BAC Information

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BAC

Clone NameB6Ng01-279F14
Chromosome11 (Build37)
Map Location 56,589,951 - 56,740,047
singlet/doubletdoublet
Overlap genenone
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279F14.bB6Ng01-279F14.g
ACCGA079352GA079353
length1,137785
definitionB6Ng01-279F14.b B6Ng01-279F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,589,951 - 56,590,928)(56,739,264 - 56,740,047)
sequence
gaattcatttgcttatctctacttgcttattcatgtattctcaaacatta
ggttggctccaaattttgactcttataaataatcccatagtgaacatgaa
aaggcaaaaaagtctcttcaagacactcagaagtatgtagctgagcaaat
actacatttagttctatcttcaagttttggagtgccccccttaccatttt
ccataatggcaccactcattcaagctcccaccaaccatacacaagcaatt
cctcctctcttcattttgaatttttaatagtaaactttcttggaatccta
gcaggtgtgctgatggtccaatctgtattttcataaggattagtggcatt
cagtgcttttctgtatacctgttgactactttcctattttctttgtagaa
atgtttgtcagaacctttgtccgttttttaaatgggggttatcattttcc
ttccacagtcgagcctactcatgcatactgagtagaaacttcttaccagc
tataagactggcaaattcttcctatatgttgttgctttggagaaattcca
tgatcaaaagaacctttgtggggaaagagtttatttggattaaacttcta
ggtcacagtccatcactgagggaagtcggggcaggaacccaaggcaggaa
cctaaaggcaggcttgtttgctgttccatgcagcattaaccctgagcaga
gaacacactaacagacaggaaagtacagagccacggaggcagcctgcctg
gagctcactctcagaaccatgctcaaccaactcttatacagccaagggct
acctgttatgctcagtcagctgtcttacacagccagggctgcctgccctg
gggacagctggcttctgtcatgattccatacaacctgaagattgttttgt
tctgattctgagcaaaatgttgatggaattctgacagggattatatagtg
actctttgcttttgttttattgttctttttctgttttgtggggatagatg
agtactgatatttttaagtcttccagcattgagacatattttgtgagaac
aggccctcaatgggtgactcagtcatactggaatttcactgtgtaagtca
gttgctgccaaacttgccaattctctcctgcctcagc

gaattcactaataccctcccagggcctgtcaagagagacttctggctcag
tacttttgctgagcaaattggaaggccatggagtgggtgctgtgctccag
caaaggactcacctcattgtcaaaaagcataaaggaaagaggaaggatct
gagatcccataattccctgaaggccatcctacttggccacgagaacccct
ccacccccaggaggcagagggaaggccaagctttacccagactttctgta
cattcaacattcaaacagtcgtctctctctttccacagacaacataacct
cccccaggataacaagtctgtattaactcagctgttacaagaagctcagg
cagactctatatgtaatacactgaaagggacttaagggaccatttatttc
cagggcttcatcttagagtccggcaatcagatttgttaagtaactcagcc
aaagtcacacatgagcacaacacagcagtaggtcatacagttcatgccca
gaaacaaactattaagccactgtgaaagatgtcaagtcttgaaagctggt
ctgaaatggaagaattcatagaacctgggatggccatgaggagctaggct
ggatccagactttgaaatttggtaccagtgactaagggcagctggagatg
aaggtcgggtgtacccttggaatgattgcagctcttctgcagctttcaca
caagggtaaggaaacaagcaacacctacggcctcttaaaatggcttgctg
ccaggcttgctgaggaagtgatgggggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_56589951_56590928
seq2: B6Ng01-279F14.b_213_1186

seq1  CTATCTTCAAGTTTTGGAGTGCCCCCCTTACCATTTTCCATAATGGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTCAAGTTTTGGAGTGCCCCCCTTACCATTTTCCATAATGGCACC  50

seq1  ACTCATTCAAGCTCCCACCAACCATACACAAGCAATTCCTCCTCTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCAAGCTCCCACCAACCATACACAAGCAATTCCTCCTCTCTTCA  100

seq1  TTTTGAATTTTTAATAGTAAACTTTCTTGGAATCCTAGCAGGTGTGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTTTTAATAGTAAACTTTCTTGGAATCCTAGCAGGTGTGCTGA  150

seq1  TGGTCCAATCTGTATTTTCATAAGGATTAGTGGCATTCAGTGCTTTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAATCTGTATTTTCATAAGGATTAGTGGCATTCAGTGCTTTTCTG  200

seq1  TATACCTGTTGACTACTTTCCTATTTTCTTTGTAGAAATGTTTGTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTGTTGACTACTTTCCTATTTTCTTTGTAGAAATGTTTGTCAGAA  250

seq1  CCTTTGTCCGTTTTTTAAATGGGGGTTATCATTTTCCTTCCACAGTCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCCGTTTTTTAAATGGGGGTTATCATTTTCCTTCCACAGTCGAG  300

seq1  CCTACTCATGCATACTGAGTAGAAACTTCTTACCAGCTATAAGACTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCATGCATACTGAGTAGAAACTTCTTACCAGCTATAAGACTGGCA  350

seq1  AATTCTTCCTATATGTTGTTGCTTTGGAGAAATTCCATGATCAAAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCCTATATGTTGTTGCTTTGGAGAAATTCCATGATCAAAAGAAC  400

seq1  CTTTGTGGGGAAAGAGTTTATTTGGATTAAACTTCTAGGTCACAGTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGGGAAAGAGTTTATTTGGATTAAACTTCTAGGTCACAGTCCAT  450

seq1  CACTGAGGGAAGTCGGGGCAGGAACCCAAGGCAGGAACCTAAAGGCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGGAAGTCGGGGCAGGAACCCAAGGCAGGAACCTAAAGGCAGGC  500

seq1  TTGTTTGCTGTTCCATGCAGCATTAACCCTGAGCAGAGAACACACTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTGTTCCATGCAGCATTAACCCTGAGCAGAGAACACACTAACA  550

seq1  GACAGGAAAGTACAGAGCCACGGAGGCAGCCTGCCTGGAGCTCACTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAAGTACAGAGCCACGGAGGCAGCCTGCCTGGAGCTCACTCTCA  600

seq1  GAACCATGCTCAACCAACTCTTATACAGCCAAGGGCTACCTGTTATGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATGCTCAACCAACTCTTATACAGCCAAGGGCTACCTGTTATGCTC  650

seq1  AGTCAGCTGTCTTACACAGCCAGGGCTGCCTGCCCTGGGGACAGCTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCTGTCTTACACAGCCAGGGCTGCCTGCCCTGGGGACAGCTGGCT  700

seq1  TCTGTCATGATTCCATACAACCTGAAGATTGTTTTGTTCTGATTCTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATGATTCCATACAACCTGAAGATTGTTTTGTTCTGATTCTGAGC  750

seq1  AAAATGTTGATGGAATTCTGACAGGGATTATATAGTGACTCTTTGCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTGATGGAATTCTGACAGGGATTATATAGTGACTCTTTGCTTTT  800

seq1  GTTTTTATTGTTCTTTTTCTGTTTTGTTGGGATAAGATGAGTAACTGAAT  850
      | ||||||||||||||||||||||||| ||||| |||||||| |||| ||
seq2  G-TTTTATTGTTCTTTTTCTGTTTTGTGGGGAT-AGATGAGT-ACTG-AT  846

seq1  ATTTTTAAGTCTTCCAAGCCATTGAGACAATATTTTGTGAG-ACAGGCCC  899
      ||||||||||||||||   ||||||||| |||||||||||| ||||||||
seq2  ATTTTTAAGTCTTCCA--GCATTGAGAC-ATATTTTGTGAGAACAGGCCC  893

seq1  TCAATGGGTGACTCAGTCCATACTGGAA-TTCACTGTGTAGTCCAGGTTG  948
      ||||||||||||||||| |||||||||| |||||||||||   |||  | 
seq2  TCAATGGGTGACTCAGT-CATACTGGAATTTCACTGTGTAAGTCAG--TT  940

seq1  GCTG-CAAACTTG-CAAT--TCTCCTGCCTCAGC  978
      |||| |||||||| ||||  ||||||||||||||
seq2  GCTGCCAAACTTGCCAATTCTCTCCTGCCTCAGC  974


seq1: chr11_56739264_56740047
seq2: B6Ng01-279F14.g_64_848 (reverse)

seq1  CCCCCA-CCCCCCATCACTTCCTCAGCAAGCCTGGCAGCAAGCCATTTTA  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCCCATCACTTCCTCAGCAAGCCTGGCAGCAAGCCATTTTA  50

seq1  AGAGGCCGTAGGTGTTGCTTGTTTCCTTACCCTTGTGTGAAAGCTGCAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCGTAGGTGTTGCTTGTTTCCTTACCCTTGTGTGAAAGCTGCAGA  100

seq1  AGAGCTGCAATCATTCCAAGGGTACACCCGACCTTCATCTCCAGCTGCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCAATCATTCCAAGGGTACACCCGACCTTCATCTCCAGCTGCCC  150

seq1  TTAGTCACTGGTACCAAATTTCAAAGTCTGGATCCAGCCTAGCTCCTCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACTGGTACCAAATTTCAAAGTCTGGATCCAGCCTAGCTCCTCAT  200

seq1  GGCCATCCCAGGTTCTATGAATTCTTCCATTTCAGACCAGCTTTCAAGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCCCAGGTTCTATGAATTCTTCCATTTCAGACCAGCTTTCAAGAC  250

seq1  TTGACATCTTTCACAGTGGCTTAATAGTTTGTTTCTGGGCATGAACTGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCTTTCACAGTGGCTTAATAGTTTGTTTCTGGGCATGAACTGTA  300

seq1  TGACCTACTGCTGTGTTGTGCTCATGTGTGACTTTGGCTGAGTTACTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTACTGCTGTGTTGTGCTCATGTGTGACTTTGGCTGAGTTACTTAA  350

seq1  CAAATCTGATTGCCGGACTCTAAGATGAAGCCCTGGAAATAAATGGTCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGATTGCCGGACTCTAAGATGAAGCCCTGGAAATAAATGGTCCC  400

seq1  TTAAGTCCCTTTCAGTGTATTACATATAGAGTCTGCCTGAGCTTCTTGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCCTTTCAGTGTATTACATATAGAGTCTGCCTGAGCTTCTTGTA  450

seq1  ACAGCTGAGTTAATACAGACTTGTTATCCTGGGGGAGGTTATGTTGTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGAGTTAATACAGACTTGTTATCCTGGGGGAGGTTATGTTGTCTG  500

seq1  TGGAAAGAGAGAGACGACTGTTTGAATGTTGAATGTACAGAAAGTCTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAGAGAGACGACTGTTTGAATGTTGAATGTACAGAAAGTCTGGG  550

seq1  TAAAGCTTGGCCTTCCCTCTGCCTCCTGGGGGTGGAGGGGTTCTCGTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTGGCCTTCCCTCTGCCTCCTGGGGGTGGAGGGGTTCTCGTGGC  600

seq1  CAAGTAGGATGGCCTTCAGGGAATTATGGGATCTCAGATCCTTCCTCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGATGGCCTTCAGGGAATTATGGGATCTCAGATCCTTCCTCTTT  650

seq1  CCTTTATGCTTTTTGACAATGAGGTGAGTCCTTTGCTGGAGCACAGCACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGCTTTTTGACAATGAGGTGAGTCCTTTGCTGGAGCACAGCACC  700

seq1  CACTCCATGGCCTTCCAATTTGCTCAGCAAAAGTACTGAGCCAGAAGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATGGCCTTCCAATTTGCTCAGCAAAAGTACTGAGCCAGAAGTCT  750

seq1  CTCTTGACAGGCCCTGGGAGGGTATTAGTGAATTC  784
      |||||||||||||||||||||||||||||||||||
seq2  CTCTTGACAGGCCCTGGGAGGGTATTAGTGAATTC  785


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