BAC Information

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BAC

Clone NameB6Ng01-279K07
Chromosome11 (Build37)
Map Location 72,936,406 - 73,148,280
singlet/doubletdoublet
Overlap geneItgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22
Upstream genePitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik
Downstream geneOlfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279K07.bB6Ng01-279K07.g
ACCGA079573GA079574
length1,1281,069
definitionB6Ng01-279K07.b B6Ng01-279K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,147,144 - 73,148,280)(72,936,406 - 72,937,476)
sequence
gaattcatcaaagtctatgaaagcacactgaaaaaattttaaatatgagt
attgctagacataaaattatttaatattttattcatatgattccattaat
aattttaaagtttgtttctaaaatttaaacatacataaccagaatgtgcc
aaatatatttcagaatatctccctatcggtgatttctcccagaaggaagt
aaaaagacagtgaatattgagtcagtgagcaagatggcttagtgggaagc
cttgccatcaagcttaatgacctgagtctcatctctagaacacacatgca
cacacaaataaataagaaaagtaaagtctcccagcactcaccactatagc
tatttggttcccagatgacaagattttagtggtctcacttaaaatgtaac
acatattagaagcttcctgactctaaaacttcattaaattttacaaagag
ttacaaaagacagtcagtctctgagaagtagagagagagagagtatgtaa
agtcccagcaatggcaactatcaaaatgtgctggtttaatctataaggaa
gcatactagatgaaaggatcttagaccatttgggctatcacaaaatatct
tctatttgtaatttacaaatagaaattttgatagtgctgaagactaaaac
atatttgattgagatgacaacaaactaggtgtttggtgaaagcttgttct
tgctccagagagagcccctctaagtgtcctcacaagacagaagcagcata
cttcatctctcctttataaggctactagtcctttcgtaggggtggaatcc
tcacaactctaagtacctcctaaaggtttatctactactcaatggttaag
tttcaacttaagaattttcagatcccagaaaatactgagggagacacaga
gaaaagacaggcaaaagaaagccacgactatacccaagcaccagaatttc
tgggcttattcttttctactatctacttttttccactttttttaaacctc
tatatacactttttctgtttctgagtactctaaccttccatcttctaaaa
aatatatattcacaggtattctatgttcctgcaagaaaaaatagtctttt
tgcaatgtagtcgtacttattagaacaa
gaattcaaggcaaggttgttctacattccaagttctaggtgagagctata
tggtgagacacaaaaaggatcctagagtctggcctcaaggaagtgctcgc
atggggaccatgttcagctcagcacacagcctcagcaggcagggcctctc
tgcctggaccttgcccttcccaggctcatcagaaggtctggtcttcaacc
ccaggccttagagagatgttcctcaactttacggtggatgtggatgtgac
caagcaaaggcagaggctgcagtgtgaggactcgagcggttgtcagagct
gcctcaggaagtggaacggagggtcctttctgtgtgaacacttctggctc
atctccacagaggaggtaagtagagaatttagacaacagcccagagaatg
tgtctgcagtgcaggagccttcccacacagacaaagcaaccataacatat
caagaaccacaaagtgacaccagaaatataatcctactggaaatccaaac
taaagaagcttgggctatgggtgtgtctctgtgatgcagagtgagctctg
catgctctgcatgtgtgaggcactgcagttagtgccctgggaaggaagga
gcaaaggaaggagaaagcagggcagagggaaagtatctaccagaggtgga
tctcagacaccaccactgagcttcctgggagccggacggataaagcaggg
aatggcttaactatgttgtctaatcttacctgatagtaacagtgggctag
agccccttgagtagatccacatcagaaaattagaatgaaaaggcagaact
agaaagacagagttactgggcagtggtgacacacgccttttaatcccagc
acttggggaggcagaaggcaggcggatctcttgagttcaaggccagcctg
gtctacagaagtgagttccggacagcaagggctacacagagaaactctct
tcaaaaaaacaaaaacaaacaaacaaaagaacagtatttttgaaaggtta
tttaaagagctagagaaagtacccagagctgaaagagtttgccaaccgtt
aaagtgggacaacaatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73147144_73148280
seq2: B6Ng01-279K07.b_43_1170 (reverse)

seq1  TTGTTCTAATAAAGTAGGAACCTACATTGC--AAAGACTATTTTTCTTTC  48
      |||||||||| ||||| ||  |||||||||  |||||||||||||  || 
seq2  TTGTTCTAAT-AAGTACGA--CTACATTGCAAAAAGACTATTTTTTCTTG  47

seq1  TCAGAACATAGAATA-CTGTG-ATATATATTTTTTAGGAAAGGATGGAAG  96
         |||||||||||| ||||| |||||||||||||||   | ||||||| 
seq2  CAGGAACATAGAATACCTGTGAATATATATTTTTTAG---AAGATGGAA-  93

seq1  GGTTAGAGTTACCTCAGAAACAGGAAAAAGTGTATATAGA-GTTTAAAAA  145
      |||||||||   |||||||||| ||||||||||||||||| |||||||||
seq2  GGTTAGAGT--ACTCAGAAACA-GAAAAAGTGTATATAGAGGTTTAAAAA  140

seq1  AAGTGGAAAAAAGTAGATAGTAGAAAAAGAATAAGCCCAGAAATTTCTGG  195
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  AAGTGGAAAAAAGTAGATAGTAG-AAAAGAATAAGCCCAGAAA-TTCTGG  188

seq1  TGCTTGGTTATAGTCGTGGCTTTCTTTTTGCCTGTCTTTTCTCTGTTGTC  245
      ||||||| |||||||||||||||| |||||||||||||||||||| ||||
seq2  TGCTTGGGTATAGTCGTGGCTTTC-TTTTGCCTGTCTTTTCTCTG-TGTC  236

seq1  TCCCTCAGTATTTTCTGGGATCTGAAAATTCTTAAGTTGAAACTTAACCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGTATTTTCTGGGATCTGAAAATTCTTAAGTTGAAACTTAACCA  286

seq1  TTGAGTAGTAGATAAACCTTTAGGAGGTACTTAGAGTTGTGAGGATTCCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAGTAGATAAACCTTTAGGAGGTACTTAGAGTTGTGAGGATTCCA  336

seq1  CCCCTACGAAAGGACTAGTAGCCTTATAAAGGAGAGATGAAGTATGCTGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACGAAAGGACTAGTAGCCTTATAAAGGAGAGATGAAGTATGCTGC  386

seq1  TTCTGTCTTGTGAGGACACTTAGAGGGGCTCTCTCTGGAGCAAGAACAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTGTGAGGACACTTAGAGGGGCTCTCTCTGGAGCAAGAACAAG  436

seq1  CTTTCACCAAACACCTAGTTTGTTGTCATCTCAATCAAATATGTTTTAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCAAACACCTAGTTTGTTGTCATCTCAATCAAATATGTTTTAGT  486

seq1  CTTCAGCACTATCAAAATTTCTATTTGTAAATTACAAATAGAAGATATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCACTATCAAAATTTCTATTTGTAAATTACAAATAGAAGATATTT  536

seq1  TGTGATAGCCCAAATGGTCTAAGATCCTTTCATCTAGTATGCTTCCTTAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAGCCCAAATGGTCTAAGATCCTTTCATCTAGTATGCTTCCTTAT  586

seq1  AGATTAAACCAGCACATTTTGATAGTTGCCATTGCTGGGACTTTACATAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAACCAGCACATTTTGATAGTTGCCATTGCTGGGACTTTACATAC  636

seq1  TCTCTCTCTCTCTACTTCTCAGAGACTGACTGTCTTTTGTAACTCTTTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTACTTCTCAGAGACTGACTGTCTTTTGTAACTCTTTGT  686

seq1  AAAATTTAATGAAGTTTTAGAGTCAGGAAGCTTCTAATATGTGTTACATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAATGAAGTTTTAGAGTCAGGAAGCTTCTAATATGTGTTACATT  736

seq1  TTAAGTGAGACCACTAAAATCTTGTCATCTGGGAACCAAATAGCTATAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGAGACCACTAAAATCTTGTCATCTGGGAACCAAATAGCTATAGT  786

seq1  GGTGAGTGCTGGGAGACTTTACTTTTCTTATTTATTTGTGTGTGCATGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGCTGGGAGACTTTACTTTTCTTATTTATTTGTGTGTGCATGTG  836

seq1  TGTTCTAGAGATGAGACTCAGGTCATTAAGCTTGATGGCAAGGCTTCCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGAGATGAGACTCAGGTCATTAAGCTTGATGGCAAGGCTTCCCA  886

seq1  CTAAGCCATCTTGCTCACTGACTCAATATTCACTGTCTTTTTACTTCCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCATCTTGCTCACTGACTCAATATTCACTGTCTTTTTACTTCCTT  936

seq1  CTGGGAGAAATCACCGATAGGGAGATATTCTGAAATATATTTGGCACATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAAATCACCGATAGGGAGATATTCTGAAATATATTTGGCACATT  986

seq1  CTGGTTATGTATGTTTAAATTTTAGAAACAAACTTTAAAATTATTAATGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTATGTATGTTTAAATTTTAGAAACAAACTTTAAAATTATTAATGG  1036

seq1  AATCATATGAATAAAATATTAAATAATTTTATGTCTAGCAATACTCATAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATGAATAAAATATTAAATAATTTTATGTCTAGCAATACTCATAT  1086

seq1  TTAAAATTTTTTCAGTGTGCTTTCATAGACTTTGATGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTTTCAGTGTGCTTTCATAGACTTTGATGAATTC  1128

seq1: chr11_72936406_72937476
seq2: B6Ng01-279K07.g_64_1132

seq1  GAATTCAAGGCAAGGTTGTTCTACATTCCAAGTTCTAGGTGAGAGCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCAAGGTTGTTCTACATTCCAAGTTCTAGGTGAGAGCTATA  50

seq1  TGGTGAGACACAAAAAGGATCCTAGAGTCTGGCCTCAAGGAAGTGCTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGACACAAAAAGGATCCTAGAGTCTGGCCTCAAGGAAGTGCTCGC  100

seq1  ATGGGGACCATGTTCAGCTCAGCACACAGCCTCAGCAGGCAGGGCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGACCATGTTCAGCTCAGCACACAGCCTCAGCAGGCAGGGCCTCTC  150

seq1  TGCCTGGACCTTGCCCTTCCCAGGCTCATCAGAAGGTCTGGTCTTCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGACCTTGCCCTTCCCAGGCTCATCAGAAGGTCTGGTCTTCAACC  200

seq1  CCAGGCCTTAGAGAGATGTTCCTCAACTTTACGGTGGATGTGGATGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTTAGAGAGATGTTCCTCAACTTTACGGTGGATGTGGATGTGAC  250

seq1  CAAGCAAAGGCAGAGGCTGCAGTGTGAGGACTCGAGCGGTTGTCAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAGGCAGAGGCTGCAGTGTGAGGACTCGAGCGGTTGTCAGAGCT  300

seq1  GCCTCAGGAAGTGGAACGGAGGGTCCTTTCTGTGTGAACACTTCTGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGAAGTGGAACGGAGGGTCCTTTCTGTGTGAACACTTCTGGCTC  350

seq1  ATCTCCACAGAGGAGGTAAGTAGAGAATTTAGACAACAGCCCAGAGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACAGAGGAGGTAAGTAGAGAATTTAGACAACAGCCCAGAGAATG  400

seq1  TGTCTGCAGTGCAGGAGCCTTCCCACACAGACAAAGCAACCATAACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGTGCAGGAGCCTTCCCACACAGACAAAGCAACCATAACATAT  450

seq1  CAAGAACCACAAAGTGACACCAGAAATATAATCCTACTGGAAATCCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCACAAAGTGACACCAGAAATATAATCCTACTGGAAATCCAAAC  500

seq1  TAAAGAAGCTTGGGCTATGGGTGTGTCTCTGTGATGCAGAGTGAGCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGCTTGGGCTATGGGTGTGTCTCTGTGATGCAGAGTGAGCTCTG  550

seq1  CATGCTCTGCATGTGTGAGGCACTGCAGTTAGTGCCCTGGGAAGGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTGCATGTGTGAGGCACTGCAGTTAGTGCCCTGGGAAGGAAGGA  600

seq1  GCAAAGGAAGGAGAAAGCAGGGCAGAGGGAAAGTATCTACCAGAGGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAAGGAGAAAGCAGGGCAGAGGGAAAGTATCTACCAGAGGTGGA  650

seq1  TCTCAGACACCACCACTGAGCTTCCTGGGAGCCGGACGGATAAAGCAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGACACCACCACTGAGCTTCCTGGGAGCCGGACGGATAAAGCAGGG  700

seq1  AATGGCTTAACTATGTTGTCTAATCTTACCTGATAGTAACAGTGGGCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTAACTATGTTGTCTAATCTTACCTGATAGTAACAGTGGGCTAG  750

seq1  AGCCCCTTGAGTAGATCCACATCAGAAAATTAGAATGAAAAGGCAGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTGAGTAGATCCACATCAGAAAATTAGAATGAAAAGGCAGAACT  800

seq1  AGAAAGACAGAGTTACTGGGCAGTGGTGACACACGCC-TTTAATCCCAGC  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAAGACAGAGTTACTGGGCAGTGGTGACACACGCCTTTTAATCCCAGC  850

seq1  ACTT-GGGAGGCAG-AGGCAGGCGGATCTC-TGAGTTCAAGGCCAGCCTG  896
      |||| ||||||||| ||||||||||||||| |||||||||||||||||||
seq2  ACTTGGGGAGGCAGAAGGCAGGCGGATCTCTTGAGTTCAAGGCCAGCCTG  900

seq1  GTCTACAG-AGTGAGTTCCGGGACAGCAAGGGCTACACAGAGAAACTCTC  945
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  GTCTACAGAAGTGAGTTCC-GGACAGCAAGGGCTACACAGAGAAACTCTC  949

seq1  -TCAAAAAAACAAAAAACAAAACAAAACAAAAAGACAGTTATTTTTTAAA  994
       |||||||||| |||||||||   ||||||||  |||||   ||||| ||
seq2  TTCAAAAAAAC-AAAAACAAA--CAAACAAAAGAACAGT--ATTTTTGAA  994

seq1  AGGTTATTTAAAAGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGAGTTTG  1044
      ||||||||| ||||||||||||||||||||||  |||||||| |||||||
seq2  AGGTTATTT-AAAGAGCTAGAGAAAGTACCCA--GAGCTGAAAGAGTTTG  1041

seq1  -CAACCCTATAGGTGGGACAACAATATG  1071
       ||||| |  | ||||||||||||||||
seq2  CCAACCGTTAAAGTGGGACAACAATATG  1069