BAC Information

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BAC

Clone NameB6Ng01-279F12
Chromosome11 (Build37)
Map Location 75,992,642 - 76,186,654
singlet/doubletdoublet
Overlap geneVps53, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn
Upstream geneDph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, LOC668634
Downstream geneTimm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279F12.bB6Ng01-279F12.g
ACCGA079348GA079349
length1,0991,093
definitionB6Ng01-279F12.b B6Ng01-279F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,185,550 - 76,186,654)(75,992,642 - 75,993,745)
sequence
gaattcctcttcctggtctccctctttctctctttctctccctctctagt
taaaagatttcctgtggtgtgattgaggtgtggactgagggccttagatt
tgtaaggtgattggcctacctcccgagttaaaaggcttttttttttagca
atctctatttatttacttcttttcttttcttttcttttcttttcttttct
tttcttttcttttctttcttttttttcaaaaagaaccgactcctgaagcc
tgctgattgttttgactgcaagcaaggcagtcagatacttggggtagatt
tcttctggcccttgagactcttggcgtccccaccaccaccacagaagctg
caggccaaatggccgtgatcacagggtatgtggcctggttgccagagcag
aaggacagattatgtctgcctgtagagaaccctggtagccataaccaggc
taagtcccgagtccagaggctggccagggagttggaggtcctgctgggca
gctctgctccaaattcgttgagggaagtgggatcatggccaaaggaggcc
agtggaggaaagatgaggctgccccccccccccccaacacacacacattt
gctgtttctctcagcgtcaaggtgtggttttaacactgctgtggggaagg
aatatagctctcaaccacagagccctgcaggaggtagggagccaggttgg
gactctgctctgtttaccttaagtgcttgttccaaaggaaatatcaattg
ttgatttccaccctgactgagagtcagtgcactctgaggagctgttaaaa
tatgtgttcccaggctgctggctcactgttacttgcccagcttagagcac
agtcagtactctgagttgctggcacaagtagaacaaagccgttagtggct
gatgatgatgcttaggtacagtcttctagccagtctaatgcagtgtagtc
tcatctttgcacccaggaggccccttcacatgcgggagcagctcagccat
cctggtgatgacctgtgtaatgtgtttctacagctctggtgccttctgat
gtagaccaggcagccatcatgaaggagtggctgccgagtactatataaa
gaattctctagtcacggggctccctctaggtttatcctgtcaaagaggac
agctcggcccaaactcagcagggcgtaacaacctcggaaacacagagcct
agagaagacgtgttcggtccccaggctgaaaaacccatccccacctttac
caccatccagacttccgctcagcataagaaccgccacctttccagcctag
caggggagattcgaccctggcctagagctgccccttccaccgcagcttcc
tcccgagggggtggagcgctcacctgctcgatggcgagttgcacctctgg
cgtgagctgcagcacagcctccagctcctccacaaactccagttcctcct
cctccatcatcccgccgctcagcccccgacgccctctccaatcctgctcg
cgacctgtctgtcaccaggaccccagaagagcaagcctccaggtacgggg
ctcgagggagccgctacttactcggctagcctggcacttccggagaactg
ggcacttccgggaaccgggggactctgggatagcggaggactgacttccg
caggcatggctgtcaagtccctggaaaatctccagacaacccttaacctc
aagttccctgttcgcacgcggcgggttcttaagattgaaagccctctctt
cttcgcccagggcgcatcccccaccagcgccgtagtgtcgcccgggcgcc
ccagagagcggtagccacggcagtgtcccaatggatgggcaataagcccc
gctggccatgaagccaacgtgcaacccgctcgctggatccccttggtcta
gggcagtctgtgtccccctgccatcgggagtgaaatgaccccagctggta
agtggcagtgttgccaaagacatttgaggtttgggagagcttctgctcct
tagataaggatctactgggcagaattgtctgaagcctcctcgctagggtg
ggggagtagagaaaagcgaccaacgctgggagtgtttgggtttttgagac
cgaatgtccggctgtacatctattacaccctggatacccttatgatctgg
acagtattcccatctgcctgcctacactacgtagatggggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_76185550_76186654
seq2: B6Ng01-279F12.b_41_1139 (reverse)

seq1  TTTATATAGTTACTC-GCAGCAACTCCTCATTGAT-GCTGCCCTGTTCTA  48
      ||||||||| ||||| ||||| ||||||   |||| |||| |||| ||||
seq2  TTTATATAG-TACTCGGCAGCCACTCCTTCATGATGGCTG-CCTGGTCTA  48

seq1  CATCAGGAAGCACCAGAGCCTGTTAGAAACACATTAACACAGGTCATCAC  98
      |||||| | ||||||||| ||| |||||||||||| ||||||||||||||
seq2  CATCAGAAGGCACCAGAG-CTG-TAGAAACACATT-ACACAGGTCATCAC  95

seq1  CAGGATGGCTGAGCTGCCTTCCCGCATGTGAAGGGGCCTCCTGGGTGCAA  148
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  CAGGATGGCTGAGCTGC--TCCCGCATGTGAAGGGGCCTCCTGGGTGCAA  143

seq1  AGATGAGACTACACTGCATTAGACTGGCTAAGAGACTGTACCTAAGCATC  198
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  AGATGAGACTACACTGCATTAGACTGGCTAGAAGACTGTACCTAAGCATC  193

seq1  ATCATCAGCCACTAACGGCTTTGTTCTACTTGTGCCAGCAACTCAGAGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGCCACTAACGGCTTTGTTCTACTTGTGCCAGCAACTCAGAGTA  243

seq1  CTGACTGTGCTCTAAGCTGGGCAAGTAACAGTGAGCCAGCAGCCTGGGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTGCTCTAAGCTGGGCAAGTAACAGTGAGCCAGCAGCCTGGGAA  293

seq1  CACATATTTTAACAGCTCCTCAGAGTGCACTGACTCTCAGTCAGGGTGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTTTAACAGCTCCTCAGAGTGCACTGACTCTCAGTCAGGGTGGA  343

seq1  AATCAACAATTGATATTTCCTTTGGAACAAGCACTTAAGGTAAACAGAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACAATTGATATTTCCTTTGGAACAAGCACTTAAGGTAAACAGAGC  393

seq1  AGAGTCCCAACCTGGCTCCCTACCTCCTGCAGGGCTCTGTGGTTGAGAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCAACCTGGCTCCCTACCTCCTGCAGGGCTCTGTGGTTGAGAGC  443

seq1  TATATTCCTTCCCCACAGCAGTGTTAAAACCACACCTTGACGCTGAGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCTTCCCCACAGCAGTGTTAAAACCACACCTTGACGCTGAGAGA  493

seq1  AACAGCAAATGTGTGTGTGTTGGGGGGGGGGGGGGGCAGCCTCATCTTTC  548
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACAGCAAATGTGTGTGTGTT-GGGGGGGGGGGGGGCAGCCTCATCTTTC  542

seq1  CTCCACTGGCCTCCTTTGGCCATGATCCCACTTCCCTCAACGAATTTGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGGCCTCCTTTGGCCATGATCCCACTTCCCTCAACGAATTTGGA  592

seq1  GCAGAGCTGCCCAGCAGGACCTCCAACTCCCTGGCCAGCCTCTGGACTCG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTGCCCAGCAGGACCTCCAACTCCCTGGCCAGCCTCTGGACTCG  642

seq1  GGACTTAGCCTGGTTATGGCTACCAGGGTTCTCTACAGGCAGACATAATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAGCCTGGTTATGGCTACCAGGGTTCTCTACAGGCAGACATAATC  692

seq1  TGTCCTTCTGCTCTGGCAACCAGGCCACATACCCTGTGATCACGGCCATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCTGCTCTGGCAACCAGGCCACATACCCTGTGATCACGGCCATT  742

seq1  TGGCCTGCAGCTTCTGTGGTGGTGGTGGGGACGCCAAGAGTCTCAAGGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCAGCTTCTGTGGTGGTGGTGGGGACGCCAAGAGTCTCAAGGGC  792

seq1  CAGAAGAAATCTACCCCAAGTATCTGACTGCCTTGCTTGCAGTCAAAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAATCTACCCCAAGTATCTGACTGCCTTGCTTGCAGTCAAAACA  842

seq1  ATCAGCAGGCTTCAGGAGTCGGTTCTTTTTGAAAAAAAAGAAAGAAAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGGCTTCAGGAGTCGGTTCTTTTTGAAAAAAAAGAAAGAAAAGA  892

seq1  AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAGTAAATAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAGTAAATAAA  942

seq1  TAGAGATTGCTAAAAAAAAAAGCCTTTTAACTCGGGAGGTAGGCCAATCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTGCTAAAAAAAAAAGCCTTTTAACTCGGGAGGTAGGCCAATCA  992

seq1  CCTTACAAATCTAAGGCCCTCAGTCCACACCTCAATCACACCACAGGAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAAATCTAAGGCCCTCAGTCCACACCTCAATCACACCACAGGAAA  1042

seq1  TCTTTTAACTAGAGAGGGAGAGAAAGAGAGAAAGAGGGAGACCAGGAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAACTAGAGAGGGAGAGAAAGAGAGAAAGAGGGAGACCAGGAAGA  1092

seq1  GGAATTC  1105
      |||||||
seq2  GGAATTC  1099

seq1: chr11_75992642_75993745
seq2: B6Ng01-279F12.g_62_1154

seq1  GAATTCTCTAGTCACGGGGCTCCCTCTAGGTTTATCCTGTCAAAGAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGTCACGGGGCTCCCTCTAGGTTTATCCTGTCAAAGAGGAC  50

seq1  AGCTCGGCCCAAACTCAGCAGGGCGTAACAACCTCGGAAACACAGAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGGCCCAAACTCAGCAGGGCGTAACAACCTCGGAAACACAGAGCCT  100

seq1  AGAGAAGACGTGTTCGGTCCCCAGGCTGAAAAACCCATCCCCACCTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGACGTGTTCGGTCCCCAGGCTGAAAAACCCATCCCCACCTTTAC  150

seq1  CACCATCCAGACTTCCGCTCAGCATAAGAACCGCCACCTTTCCAGCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCAGACTTCCGCTCAGCATAAGAACCGCCACCTTTCCAGCCTAG  200

seq1  CAGGGGAGATTCGACCCTGGCCTAGAGCTGCCCCTTCCACCGCAGCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGATTCGACCCTGGCCTAGAGCTGCCCCTTCCACCGCAGCTTCC  250

seq1  TCCCGAGGGGGTGGAGCGCTCACCTGCTCGATGGCGAGTTGCACCTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGGGGGTGGAGCGCTCACCTGCTCGATGGCGAGTTGCACCTCTGG  300

seq1  CGTGAGCTGCAGCACAGCCTCCAGCTCCTCCACAAACTCCAGTTCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGCTGCAGCACAGCCTCCAGCTCCTCCACAAACTCCAGTTCCTCCT  350

seq1  CCTCCATCATCCCGCCGCTCAGCCCCCGACGCCCTCTCCAATCCTGCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCATCCCGCCGCTCAGCCCCCGACGCCCTCTCCAATCCTGCTCG  400

seq1  CGACCTGTCTGTCACCAGGACCCCAGAAGAGCAAGCCTCCAGGTACGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTGTCTGTCACCAGGACCCCAGAAGAGCAAGCCTCCAGGTACGGGG  450

seq1  CTCGAGGGAGCCGCTACTTACTCGGCTAGCCTGGCACTTCCGGAGAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGGAGCCGCTACTTACTCGGCTAGCCTGGCACTTCCGGAGAACTG  500

seq1  GGCACTTCCGGGAACCGGGGGACTCTGGGATAGCGGAGGACTGACTTCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTCCGGGAACCGGGGGACTCTGGGATAGCGGAGGACTGACTTCCG  550

seq1  CAGGCATGGCTGTCAAGTCCCTGGAAAATCTCCAGACAACCCTTAACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGGCTGTCAAGTCCCTGGAAAATCTCCAGACAACCCTTAACCTC  600

seq1  AAGTTCCCTGTTCGCACGCGGCGGGTTCTTAAGATTGAAAGCCCTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCTGTTCGCACGCGGCGGGTTCTTAAGATTGAAAGCCCTCTCTT  650

seq1  CTTCGCCCAGGGCGCATCCCCCACCAGCGCCGTAGTGTCGCCCGGGCGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCCCAGGGCGCATCCCCCACCAGCGCCGTAGTGTCGCCCGGGCGCC  700

seq1  CCAGAGAGCGGTAGCCACGGCAGTGTCCCAATGGATGGGCAATAAGCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGCGGTAGCCACGGCAGTGTCCCAATGGATGGGCAATAAGCCCC  750

seq1  GCTGGCCATGAAGCCAACGTGCAACCCGCTCGCTGGATCCCCTTGGTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCATGAAGCCAACGTGCAACCCGCTCGCTGGATCCCCTTGGTCTA  800

seq1  GGGCAGTCTGTGTCCCCCTGCCATCGGGAGTGAAATGACCCCAGCTGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCTGTGTCCCCCTGCCATCGGGAGTGAAATGACCCCAGCTGGTA  850

seq1  AGTGGCAGTGTTGCCAAAGACATTTGAGGTTTGGGAGAGCTTCTGCTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAGTGTTGCCAAAGACATTTGAGGTTTGGGAGAGCTTCTGCTCCT  900

seq1  TAGATAAGGATCTACTGGGCAGAATTGTCTGAAGCCTCCTCGCTAGGGT-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGATAAGGATCTACTGGGCAGAATTGTCTGAAGCCTCCTCGCTAGGGTG  950

seq1  GGGGAGTAAGGAGAAAAGCGACCCAACGCTGGGAAGTGTTT-GGTTTTTG  998
      ||||||||  ||||||||||| ||||||||||| ||||||| ||||||||
seq2  GGGGAGTA--GAGAAAAGCGA-CCAACGCTGGG-AGTGTTTGGGTTTTTG  996

seq1  AGACCGAATGTCCGGGCTGTACATCCTTATTTACACCCTTGATAACCTTA  1048
      ||||||||||||| |||||||||||  || ||||||||| |||| |||||
seq2  AGACCGAATGTCC-GGCTGTACATC--TA-TTACACCCTGGATACCCTTA  1042

seq1  TGATCTTGAACAAAGTATTCCCATCTGCCCTGCTTACACTACGTTAGATG  1098
      |||||| |   | |||||||||||||| ||||| ||||||||| ||||||
seq2  TGATCTGG---ACAGTATTCCCATCTG-CCTGCCTACACTACG-TAGATG  1087

seq1  GGGTGA  1104
      ||||||
seq2  GGGTGA  1093