BAC Information

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BAC

Clone NameB6Ng01-278K01
Chromosome14 (Build37)11 (Build37)
Map Location 32,090,621 - 32,091,7395,437,515 - 5,437,917
singlet/doubletsingletsinglet
Overlap geneDnahc1
Upstream geneCacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1
Downstream geneCapn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278K01.bB6Ng01-278K01.g
ACCGA078821GA078822
length1,115773
definitionB6Ng01-278K01.b B6Ng01-278K01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,090,621 - 32,091,739)(5,437,515 - 5,437,917)
sequence
gaattctggctttcagaagtcaggtcagcctctgagaagcctgatctatg
agacacaccagtctgcagcaacccgggtaaagccatctggaaactagagg
atgtgcgtgggaaaacccaccagaaggtccactgcaggctcacagcttca
aggccactgatggaaacctcaaccctgtcacccaaggtcctaactgagcc
atggcaccaaaacccttctgctcctttatgaaagaatggcagcatggcaa
atgagcgtagtgtgtcactgctggcaggatttgtctcagatgaactcttg
gtctcacagatgggccgcctcactaaacccatgtgaacgggaaactgggg
ctcagagaagcctaaaggtttgttttttttttttcctatcctgactttct
aatggtgatgagagtgggcctggggtcttccacttatcctatgtagagtt
tctgactctctcggccctatatttggtgttctctggattccaggggatag
actaaagaacacctaccagagtagagcaccaactcaccttactctcactg
gtgatgagctcataagactttacatctgagcctggcgacatgaagtcccc
ataaagaatgggttggaagggacagactttgttgaaggccaccccaaact
cttccatctgggcttcaaggagttcatcaaaccagctgcggtcttcctca
ttcaccaggcggtcacggaacacacggcagttctcatggtaccatagccg
cagcagctgcaccttgtcctgagagtacccagtgtcagggcctgtctggg
tccctggcccgagatcatcatttgaagtgccagggaagacagagtaccag
gggataggagcacggctctcagactagtctctttcctttgactcagagct
agagctacaggcaggaactgctgggagacgtgcctctgcacactgaagac
aagtggatggcagcgtaccctgagccttccctatccccagctcccagggc
ccactagcacaaggactagcagctgcatacctccaaaggtcatcactcca
ctcccctctctctaaacctctcaaactcttaggctggaaaaggaagacct
cacttctatcttctc
gaattctttacgcctggcacttagataatcatttattgtttccattgccc
tgtttttagtgatctatttatttttattttatgtacatttatgttctgcc
tgcttgtgtgtgtgtgagagggcccaatcccctagaactgcagttagagt
tgtgagctctcatgtgggtgctggggattggactcagatctttggaaaag
cagacggtgctcgtaaccaccgagccaactcttttgcatttgcatctgta
ccattttagttttcttttagagtttagagatttatctattttgggtttat
gagacagggtttctctgtgtagccctggctgtcctggaactcactctgta
gatcaggctggtctcgaactcagaaatccacctgcctttgcctcccgagt
gctgggattaaaggcgtgcgccaccaccacccagctatttttctattttt
aattatgtatagtgtgtatgtgcctgcatgtgcgtataaacacggcacac
ctgcagaggtcagaagttgcagatccccggtagctggagttatcggcagc
tgcctgatatggttagtgggaagtcgggtcctctgagaaagcagccttta
ctgctgagccatctctccagcccctagtgttctttttaaaaaaacattgt
ttgtctgtttttttttttttttttttaaagattttatttattatttttat
gtaaatacactgtagctgtcttcagacactccagaagaggggagtcagat
cctgttacggatggttgtgagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_32090621_32091739
seq2: B6Ng01-278K01.b_43_1157

seq1  GAATTCTGGCTTTCAGAAGTCAGGTCAGCCTCTGAGAAGCCTGATCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTTTCAGAAGTCAGGTCAGCCTCTGAGAAGCCTGATCTATG  50

seq1  AGACACACCAGTCTGCAGCAACCCGGGTAAAGCCATCTGGAAACTAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACCAGTCTGCAGCAACCCGGGTAAAGCCATCTGGAAACTAGAGG  100

seq1  ATGTGCGTGGGAAAACCCACCAGAAGGTCCACTGCAGGCTCACAGCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGTGGGAAAACCCACCAGAAGGTCCACTGCAGGCTCACAGCTTCA  150

seq1  AGGCCACTGATGGAAACCTCAACCCTGTCACCCAAGGTCCTAACTGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTGATGGAAACCTCAACCCTGTCACCCAAGGTCCTAACTGAGCC  200

seq1  ATGGCACCAAAACCCTTCTGCTCCTTTATGAAAGAATGGCAGCATGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCAAAACCCTTCTGCTCCTTTATGAAAGAATGGCAGCATGGCAA  250

seq1  ATGAGCGTAGTGTGTCACTGCTGGCAGGATTTGTCTCAGATGAACTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCGTAGTGTGTCACTGCTGGCAGGATTTGTCTCAGATGAACTCTTG  300

seq1  GTCTCACAGATGGGCCGCCTCACTAAACCCATGTGAACGGGAAACTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACAGATGGGCCGCCTCACTAAACCCATGTGAACGGGAAACTGGGG  350

seq1  CTCAGAGAAGCCTAAAGGTTTGTTTTTTTTTTTTCCTATCCTGACTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAAGCCTAAAGGTTTGTTTTTTTTTTTTCCTATCCTGACTTTCT  400

seq1  AATGGTGATGAGAGTGGGCCTGGGGTCTTCCACTTATCCTATGTAGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGATGAGAGTGGGCCTGGGGTCTTCCACTTATCCTATGTAGAGTT  450

seq1  TCTGACTCTCTCGGCCCTATATTTGGTGTTCTCTGGATTCCAGGGGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCTCTCGGCCCTATATTTGGTGTTCTCTGGATTCCAGGGGATAG  500

seq1  ACTAAAGAACACCTACCAGAGTAGAGCACCAACTCACCTTACTCTCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAACACCTACCAGAGTAGAGCACCAACTCACCTTACTCTCACTG  550

seq1  GTGATGAGCTCATAAGACTTTACATCTGAGCCTGGCGACATGAAGTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGCTCATAAGACTTTACATCTGAGCCTGGCGACATGAAGTCCCC  600

seq1  ATAAAGAATGGGTTGGAAGGGACAGACTTTGTTGAAGGCCACCCCAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAATGGGTTGGAAGGGACAGACTTTGTTGAAGGCCACCCCAAACT  650

seq1  CTTCCATCTGGGCTTCAAGGAGTTCATCAAACCAGCTGCGGTCTTCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCTGGGCTTCAAGGAGTTCATCAAACCAGCTGCGGTCTTCCTCA  700

seq1  TTCACCAGGCGGTCACGGAACACACGGCAGTTCTCATGGTACCATAGCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAGGCGGTCACGGAACACACGGCAGTTCTCATGGTACCATAGCCG  750

seq1  CAGCAGCTGCACCTTGTCCTGAGAGTACCCAGTGTCAGGGCCTGTCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGCACCTTGTCCTGAGAGTACCCAGTGTCAGGGCCTGTCTGGG  800

seq1  TCCCTGGCCCGAGATCATCATTTGAAGTGCCAGGGAAGACAGAGTACCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCCCGAGATCATCATTTGAAGTGCCAGGGAAGACAGAGTACCAG  850

seq1  GGGATAGGAGCACGGCTCTCAGGACTAGTCTCCTTCCTTTGACTCAGAGC  900
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  GGGATAGGAGCACGGCTCTCA-GACTAGTCTCTTTCCTTTGACTCAGAGC  899

seq1  TAGAGCTACAGGCAGGAACTGCTGGGAGACGTGCCTCTGCACAACTGAAG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGAGCTACAGGCAGGAACTGCTGGGAGACGTGCCTCTGCAC-ACTGAAG  948

seq1  ACAAAGTGGATGGCAGCGTACCCTGAGCC-TCCCTATCCCCAGCTCCCAG  999
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AC-AAGTGGATGGCAGCGTACCCTGAGCCTTCCCTATCCCCAGCTCCCAG  997

seq1  GGCCCACTAGGCACCAGGACTAGCAGCTGCATA-CTCCAAA-GTCATCAC  1047
      ||||||||| |||| |||||||||||||||||| ||||||| ||||||||
seq2  GGCCCACTA-GCACAAGGACTAGCAGCTGCATACCTCCAAAGGTCATCAC  1046

seq1  TCCACTCCCCCTCTCTTCTAAACCTC-CAAACTCTAAGCCT-GAAAAGG-  1094
      |||||| |||||||| |||||||||| |||||||| || || ||||||| 
seq2  TCCACT-CCCCTCTC-TCTAAACCTCTCAAACTCTTAGGCTGGAAAAGGA  1094

seq1  AGACCTCACTTTCCTTATTCTTCTC  1119
      |||||||||||  ||   |||||||
seq2  AGACCTCACTT--CT--ATCTTCTC  1115

seq1: chr11_5437515_5437917
seq2: B6Ng01-278K01.g_433_840 (reverse)

seq1  GGCTCACAACCATCTGTAACAAGATCTGAC-GCCCTCTTCTGGAGTGTCT  49
      |||||||||||||| |||||| ||||||||  ||||||||||||||||||
seq2  GGCTCACAACCATCCGTAACAGGATCTGACTCCCCTCTTCTGGAGTGTCT  50

seq1  GAAGACAGCTACAGTGTACTTACAT-------ATAAAATAAATCTTAAAA  92
      |||||||||||||||||| ||||||       |||||  ||||||| |||
seq2  GAAGACAGCTACAGTGTATTTACATAAAAATAATAAATAAAATCTTTAAA  100

seq1  AAAAAAAAAAAAAAA----AAAAAAAAAGCTTT------AAG----CT-G  127
      |||||||||||||||    | ||| || | |||      |||    || |
seq2  AAAAAAAAAAAAAAAACAGACAAACAATGTTTTTTTAAAAAGAACACTAG  150

seq1  GGTGTGGTGGTACATGCCTGTGAAACACCAGCTAAGAAAAAATAATAACT  177
      ||  ||| |  | ||| ||         |||| |  |||   |  |  ||
seq2  GGGCTGGAG--AGATGGCT---------CAGC-AGTAAAGGCTGCTTTCT  188

seq1  GAGAG----AGAATGGGCAGTCTCC----CAG--AACATCTAATAATTCA  217
       ||||     || |   || |  ||    |||  | |  |  |||| || 
seq2  CAGAGGACCCGACTTCCCACTAACCATATCAGGCAGCTGCCGATAACTCC  238

seq1  ATGTA--TGAGAT-TG--TCCTTTGACCTTAGGTTGTTTTATCCTAGAGA  262
      |  ||   | ||| ||   | | |||||           | | |  | | 
seq2  AGCTACCGGGGATCTGCAACTTCTGACC-----------TCTGCAGGTGT  277

seq1  GTTATGTTGCTAATTAATAGCTGAAGATCAATAGTGATTAAGCCCTAAAG  312
      |   ||||  ||   |   ||  | |  ||        ||  | ||| | 
seq2  GCCGTGTTTATACGCACATGC--AGGCACA--------TACACACTATAC  317

seq1  AAAATGTGAATTTAAAAAGGTTTCTACAGCCGGG-CGTGGTGGCGAACGC  361
      | |||   || |  ||||       | ||| |||  ||||||||| ||||
seq2  ATAATTAAAAATAGAAAA-------ATAGCTGGGTGGTGGTGGCGCACGC  360

seq1  CTTTAATCCCAGCACTCGGGAGGC--AGGCA----GATTTCTGAGTTC  403
      ||||||||||||||||||||||||  |||||    |||||||||||||
seq2  CTTTAATCCCAGCACTCGGGAGGCAAAGGCAGGTGGATTTCTGAGTTC  408