BAC Information

Click to search

BAC

Clone NameB6Ng01-280A20
Chromosome11 (Build37)
Map Location 59,563,207 - 59,564,312
singlet/doubletsinglet
Overlap geneAA536749
Upstream geneOlfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225
Downstream gene4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280A20.bB6Ng01-280A20.g
ACCGA079879GA079880
length8021,107
definitionB6Ng01-280A20.b B6Ng01-280A20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcttcaatggtgaattaagagttcctgtttctccacatcctctc
caacgtttgtggtcagatttattgacaaacgccatttggactggggttag
gtggtacctcaaagtagttttgattggcattccctaatggtgggggtatt
ggataattttaaaaatagtaaattggccatctgtctgtgtgtctttttaa
aaatctgtctattcagttcatttgtccatttgctggttggcagttttatt
cccttggcgtttaatctccacagttctttctaagttctggacattatccc
ctctctgaagtgtactgggtaccgattttctccccttctctgggctgtct
gttaactgctgactgtgtcctgtgcagagaactgtcattctcctgttcct
atcagttgatggtggagttagttcctgtgctgctggtattctgtttaaaa
cagtcttgccttccccaatctcctgaggggtattcatagcctgtgttttc
ttctaaagtttctggacttttagattttaccttaagggtttttatccatt
ttgaactgggttttgtacaaagtgaaggatataaatctaatttaatcctc
ccgcaggtggagccagctctgccagcactgtttattggctagactagctc
tttttccaaaacatgttttttgcctcctttgccaatttgagtggcccagc
ctgctattttatttccaaatcctctgtcctatcccatgggacctaaggga
aaaccttagtgccattcgtttctgctaaagaaacatgggggggggaggga
ct
gaattcctttcctcctggcccactgtcagctggttccatgttccctgtga
ttctttgcttttcttcctctgctgaccttccttacgttgagctggcctga
taagccacacaggtcactctcatgcctgttctcagagtggaggtctttgt
cagcagagtttagccctcagactgggttcaggctccactgtgggccttcg
ctggtagctgcactctagctctgggtggaagcagagttttgctttatgtc
tactgtagtttgcactgttgtttttcacttcttcattagagtcgtacatc
tgcctggttggtaacataatcgggagatacttctgtctcaggtgggtcct
gaagcccacatttgaaaactctgttcccttgtgttaatgtgctattgtgt
gtatttcttagaacatgcagaatagaaaggggaggcattctattctgaag
attctagatctcccagtgttcatcttcaggacaacccagaggctccatgt
gtgacaagtcttactgttcttcacccaggtctcaccttgagtactttctg
cctctcttggttcatgttgctgccaagtatggttttgggatcagaggttt
cggtgtatgttggcctgtgacagcattggctgtacctattctttcctcaa
cgctctgtctgtctggctctatttcttgttgaatgagcaggaaaggaagc
ctgaccctcctgtcttcagtccccttccagggattgttatatggtcgttt
cttttactcgtcagtaaacagcatcctgactgctgcagtacaggaccagt
gtgggtctgcaaggcctacttttatccataaaatagccctctgtcactct
tcaagaactgtgctagggggttagacagatggctgctctttcagaggacc
cagtttcaagtctctgcacccactgagtttccaggaagagccaacatcgt
tttctggcccccaatagacactgcgtgtacttgatacacggatgttacat
tgcaggcaaaacacccaatacacattaaaaaaaattttttttttattctt
ttaaaaaactgttgaaatgtacagtggctcctaccccatggctccttcag
tctaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59563207_59564312
seq2: B6Ng01-280A20.g_69_1175

seq1  GAATTCCTTTCCTCCTGGCCCACTGTCAGCTGGTTCCATGTTCCCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCTCCTGGCCCACTGTCAGCTGGTTCCATGTTCCCTGTGA  50

seq1  TTCTTTGCTTTTCTTCCTCTGCTGACCTTCCTTACGTTGAGCTGGCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCTTTTCTTCCTCTGCTGACCTTCCTTACGTTGAGCTGGCCTGA  100

seq1  TAAGCCACACAGGTCACTCTCATGCCTGTTCTCAGAGTGGAGGTCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACACAGGTCACTCTCATGCCTGTTCTCAGAGTGGAGGTCTTTGT  150

seq1  CAGCAGAGTTTAGCCCTCAGACTGGGTTCAGGCTCCACTGTGGGCCTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGTTTAGCCCTCAGACTGGGTTCAGGCTCCACTGTGGGCCTTCG  200

seq1  CTGGTAGCTGCACTCTAGCTCTGGGTGGAAGCAGAGTTTTGCTTTATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGCTGCACTCTAGCTCTGGGTGGAAGCAGAGTTTTGCTTTATGTC  250

seq1  TACTGTAGTTTGCACTGTTGTTTTTCACTTCTTCATTAGAGTCGTACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGTTTGCACTGTTGTTTTTCACTTCTTCATTAGAGTCGTACATC  300

seq1  TGCCTGGTTGGTAACATAATCGGGAGATACTTCTGTCTCAGGTGGGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTTGGTAACATAATCGGGAGATACTTCTGTCTCAGGTGGGTCCT  350

seq1  GAAGCCCACATTTGAAAACTCTGTTCCCTTGTGTTAATGTGCTATTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCACATTTGAAAACTCTGTTCCCTTGTGTTAATGTGCTATTGTGT  400

seq1  GTATTTCTTAGAACATGCAGAATAGAAAGGGGAGGCATTCTATTCTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTTAGAACATGCAGAATAGAAAGGGGAGGCATTCTATTCTGAAG  450

seq1  ATTCTAGATCTCCCAGTGTTCATCTTCAGGACAACCCAGAGGCTCCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATCTCCCAGTGTTCATCTTCAGGACAACCCAGAGGCTCCATGT  500

seq1  GTGACAAGTCTTACTGTTCTTCACCCAGGTCTCACCTTGAGTACTTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGTCTTACTGTTCTTCACCCAGGTCTCACCTTGAGTACTTTCTG  550

seq1  CCTCTCTTGGTTCATGTTGCTGCCAAGTATGGTTTTGGGATCAGAGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGGTTCATGTTGCTGCCAAGTATGGTTTTGGGATCAGAGGTTT  600

seq1  CGGTGTATGTTGGCCTGTGACAGCATTGGCTGTACCTATTCTTTCCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTATGTTGGCCTGTGACAGCATTGGCTGTACCTATTCTTTCCTCAA  650

seq1  CGCTCTGTCTGTCTGGCTCTATTTCTTGTTGAATGAGCAGGAAAGGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGTCTGTCTGGCTCTATTTCTTGTTGAATGAGCAGGAAAGGAAGC  700

seq1  CTGA-CCTCCTGTCTTCAGTCCCCTTCCAGGGATTGTTATATGGTCGTTT  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTCCTGTCTTCAGTCCCCTTCCAGGGATTGTTATATGGTCGTTT  750

seq1  C-TTTACTCGTCAGTAAACAGCATCCTGACTGCTGCAGTACAGGACCAGT  798
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTCGTCAGTAAACAGCATCCTGACTGCTGCAGTACAGGACCAGT  800

seq1  GTGGGTCTGCAAGGCCTACTTTTATCCATAAAATAGCCCTCTGTCACTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTGCAAGGCCTACTTTTATCCATAAAATAGCCCTCTGTCACTCT  850

seq1  TCAAGAACTGTGCTAGGGGGTTAGACAGATGGCTGCTCTTTCAGAGGACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACTGTGCTAGGGGGTTAGACAGATGGCTGCTCTTTCAGAGGACC  900

seq1  CAGGTTCAAGTCTCTGCACCCACTGAG-TTCCAGG-AGAGCCAACATCCT  946
      ||| ||||||||||||||||||||||| ||||||| |||||||||||| |
seq2  CAGTTTCAAGTCTCTGCACCCACTGAGTTTCCAGGAAGAGCCAACATCGT  950

seq1  TTTCTGGCCCCC-ATAGACACTGCGTGTACTTGATACACAGATG-TACA-  993
      |||||||||||| |||||||||||||||||||||||||| |||| |||| 
seq2  TTTCTGGCCCCCAATAGACACTGCGTGTACTTGATACACGGATGTTACAT  1000

seq1  TGCAGGCAAAACACCC-ATACACATTAAAAAAAAATTTTTTTTTAATTTC  1042
      |||||||||||||||| ||||||||||||||||| ||||||||||  |||
seq2  TGCAGGCAAAACACCCAATACACATTAAAAAAAATTTTTTTTTTA--TTC  1048

seq1  TTTTAAAAAAAACTGTTGAAAATGAACAGTGGCCTCCCTACCCCCATGGC  1092
      ||||  |||||||||||| ||||| ||||||||   |||| |||||||||
seq2  TTTT--AAAAAACTGTTG-AAATGTACAGTGGC--TCCTA-CCCCATGGC  1092

seq1  TCCTCCAGTC-AAGA  1106
      |||| ||||| ||||
seq2  TCCTTCAGTCTAAGA  1107