATTAATTAATCCAACACCTCTTTAACTAGCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTAAGACGGTAACTATTAATTAATCCAACACCTCTTTAACTAGCA  843

seq1  CCTACTTCAAGCTGTACTTTGCTCGCAGGACTGGGGCACAGCAATGAACA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCAAGCTGTACTTTGCTCGCAGGACTGGGGCACAGCAATGAACA  893

seq1  AAAGTGGCGGAATGCCTGACCCAGGCGCTCACATCGTATTAAGGGAAACA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCGGAATGCCTGACCCAGGCGCTCACATCGTATTAAGGGAAACA  943

seq1  ATATATGCGAACAATTGCATAAGATAATAATAGTACAGTGGTTAAGCCCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCGAACAATTGCATAAGATAATAATAGTACAGTGGTTAAGCCCT  993

seq1  TGGCACAACTAGGGATCTAAACCACTTATTAGCACATTAGAAGATTACTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAACTAGGGATCTAAACCACTTATTAGCACATTAGAAGATTACTT  1043

seq1  AAGTTCTTTGAGACCTGGTCTCCCCCCGCTTTGTACAACAAGGATAAACC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTTGAGACCTGGTCTCCCCCCGCTTTGTACAACAAGGATAAACC  1093

seq1  CCATTCACAAGTGGGAGGTGGCATTAGATAGTGTTTGTAAAGCGCTTAGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCACAAGTGGGAGGTGGCATTAGATAGTGTTTGTAAAGCGCTTAGG  1143

seq1  AAAGACTTGGGGTGAATTC  1161
      |||||||||||||||||||
seq2  AAAGACTTGGGGTGAATTC  1162

seq1: chr11_95692755_95693323
seq2: B6Ng01-278H21.g_68_637

seq1  GAATTCAGTCTGCTTGTGGGCTGGGAGCAGGGGTTCAGAGCCGTCCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTGCTTGTGGGCTGGGAGCAGGGGTTCAGAGCCGTCCCTAT  50

seq1  CTATGCAGTTAACACAGCTCTGCTGCCTTCCCTCCAGGGAGGTGAGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGTTAACACAGCTCTGCTGCCTTCCCTCCAGGGAGGTGAGCACC  100

seq1  CCTTGGAAGGCAGGCAGTGCCCCTCGAACTGAGAGGAACGGGTTCCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAAGGCAGGCAGTGCCCCTCGAACTGAGAGGAACGGGTTCCTGGA  150

seq1  AGTTGGGAGAAGGAACATCTCCCACTTACTTTAGCTGCTGTACCGGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGAGAAGGAACATCTCCCACTTACTTTAGCTGCTGTACCGGCTGC  200

seq1  ATAACCTCCTCTGCCCAGTCTTTCAAACGGACTCAGGATCCCCCAATCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTCCTCTGCCCAGTCTTTCAAACGGACTCAGGATCCCCCAATCCG  250

seq1  CATGCCAGTACCAGATTCCTCGCGGCAGACCTATGATGCTCTCAGAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGTACCAGATTCCTCGCGGCAGACCTATGATGCTCTCAGAAGAC  300

seq1  AGCTCTAGGTCTTGATCTTGCTTCAGCCAACGCAACCCTACACTACCGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGGTCTTGATCTTGCTTCAGCCAACGCAACCCTACACTACCGCT  350

seq1  GCGCTGGCTGCGCCTTGCTTCCTTCCCCCTCTCCACCCCCACCCCACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGCTGCGCCTTGCTTCCTTCCCCCTCTCCACCCCCACCCCACCCC  400

seq1  CGCCCACCAGACACCCCCCACCCACCCAAAGGAAGAAAAAGTCAGAAGGA  450
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACCATACACCCCCCACCCACCCAAAGGAAGAAAAAGTCAGAAGGA  450

seq1  ACTACCGCCTCCTGCTGGTAGAACGAGGTAGAAGAACCGACCACTGACCT  500
      |||||||||||||||||||||||||||||||||| ||| |||||||||||
seq2  ACTACCGCCTCCTGCTGGTAGAACGAGGTAGAAGTACCTACCACTGACCT  500

seq1  CGGAGAGTGTGAAAAATCCTAGCACTCCAGCAAGAGACCAGGGACTTCAC  550
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGGAGAGTGTGAAAAATCCTATCACTCCAGCAAGAGACCAGGGACTTCAC  550

seq1  CAAAGTCGTCCCC-TCCCCC  569
      ||||||||||||| ||||||
seq2  CAAAGTCGTCCCCGTCCCCC  570