BAC Information

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BAC

Clone NameB6Ng01-279N09
Chromosome11 (Build37)
Map Location 96,862,939 - 97,034,804
singlet/doubletdoublet
Overlap geneSp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1
Upstream geneIgf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2
Downstream geneNpepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279N09.bB6Ng01-279N09.g
ACCGA079713GA079714
length1,152167
definitionB6Ng01-279N09.b B6Ng01-279N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,033,661 - 97,034,804)(96,862,939 - 96,863,107)
sequence
gaattcattgcaagaaaagcttacttaggctgggcgtggtggcgcacgcc
tttaatcccagcactggggaggcagagacaggtggatttctgagtttgag
gccagcctggttgcaggacagccagggctacacagagaaatcctgtctca
aaaaaaaaaaaaaaaaaaaaaaaaagcaaagcaaagcttacgtagtgcca
catctgtcaccaggatgaaaacgatgacgacgatgactggaacccttgca
aagcagctggggtgtgcctcatgctcctgtccacctgctgtgaagatgac
attgtgccgcatgtccttccctttattaaagagcacatcaagaaccctga
ctggcgataccgggatgcagcagtgatggcttttggcagtatcttggaag
gaccagagcctaatcaactgaaaccattagtcatacaggtaaagcccggg
gaagttttagatttgaaatggaatgggggtggagagtgcgcacatgtaat
atatgtgtgactctaaataatcacaaagatttccaaataattgaatggtt
cgtagcacaggcctacaaacccaaatcacacattcttgtggggattaaca
ggtcagttgctcaagggtgccacccttaactggataatagtgagaccatc
ctatgctatgcaatacatttcctgtcttagtatagtttcttgtcattaat
ggtgaaatatataacttttaaaatttagtcatgaccaagaaacttgaaaa
aaagaaaaggctttaccttatatctcttaacttagcacttgttttctgta
attttttggagagcaggatatggagctcttcactatgaagattgtcttac
aggatcttttcttattttctttttttttaaatgctacattgtaaggcatt
ttcctgttgcttttgggactgggagagcctccacatatatcccagggtag
ccctactgcctcagcctggtgagtggctgccattattccactagctctga
gcctccagggctcacaacgattgtctttcactcagtcttctaagcaatgg
gaatttattctggtgcagtgctaagccatttacctcggtgtttgattgtt
tgattgttggtctgttgatcgataggaccggtgttagacctaaatcagga
tg
taggaagggcctgtgtgtgtgtacgcatgtatgaagattacccataaagg
ttgctgagatgatgtggcaagcagtggggggtgggggggggactcctgag
tgtggacagtcctatccatctgtgatacagactcttgagactagtactct
gtggatggatgcggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97033661_97034804
seq2: B6Ng01-279N09.b_51_1202 (reverse)

seq1  CATCCTGATTTAAGGCCCAACACACAGGACCCTAAACAAACAAACAAACA  50
      ||||||||||| ||| | |  |||| || ||   | | | | |||| || 
seq2  CATCCTGATTT-AGGTCTA--ACACCGGTCC--TATCGATC-AACAGACC  44

seq1  AACAAACAAACAAACAAACACAGA-GTAAATGGCTAAGCACTGCA-CAGT  98
      ||||| ||||||| ||||||| || |||||||||| ||||||||| ||| 
seq2  AACAATCAAACAATCAAACACCGAGGTAAATGGCTTAGCACTGCACCAGA  94

seq1  AT-AATTCCCATTTGCTTAGAAGGCTGAGTG-AAGACATTCGTTGTGAGC  146
      || |||||||| ||||||||||| ||||||| |||||| |||||||||||
seq2  ATAAATTCCCA-TTGCTTAGAAGACTGAGTGAAAGACAATCGTTGTGAGC  143

seq1  CCTGGA-GCTCAGAGCTAGTGGA--TATGGCAG-CACTCA-CAGGCTGAG  191
      |||||| ||||||||||||||||   ||||||| |||||| |||||||||
seq2  CCTGGAGGCTCAGAGCTAGTGGAATAATGGCAGCCACTCACCAGGCTGAG  193

seq1  GCAGTA-GGCTACCCTGGGATATATGTGGAGGCTCT-CCAGT-CCAAAAG  238
      |||||| ||||||||||||||||||||||||||||| ||||| |||||||
seq2  GCAGTAGGGCTACCCTGGGATATATGTGGAGGCTCTCCCAGTCCCAAAAG  243

seq1  CAACAGGAAAATG-CTTACAATGTAGCATTT-AAAAAAAAGAAAATAAGA  286
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CAACAGGAAAATGCCTTACAATGTAGCATTTAAAAAAAAAGAAAATAAGA  293

seq1  AAAGATCCTGGTAAGACAATCTTCATAGTG-AGAGCTCCATATCCTGCTC  335
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  AAAGATCCT-GTAAGACAATCTTCATAGTGAAGAGCTCCATATCCTGCTC  342

seq1  TCC-AAAAATTACAGAAAACAAGTGCTAAGTTAAGAGATATAAGGTAAAG  384
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAATTACAGAAAACAAGTGCTAAGTTAAGAGATATAAGGTAAAG  392

seq1  CCTTTTCTTTTTTTCAAGTTTCTTGGTCATGACTAAATTTTAAAAGTTAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTTTTTTCAAGTTTCTTGGTCATGACTAAATTTTAAAAGTTAT  442

seq1  ATATTTCACCATTAATGACAAGAAACTATACTAAGACAGGAAATGTATTG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCACCATTAATGACAAGAAACTATACTAAGACAGGAAATGTATTG  492

seq1  CATAGCATAGGATGGTCTCACTATTATCCAGTTAAGGGTGGCACCCTTGA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCATAGGATGGTCTCACTATTATCCAGTTAAGGGTGGCACCCTTGA  542

seq1  GCAACTGACCTGTTAATCCCCACAAGAATGTGTGATTTGGGTTTGTAGGC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGACCTGTTAATCCCCACAAGAATGTGTGATTTGGGTTTGTAGGC  592

seq1  CTGTGCTACGAACCATTCAATTATTTGGAAATCTTTGTGATTATTTAGAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTACGAACCATTCAATTATTTGGAAATCTTTGTGATTATTTAGAG  642

seq1  TCACACATATATTACATGTGCGCACTCTCCACCCCCATTCCATTTCAAAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATATATTACATGTGCGCACTCTCCACCCCCATTCCATTTCAAAT  692

seq1  CTAAAACTTCCCCGGGCTTTACCTGTATGACTAATGGTTTCAGTTGATTA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTTCCCCGGGCTTTACCTGTATGACTAATGGTTTCAGTTGATTA  742

seq1  GGCTCTGGTCCTTCCAAGATACTGCCAAAAGCCATCACTGCTGCATCCCG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGTCCTTCCAAGATACTGCCAAAAGCCATCACTGCTGCATCCCG  792

seq1  GTATCGCCAGTCAGGGTTCTTGATGTGCTCTTTAATAAAGGGAAGGACAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGCCAGTCAGGGTTCTTGATGTGCTCTTTAATAAAGGGAAGGACAT  842

seq1  GCGGCACAATGTCATCTTCACAGCAGGTGGACAGGAGCATGAGGCACACC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCACAATGTCATCTTCACAGCAGGTGGACAGGAGCATGAGGCACACC  892

seq1  CCAGCTGCTTTGCAAGGGTTCCAGTCATCGTCGTCATCGTTTTCATCCTG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCTTTGCAAGGGTTCCAGTCATCGTCGTCATCGTTTTCATCCTG  942

seq1  GTGACAGATGTGGCACTACGTAAGCTTTGCTTTGCTTTTTTTTTTTTTTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGATGTGGCACTACGTAAGCTTTGCTTTGCTTTTTTTTTTTTTTT  992

seq1  TTTTTTTTTTTGAGACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGCAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGAGACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGCAA  1042

seq1  CCAGGCTGGCCTCAAACTCAGAAATCCACCTGTCTCTGCCTCCCCAGTGC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCAAACTCAGAAATCCACCTGTCTCTGCCTCCCCAGTGC  1092

seq1  TGGGATTAAAGGCGTGCGCCACCACGCCCAGCCTAAGTAAGCTTTTCTTG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCGTGCGCCACCACGCCCAGCCTAAGTAAGCTTTTCTTG  1142

seq1  CAATGAATTC  1144
      ||||||||||
seq2  CAATGAATTC  1152

seq1: chr11_96862939_96863107
seq2: B6Ng01-279N09.g_71_237

seq1  TAGGAAGGGCCTGTGTGTGTGTACGCATGTATGAAGATTACCCATAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGGCCTGTGTGTGTGTACGCATGTATGAAGATTACCCATAAAGG  50

seq1  TTGCTGAGATGATGTGGCAAGCAGTGGGGGGTGGGGGGGGGAGCTCCTGA  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGCTGAGATGATGTGGCAAGCAGTGGGGGGTGGGGGGGGGA-CTCCTGA  99

seq1  GTGTGGACAGTCAAATCCATCTGTGATAGAGACAGCTTGAGACTAGCAAT  150
      ||||||||||||  |||||||||||||| ||||  ||||||||||| | |
seq2  GTGTGGACAGTCCTATCCATCTGTGATACAGAC-TCTTGAGACTAGTACT  148

seq1  CTGTGGATGGATGCGGAAA  169
      |||||||||||||||||||
seq2  CTGTGGATGGATGCGGAAA  167