BAC Information

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BAC

Clone NameB6Ng01-278M18
Chromosome11 (Build37)
Map Location 115,293,553 - 115,419,574
singlet/doubletdoublet
Overlap gene4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2
Upstream geneRpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2
Downstream geneNup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278M18.bB6Ng01-278M18.g
ACCGA078944GA078945
length1,124885
definitionB6Ng01-278M18.b B6Ng01-278M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,293,553 - 115,294,679)(115,418,684 - 115,419,574)
sequence
gaattcatttggagccgcttgttccctcaccttgggggagcccccttatc
cctctgcttttctggaaccacaccaagtggtctggacggatacactgcct
ccatgttcagcaaggggtgcagagggttagggggcaggcagtacaggcat
gggacagacatgggtcatcagtcttgcacctggtaagtgttctcgtcact
gaacattccagaaagctccagctagttctgtacaaaggacactgctgagc
ctcaagcctagacgcagagccaggcattcacggccctcttgtcctggacg
gtgggtcgttgcttccctagctttgcctagtgtggttttaacagtcctgt
gctccaggcaacagagggggctcacagctttccttgaaccactctgcttc
tgaaaacccggctagagagtctggctgatcactgcagatagaggtccctg
tcacatggcgatgtcccaagacctacatgcccctctgttctcaggactgt
caaatggaagtgtctttctgcatttttctttgtcccacccaggtcttttt
cctctggtctccttggtggtgatggacccagcctacctgtcaagtgactc
catttctcagttacttcttggctgtcagaaaggtgtaggaagggagtgat
aagagatgcaaaggaagtaggccaaagggacacccacaccttccagtaag
gccttcgttccatgtctctgggaccatgccagtcactctcccatgccctt
cgtaactggctgatcatgtgtctgaacaaagtctgaagtgttgtgacttt
ttgtcaataaagataagcaacagcactgggcccttggaccgtgtgtgctt
ttgctagctcctggctccagtggtcatcttgtgatgacctggctgctttc
agcaaacaagtctcctgtacctgttctggagtacatcttagagccctgtt
agaactgccagaggcgtgcagggccctctccctcctccctttcatctcat
tggagctgaaaagccccagagtgctgagatagaagcttggacgaattagg
agggctctgaagaagaagttgaaccagtgctattttgtacaggcaaagtc
aggttgagccagttgggaggctca
gaattcaccatgtagagaaagctggccttgaactcacaaagatccagttg
cttcttcctccccagtgctgggattaaaggggacagaccttgaattcctg
atcaccctccacacctagaaagtcctggaattacattatataatccacag
ccaggtagattgcttgacccccatccccatttttgcttagttttagattt
acattattttatgtgtctgagtattttgcctgcatgtgtgatgtctactg
tgtgtgtgcctggggccttcccagaccctaagcaaatgtcagattcccca
aaactggagttatagatggtatgagcactgaaaccaaacccagaccctcc
tctagagctacactctcaaaaacaaatacagaaccagctctccagccttc
ttctgttttgatttttgttgttgttgatgttgtttgtttgtttgtttgtt
tgtttttctgactctgtggagctctggctgtcctggaactcactctgtag
accaggctggccttgaactcagaaatccacctgcctctgcctcccaagtg
ctggaattaaaaaaaacaggcactgccaccttgccagcttgttttctttt
tcttttggtaattctttttaatatattcaagggttttcaagacagggttt
ctctgtataagctctgggctgttcctggaactcactttgtagaccaggct
ggcctccaactctagaaaatcccgactgtctctgcctccccaagtgctgg
gaataaagtggtggtgccacctacgcccggcgccagcttgtttgtttgtt
tttttagattcatttatttattatatgtaagacactgtagctgtctttca
gacactccagagagggcatcatatttcgtacagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115293553_115294679
seq2: B6Ng01-278M18.b_49_1172

seq1  GAATTCATTTGGAGCCGCTTGTTCCCTCACCTTGGGGGAGCCCCCTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGAGCCGCTTGTTCCCTCACCTTGGGGGAGCCCCCTTATC  50

seq1  CCTCTGCTTTTCTGGAACCACACCAAGTGGTCTGGACGGATACACTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTTTCTGGAACCACACCAAGTGGTCTGGACGGATACACTGCCT  100

seq1  CCATGTTCAGCAAGGGGTGCAGAGGGTTAGGGGGCAGGCAGTACAGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCAGCAAGGGGTGCAGAGGGTTAGGGGGCAGGCAGTACAGGCAT  150

seq1  GGGACAGACATGGGTCATCAGTCTTGCACCTGGTAAGTGTTCTCGTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGACATGGGTCATCAGTCTTGCACCTGGTAAGTGTTCTCGTCACT  200

seq1  GAACATTCCAGAAAGCTCCAGCTAGTTCTGTACAAAGGACACTGCTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCCAGAAAGCTCCAGCTAGTTCTGTACAAAGGACACTGCTGAGC  250

seq1  CTCAAGCCTAGACGCAGAGCCAGGCATTCACGGCCCTCTTGTCCTGGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCTAGACGCAGAGCCAGGCATTCACGGCCCTCTTGTCCTGGACG  300

seq1  GTGGGTCGTTGCTTCCCTAGCTTTGCCTAGTGTGGTTTTAACAGTCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCGTTGCTTCCCTAGCTTTGCCTAGTGTGGTTTTAACAGTCCTGT  350

seq1  GCTCCAGGCAACAGAGGGGGCTCACAGCTTTCCTTGAACCACTCTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGCAACAGAGGGGGCTCACAGCTTTCCTTGAACCACTCTGCTTC  400

seq1  TGAAAACCCGGCTAGAGAGTCTGGCTGATCACTGCAGATAGAGGTCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCCGGCTAGAGAGTCTGGCTGATCACTGCAGATAGAGGTCCCTG  450

seq1  TCACATGGCGATGTCCCAAGACCTACATGCCCCTCTGTTCTCAGGACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGGCGATGTCCCAAGACCTACATGCCCCTCTGTTCTCAGGACTGT  500

seq1  CAAATGGAAGTGTCTTTCTGCATTTTTCTTTGTCCCACCCAGGTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGAAGTGTCTTTCTGCATTTTTCTTTGTCCCACCCAGGTCTTTTT  550

seq1  CCTCTGGTCTCCTTGGTGGTGATGGACCCAGCCTACCTGTCAAGTGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTCTCCTTGGTGGTGATGGACCCAGCCTACCTGTCAAGTGACTC  600

seq1  CATTTCTCAGTTACTTCTTGGCTGTCAGAAAGGTGTAGGAAGGGAGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCAGTTACTTCTTGGCTGTCAGAAAGGTGTAGGAAGGGAGTGAT  650

seq1  AAGAGATGCAAAGGAAGTAGGCCAAAGGGACACCCACACCTTCCAGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGCAAAGGAAGTAGGCCAAAGGGACACCCACACCTTCCAGTAAG  700

seq1  GCCTTCGTTCCATGTCTCTGGGACCATGCCAGTCACTCTCCCATGCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGTTCCATGTCTCTGGGACCATGCCAGTCACTCTCCCATGCCCTT  750

seq1  CGTAACTGGCTGATCATGTGTCTGAACAAAGTCTGAAGTGTTGTGACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACTGGCTGATCATGTGTCTGAACAAAGTCTGAAGTGTTGTGACTTT  800

seq1  TTGTCAATAAAGATAAGCAACAGCACTGGG-CCTTGGACCGTGTGTGCTT  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGTCAATAAAGATAAGCAACAGCACTGGGCCCTTGGACCGTGTGTGCTT  850

seq1  TTGCTAGCTCCTGGCTCCAGTGGTCATCTTGTGATGACCTGGCTGCTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGCTCCTGGCTCCAGTGGTCATCTTGTGATGACCTGGCTGCTTTC  900

seq1  AGCAAACAAGTCTCCTGTACCTGTTCTGGAGTACATCTTAGAGCCCTGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAAGTCTCCTGTACCTGTTCTGGAGTACATCTTAGAGCCCTGTT  950

seq1  AGAACTGCCAGAGGCGTGCAGGGCCCTCTCCCTCCTCCCTTTCATCTCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCCAGAGGCGTGCAGGGCCCTCTCCCTCCTCCCTTTCATCTCAT  1000

seq1  TGGAGCTGAAAAGCCCCCAGGAGTGCTGAGGATAG-AGC-TGGACGAATA  1047
      |||||||||||||||||   ||||||||| ||||| ||| ||||||||| 
seq2  TGGAGCTGAAAAGCCCC--AGAGTGCTGA-GATAGAAGCTTGGACGAATT  1047

seq1  AGGGAGGGGCTCCTGAAG-AGAAG-TGACCAGGTGCCTATTTTGTACCAG  1095
      |||   ||||| |||||| ||||| ||| |  ||| |||||||||| |||
seq2  AGG--AGGGCT-CTGAAGAAGAAGTTGAACCAGTG-CTATTTTGTA-CAG  1092

seq1  GCAGAGGCAGGTTGAGCAGGTGGGGAGGCTCA  1127
      ||| || ||||||||||  || ||||||||||
seq2  GCAAAGTCAGGTTGAGCCAGTTGGGAGGCTCA  1124

seq1: chr11_115418684_115419574
seq2: B6Ng01-278M18.g_67_951 (reverse)

seq1  ATCTGTAACGAAATCTGATGCCCTCTTCTGGAGTGTCTG-AAGACAGCTA  49
      |||||| ||||||| |||||||||| ||||||||||||| ||||||||||
seq2  ATCTGT-ACGAAATATGATGCCCTC-TCTGGAGTGTCTGAAAGACAGCTA  48

seq1  CAGTGTACTTACATATAATAAATAAATAAATCTAAAAAAACAAACAAACA  99
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGTGT-CTTACATATAATAAATAAATGAATCTAAAAAAACAAACAAACA  97

seq1  AGCTGGCGCCGGGCGTA-GTGGCA-CACACCTTTAATCCCAGCACTT-GG  146
      ||||||||||||||||| |||||| |||  ||||| ||||||||||| ||
seq2  AGCTGGCGCCGGGCGTAGGTGGCACCACCACTTTATTCCCAGCACTTGGG  147

seq1  GAGGCAGAGACAGTCGG--ATTTCT-GAGTTCGAGGCCAGCCTGGTCTAC  193
      |||||||||||||||||   ||||| ||||| ||||||||||||||||||
seq2  GAGGCAGAGACAGTCGGGATTTTCTAGAGTTGGAGGCCAGCCTGGTCTAC  197

seq1  AAAGTGAGTTCCAGG-ACAG-CCAGAGC-TATACAGAGAAACCCTGTCTT  240
      ||||||||||||||| |||| ||||||| |||||||||||||||||||||
seq2  AAAGTGAGTTCCAGGAACAGCCCAGAGCTTATACAGAGAAACCCTGTCTT  247

seq1  GAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAG  290
      ||||| ||                || | |  ||||| ||  ||||||||
seq2  GAAAACCC-------------TTGAATATATTAAAAAGAATTACCAAAAG  284

seq1  AAAAAGAAAACAAGCTGGCAAGGTGGCAGTGCCTGTTTTTTTTAATTCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAACAAGCTGGCAAGGTGGCAGTGCCTGTTTTTTTTAATTCCA  334

seq1  GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGG  384

seq1  TCTACAGAGTGAGTTCCAGGACAGCCAGAGCTCCACAGAGTCAGAAAAAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACAGCCAGAGCTCCACAGAGTCAGAAAAAC  434

seq1  AAACAAACAAACAAACAAACAACATCAACAACAACAAAAATCAAAACAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAACATCAACAACAACAAAAATCAAAACAGA  484

seq1  AGAAGGCTGGAGAGCTGGTTCTGTATTTGTTTTTGAGAGTGTAGCTCTAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGGAGAGCTGGTTCTGTATTTGTTTTTGAGAGTGTAGCTCTAG  534

seq1  AGGAGGGTCTGGGTTTGGTTTCAGTGCTCATACCATCTATAACTCCAGTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGTCTGGGTTTGGTTTCAGTGCTCATACCATCTATAACTCCAGTT  584

seq1  TTGGGGAATCTGACATTTGCTTAGGGTCTGGGAAGGCCCCAGGCACACAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAATCTGACATTTGCTTAGGGTCTGGGAAGGCCCCAGGCACACAC  634

seq1  ACAGTAGACATCACACATGCAGGCAAAATACTCAGACACATAAAATAATG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGACATCACACATGCAGGCAAAATACTCAGACACATAAAATAATG  684

seq1  TAAATCTAAAACTAAGCAAAAATGGGGATGGGGGTCAAGCAATCTACCTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAAAACTAAGCAAAAATGGGGATGGGGGTCAAGCAATCTACCTG  734

seq1  GCTGTGGATTATATAATGTAATTCCAGGACTTTCTAGGTGTGGAGGGTGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGATTATATAATGTAATTCCAGGACTTTCTAGGTGTGGAGGGTGA  784

seq1  TCAGGAATTCAAGGTCTGTCCCCTTTAATCCCAGCACTGGGGAGGAAGAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATTCAAGGTCTGTCCCCTTTAATCCCAGCACTGGGGAGGAAGAA  834

seq1  GCAACTGGATCTTTGTGAGTTCAAGGCCAGCTTTCTCTACATGGTGAATT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGGATCTTTGTGAGTTCAAGGCCAGCTTTCTCTACATGGTGAATT  884

seq1  C  891
      |
seq2  C  885