BAC Information

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BAC

Clone NameB6Ng01-278M23
Chromosome11 (Build37)
Map Location 106,729,231 - 106,729,764
singlet/doubletsinglet
Overlap geneSmurf2
Upstream geneTanc2, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45
Downstream geneLOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278M23.bB6Ng01-278M23.g
ACCGA078954GA078955
length428527
definitionB6Ng01-278M23.b B6Ng01-278M23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
catctgtagaccaggcttgctttgaactcaaagatctaccagcctctgcc
tccacagtgctgggattgaaggagtgttgccccggctgtctggccctagt
gattaaaataaaaataaaaaatgtttagttttatttatatgtttggagtt
gaggtacatttgccacaggcatgcaggttcccccaggcaccagaagggag
catcggtttctggagctggagttacagttggtagttttgaactaccccat
ggtgatgctgatgctaatgctggtgctgatgctggtggtggtgctgatgc
ctatgctctgtgctgctaccaaggaccaggttgatgtccctgatcttgag
agctgctccctgctgctgtgggcaaggaagcctctttttttttgtatgta
tgtatgtatgtatgtatgtatgtatgta
acggttcctatggccatgttgtgcttagcagatagcattttggaggccct
ctccccatcctgtgccttacacatttatttcacttctcttcctcaatgtt
tcttgaatcctaaatggatggtgcaaatatcttgtctagaggtcaagact
ccaccatcctttattctcagtatcttgttctgccatgggcctttgcattt
aactcttaactccataaggtgagctgcctttatctggtctaagacaagcc
ccaaatgtaaatcacttctgaatagtgtaaattattgggcactcaagcat
cctctctgattcacctttagaatcacattcttaaaatgtttcatttctga
ataaaaaatttgatttaagtatttagtatgtgctagggagtagagagggg
gaggaggagagagcgagctacctttgccagatggttgacctaccaaacca
ttttgccagcccaaaatgtttcaatttttgtgtccaataataaatatagg
ccaggaatttttactattgttttagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106729231_106729764
seq2: B6Ng01-278M23.g_65_597

seq1  GAATTCACGGTTCCTATGGCCATGTTGTGCTTAGCAGATAGCATTTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGTTCCTATGGCCATGTTGTGCTTAGCAGATAGCATTTTGGA  50

seq1  GGCCCTCTCCCCATCCTGTGCCTTACACATTTATTTCACTTCTCTTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCTCCCCATCCTGTGCCTTACACATTTATTTCACTTCTCTTCCTC  100

seq1  AATGTTTCTTGAATCCTAAATGGATGGTGCAAATATCTTGTCTAGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCTTGAATCCTAAATGGATGGTGCAAATATCTTGTCTAGAGGTC  150

seq1  AAGACTCCACCATCCTTTATTCTCAGTATCTTGTTCTGCCATGGGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCACCATCCTTTATTCTCAGTATCTTGTTCTGCCATGGGCCTTT  200

seq1  GCATTTAACTCTTAACTCCATAAGGTGAGCTGCCTTTATCTGGTCTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAACTCTTAACTCCATAAGGTGAGCTGCCTTTATCTGGTCTAAGA  250

seq1  CAAGCCCCAAATGTAAATCACTTCTGAATAGTGTAAATTATTGGGCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCAAATGTAAATCACTTCTGAATAGTGTAAATTATTGGGCACTC  300

seq1  AAGCATCCTCTCTGATTCACCTTTAGAATCACATTCTTAAAATGTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCTCTCTGATTCACCTTTAGAATCACATTCTTAAAATGTTTCAT  350

seq1  TTCTGAATAAAAAATTTGATTTAAGTATTTAGTATGTGCTAGGGAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATAAAAAATTTGATTTAAGTATTTAGTATGTGCTAGGGAGTAGA  400

seq1  GAGGGGGAGGAGGAGAGAGCGAGCTACCTTTGCCAGATGGTTGACCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGAGGAGGAGAGAGCGAGCTACCTTTGCCAGATGGTTGACCTACC  450

seq1  AAACCATTTTGCCAGCCCAAAATGTTTCAATTTTTGTGTCCAATAAATAA  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACCATTTTGCCAGCCCAAAATGTTTCAATTTTTGTGTCCAAT-AATAA  499

seq1  ATATAGGCCAGGAATTTTTACTAGTGTTTTAGAT  534
      ||||||||||||||||||||||| ||||||||||
seq2  ATATAGGCCAGGAATTTTTACTATTGTTTTAGAT  533