BAC Information

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BAC

Clone NameB6Ng01-278I20
Chromosome11 (Build37)
Map Location 73,071,606 - 73,197,305
singlet/doubletdoublet
Overlap geneTrpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376
Upstream geneSlc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl
Downstream geneOlfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278I20.bB6Ng01-278I20.g
ACCGA078766GA078767
length954970
definitionB6Ng01-278I20.b B6Ng01-278I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,071,606 - 73,072,557)(73,196,343 - 73,197,305)
sequence
gaattcaggggagaaaggccagggaaggaaggtgggaactggaaggacta
ggaagtgtgtgggagcttcagtgaatggcttctctactggtataacaagt
cgaactgagctgaacttatagttcgttgtgggtagctctcaggcaggttc
actgacctcacaggagggggtcagtggaatcacaaggctgggctgaggca
aggcttcctaaaggggtgtgggtagatcttcaatgtgatggtgggggtac
aaataaggttatattataaccttattttgtgattttagggccctgtaggt
gggacttagaaccagtggtcagttttgagaatcctgaactaggagctggc
tttgtccagcgttttgtgtgggcttttgaaagcgagggctcctgatcaga
agagaagggtggggatctcttggcccaggccatcttgcctttgttccaaa
ccctctggcctaacacttggtattagaatatgatggatggtgatgggaac
ctcagctacctctggagaccctggaactggctaggtcaacagttcccaaa
ctgggtgtctctacttcctagccaattagtccagatctcaacaggcagtg
gtaactgagtcttccttaagagctccctggaactttaggtcatgccaaag
ttcttatttgaagcccagtgtcaccatgtctcccttggcattttcttcta
tgccctggtggggccttgactctaagtcttgatgttttttggctgctgtt
catcactttaggattgcccaatgtggagttgtgttgcagaaatctcttta
ccctctcatttgggcagagaggcaataaagcctgaagcaggtgtgagata
gactccatgaattatcaggtttaccagggcctgggggagaaaggaagtat
aaactggttgatgagctcaactgtcaaagaagaaagaaaatttcatgggt
ttaa
gaattctttgactgcttagggtggaggcagggataagcagcaggttgtaa
ctcaatcaagataccatttggtgggatgggactgaagctgggagggagat
aaaaaagtgtcttttgtgaggttatcaggaactaatttttatggcctgcc
ataattgtctgtgacctctgattaccttttctctatgatttaaatgtgag
gccttaatcttctttgagtttgttatttctttaaggtcccaagaacaggc
acttggagagttcaaccatttatcagagggagagctagtttttggtgaca
cagaggcagggaggctgtcttaagctagcatctgactcctctgggtgttt
gcattaaggggggttttatgggcagtacaattctaagaccagattgggtt
cccttggaatgaccagggagaggaagggagccctgagcttgctgcaaggg
gacgcagcatggaaaccaactgcctgcatattgcacttgccacagaaggg
agggaagatgggaacttttgctggaggaaacaacacagaggcaaaccgtc
tatacacaacactggagtctctttggtgaggcttctaagaagcaggaaaa
taaaccacagagagttagcatcagtaatttggaggctataatagatctat
ttctaattttctggggaacctccagattgatttccagagtgattgtacca
gtttgcaatcccaccaacaatggaggagtgttcctctttctacaatcctc
tcccaacatgttgttgtcacctgaggttttgatcttagccattctgattt
gtataaaggcagaattctcagggttcatttgtatttgcattcttctaatc
actaacggactttgaacatttctttaaggtacttctcagcctctggagat
tcccctgttgtgaatcctcagtttagtttataccctaatttttttattgg
gtggctcagggattttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73071606_73072557
seq2: B6Ng01-278I20.b_43_996

seq1  GAATTCAGGGGAGAAAGGCCAGGGAAGGAAGGTGGGAACTGGAAGGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGAGAAAGGCCAGGGAAGGAAGGTGGGAACTGGAAGGACTA  50

seq1  GGAAGTGTGTGGGAGCTTCAGTGAATGGCTTCTCTACTGGTATAACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGTGTGGGAGCTTCAGTGAATGGCTTCTCTACTGGTATAACAAGT  100

seq1  CGAACTGAGCTGAACTTATAGTTCGTTGTGGGTAGCTCTCAGGCAGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTGAGCTGAACTTATAGTTCGTTGTGGGTAGCTCTCAGGCAGGTTC  150

seq1  ACTGACCTCACAGGAGGGGGTCAGTGGAATCACAAGGCTGGGCTGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTCACAGGAGGGGGTCAGTGGAATCACAAGGCTGGGCTGAGGCA  200

seq1  AGGCTTCCTAAAGGGGTGTGGGTAGATCTTCAATGTGATGGTGGGGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCTAAAGGGGTGTGGGTAGATCTTCAATGTGATGGTGGGGGTAC  250

seq1  AAATAAGGTTATATTATAACCTTATTTTGTGATTTTAGGGCCCTGTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGTTATATTATAACCTTATTTTGTGATTTTAGGGCCCTGTAGGT  300

seq1  GGGACTTAGAACCAGTGGTCAGTTTTGAGAATCCTGAACTAGGAGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTAGAACCAGTGGTCAGTTTTGAGAATCCTGAACTAGGAGCTGGC  350

seq1  TTTGTCCAGCGTTTTGTGTGGGCTTTTGAAAGCGAGGGCTCCTGATCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCAGCGTTTTGTGTGGGCTTTTGAAAGCGAGGGCTCCTGATCAGA  400

seq1  AGAGAAGGGTGGGGATCTCTTGGCCCAGGCCATCTTGCCTTTGTTCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGTGGGGATCTCTTGGCCCAGGCCATCTTGCCTTTGTTCCAAA  450

seq1  CCCTCTGGCCTAACACTTGGTATTAGAATATGATGGATGGTGATGGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGCCTAACACTTGGTATTAGAATATGATGGATGGTGATGGGAAC  500

seq1  CTCAGCTACCTCTGGAGACCCTGGAACTGGCTAGGTCAACAGTTCCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTACCTCTGGAGACCCTGGAACTGGCTAGGTCAACAGTTCCCAAA  550

seq1  CTGGGTGTCTCTACTTCCTAGCCAATTAGTCCAGATCTCAACAGGCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTCTCTACTTCCTAGCCAATTAGTCCAGATCTCAACAGGCAGTG  600

seq1  GTAACTGAGTCTTCCTTAAGAGCTCCCTGGAACTTTAGGTCATGCCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGAGTCTTCCTTAAGAGCTCCCTGGAACTTTAGGTCATGCCAAAG  650

seq1  TTCTTATTTGAAGCCCAGTGTCACCATGTCTCCCTTGGCATTTTCTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTGAAGCCCAGTGTCACCATGTCTCCCTTGGCATTTTCTTCTA  700

seq1  TGCCCTGGTGGGGCCTTGACTCTAAGTCTTGATGTTTTTTGGCTGCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGTGGGGCCTTGACTCTAAGTCTTGATGTTTTTTGGCTGCTGTT  750

seq1  CATCACTTTAGGATTGCCCAATGTGGAGTTGTGTTGCAGAAATCTCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTTAGGATTGCCCAATGTGGAGTTGTGTTGCAGAAATCTCTTTA  800

seq1  CCCTCTCATTTGGGCAGAGAGGCAATAAAGCCTGAAGCAGGTGTGAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCATTTGGGCAGAGAGGCAATAAAGCCTGAAGCAGGTGTGAGATA  850

seq1  GACT-CATGAATTATCAGGTTTACCAGGGCCTGGGGGAGAAAGGAAGTAT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATGAATTATCAGGTTTACCAGGGCCTGGGGGAGAAAGGAAGTAT  900

seq1  AAACTGGGTGAATGAGCTCAACTGTCAAAGAAG--AGGAAATTTCATGGG  947
      ||||||| || ||||||||||||||||||||||  || ||||||||||||
seq2  AAACTGGTTG-ATGAGCTCAACTGTCAAAGAAGAAAGAAAATTTCATGGG  949

seq1  TCTAA  952
      | |||
seq2  TTTAA  954

seq1: chr11_73196343_73197305
seq2: B6Ng01-278I20.g_66_1035 (reverse)

seq1  TAAAAAAATCCCTGAGCAACCCAATAAAAAAATTA-GGTATAAAACTAAA  49
      ||||||||||||||||| ||||||||||||||||| ||||| ||||||||
seq2  TAAAAAAATCCCTGAGCCACCCAATAAAAAAATTAGGGTAT-AAACTAAA  49

seq1  CTGAGAATTCACAACAGGGGAATCTCCAGAGGCTGAGAAGTACC-TAAAG  98
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGAGGATTCACAACAGGGGAATCTCCAGAGGCTGAGAAGTACCTTAAAG  99

seq1  AAATGTTCAAAGT-CGTTAGTGATTAGAGAAATGCAAATACAAATG-ACC  146
      ||||||||||||| ||||||||||||||  |||||||||||||||| |||
seq2  AAATGTTCAAAGTCCGTTAGTGATTAGAAGAATGCAAATACAAATGAACC  149

seq1  CTGAG-ATTCTGCC-TTATACAAATCAGAATGGCTAAGATCAAAACCTCA  194
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTCTGCCTTTATACAAATCAGAATGGCTAAGATCAAAACCTCA  199

seq1  GGTGACAAC-ACATGTT-GGAGAGGATTGTAGAAAGAGGAACACTCCTCC  242
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  GGTGACAACAACATGTTGGGAGAGGATTGTAGAAAGAGGAACACTCCTCC  249

seq1  ATTGTTGGTGGGATTGCAAACTGGTACAATCACTCTGGAAATCAATCTGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGTGGGATTGCAAACTGGTACAATCACTCTGGAAATCAATCTGG  299

seq1  AGGTTCCCCAGAAAATTAGAAATAGATCTATTATAGCCTCCAAATTACTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCCAGAAAATTAGAAATAGATCTATTATAGCCTCCAAATTACTG  349

seq1  ATGCTAACTCTCTGTGGTTTATTTTCCTGCTTCTTAGAAGCCTCACCAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACTCTCTGTGGTTTATTTTCCTGCTTCTTAGAAGCCTCACCAAA  399

seq1  GAGACTCCAGTGTTGTGTATAGACGGTTTGCCTCTGTGTTGTTTCCTCCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCCAGTGTTGTGTATAGACGGTTTGCCTCTGTGTTGTTTCCTCCA  449

seq1  GCAAAAGTTCCCATCTTCCCTCCCTTCTGTGGCAAGTGCAATATGCAGGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTTCCCATCTTCCCTCCCTTCTGTGGCAAGTGCAATATGCAGGC  499

seq1  AGTTGGTTTCCATGCTGCGTCCCCTTGCAGCAAGCTCAGGGCTCCCTTCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTTCCATGCTGCGTCCCCTTGCAGCAAGCTCAGGGCTCCCTTCC  549

seq1  TCTCCCTGGTCATTCCAAGGGAACCCAATCTGGTCTTAGAATTGTACTGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGGTCATTCCAAGGGAACCCAATCTGGTCTTAGAATTGTACTGC  599

seq1  CCATAAAACCCCCCTTAATGCAAACACCCAGAGGAGTCAGATGCTAGCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAACCCCCCTTAATGCAAACACCCAGAGGAGTCAGATGCTAGCTT  649

seq1  AAGACAGCCTCCCTGCCTCTGTGTCACCAAAAACTAGCTCTCCCTCTGAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCCTCCCTGCCTCTGTGTCACCAAAAACTAGCTCTCCCTCTGAT  699

seq1  AAATGGTTGAACTCTCCAAGTGCCTGTTCTTGGGACCTTAAAGAAATAAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTGAACTCTCCAAGTGCCTGTTCTTGGGACCTTAAAGAAATAAC  749

seq1  AAACTCAAAGAAGATTAAGGCCTCACATTTAAATCATAGAGAAAAGGTAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAGAAGATTAAGGCCTCACATTTAAATCATAGAGAAAAGGTAA  799

seq1  TCAGAGGTCACAGACAATTATGGCAGGCCATAAAAATTAGTTCCTGATAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTCACAGACAATTATGGCAGGCCATAAAAATTAGTTCCTGATAA  849

seq1  CCTCACAAAAGACACTTTTTTATCTCCCTCCCAGCTTCAGTCCCATCCCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAAAAGACACTTTTTTATCTCCCTCCCAGCTTCAGTCCCATCCCA  899

seq1  CCAAATGGTATCTTGATTGAGTTACAACCTGCTGCTTATCCCTGCCTCCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGTATCTTGATTGAGTTACAACCTGCTGCTTATCCCTGCCTCCA  949

seq1  CCCTAAGCAGTCAAAGAATTC  963
      |||||||||||||||||||||
seq2  CCCTAAGCAGTCAAAGAATTC  970