BAC Information

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BAC

Clone NameB6Ng01-280C08
Chromosome11 (Build37)
Map Location 27,986,751 - 27,987,974
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042377
Downstream geneEG626571, Ccdc85a, Efemp1, LOC382504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280C08.bB6Ng01-280C08.g
ACCGA079948GA079949
length1,206984
definitionB6Ng01-280C08.b B6Ng01-280C08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtaccagatcagtaaagttcccagagccaatcctaaagacac
ccatactcctatagactgagccaaccaatcaagggaaaggtcacctaccc
ctccctggaattctcataatctgctttaaattgaacctcctccaagttca
ccagcacatctccattttgacagtggcagacccatgcatggtggatttct
ccaaaatcactcattgcttttgcataccttttaagtctggggaatcattc
tttggagaatcacagacccatacactgggcagctcacctgggatttactg
gagaaccctgactcaaataattgagtgtttctctaatcttttagaggcag
gttatctctcctttctgtgtttctgttccatttttaatctggatgctgag
agaaacaaaacagatgcattagatgcatattttatcacccagccaggagt
taagaaggttgctcccaacatcctaccaggaataggagacttgctagttc
tcatcagatttctgaagtgggcataggtttctgggactcctgtgcacagg
aaggatgactatgtgagacagcgttttcatttctgcttttgtttatctgg
caatgaatttttatatctatctgtgtgtattctgtttgtgctttttttgt
ccccttgtccaaagtttttctttgattcctaagatgggacagtcacagaa
caccccattctgcttagctgtaaaccattttaagaacttctactgaatgg
cagaaaactaagctctgattgtttgtcccagcaaactcaccatattttgc
aagaacgaatgacccaaaaagaaagtagaatggcctaaggaggaaactta
tcatctctccactatacagggtgagaaatgttgtctatgaggctaggagc
cactcagaacaggtggtgtatatcacctggttgagaagtcccctgtttgt
tgagaccctttttgtccctgccagtgtaggcagaagaaaagtagcccctg
atgcctcagactccctgattccacctggagatcactcatactcaggctgc
acacccagaggggtggactctatttataccccacccctcaaggttacagg
gcccaagatgctcagggagaaggtatgaacttatttcattatgaccttgc
agttagaaattcgaatctgattcgagagacctcagctctcaatgctcttt
atattt

gaattccttgatccacttatatttgaccttagtacaaggagataggaatg
gatcaattctctttcttctgcatgataaccaccagttgtgccagcaccat
ttgttgaaaatgctgtcttttttccagtggatggttttatctcccttgtc
aaagttcaagtgaccataggtgtgtgggttcatttctgggtcctcaattc
tattccattggtctacttgtctgtctctataccagtaccatgcagttttt
atcacaactgctatgtagtacagctttaggtcaggcatggtgattccacc
agaggctcttttatccttgagaagagtttttgctatcctaggttttttgt
tattccagatgaatttgcagatttccctttctaatttgttgaaaaattga
gttggaattttgatggggattgcattgaatctgtagattgcttttggcaa
gatagtcattttcactatattgatcctgccaatccatgagcatgggagat
ctttctatcttctgagatctttaatttctttcttcagaaacttgaagttc
ttatcatacagatctttcacttccttagagtcacaccaaggttttttttt
attatttgtgactattcagaagggttttgtttcactaatttctttctcag
tctgtttatcctttgtgtacagaaaggtcactgacttgtttgagttaatt
ttatattctgctacttcactgaagctatttatcaggtttaggagttctct
ggtggaatttttagggtcacttatatatattattatatcatctgcaaaag
tgatattttcacttcttcctttcccatttgtatccccttgttctcctttt
gctgtcgaattgctctggctaggacttcaagtacaatgttgaataggtaa
ggagaaagtggtcagccttgcctagtccctgattttagtgaattgcttcc
agcttctcaccatttacattgatgttggctactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27986751_27987974
seq2: B6Ng01-280C08.b_44_1249 (reverse)

seq1  AAATATAAAAGAGCTATGAGAGCTGAGGGTCTCTCTGAATATTGGGTATT  50
      |||||| |||||||  |||||||||| |||||||| ||||       |||
seq2  AAATAT-AAAGAGCATTGAGAGCTGA-GGTCTCTC-GAAT----CAGATT  43

seq1  CTGAAATTTCTAACTGCAAAGGTCATTATTGGAAAATAGGTCATTAACCT  100
      |   ||||||||||||| |||||||| ||  ||||  || ||||  ||||
seq2  C--GAATTTCTAACTGC-AAGGTCATAAT--GAAATAAGTTCAT--ACCT  86

seq1  TCTCCCCTGAGCATCTTGGGGCCCTGTAACCCTGAGGGGTGGGGTTATAA  150
      ||| ||||||||||||| ||||||||||||| |||||||||||||   ||
seq2  TCT-CCCTGAGCATCTT-GGGCCCTGTAACCTTGAGGGGTGGGGTATAAA  134

seq1  TAGAGT-CACCCCTCTGGGTTGTGCAGGCCTGAGTATGAGGTGATCTCCA  199
      |||||| |||||||||||| |||||| |||||||||||| ||||||||||
seq2  TAGAGTCCACCCCTCTGGG-TGTGCA-GCCTGAGTATGA-GTGATCTCCA  181

seq1  GGTGGAATCAGGGGAGTCTGAGGCATCAGGGGCTACTTTTC-TCTGCCTA  248
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  GGTGGAATCA-GGGAGTCTGAGGCATCAGGGGCTACTTTTCTTCTGCCTA  230

seq1  CACTGGCAGGGACAAAAAGGGTCTCAACAAACAGGGGACTTCTCAACCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAGGGACAAAAAGGGTCTCAACAAACAGGGGACTTCTCAACCAG  280

seq1  GTGATATACACCACCTGTTCTGAGTGGCTCCTAGCCTCATAGACAACATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATACACCACCTGTTCTGAGTGGCTCCTAGCCTCATAGACAACATT  330

seq1  TCTCACCCTGTATAGTGGAGAGATGATAAGTTTCCTCCTTAGGCCATTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCTGTATAGTGGAGAGATGATAAGTTTCCTCCTTAGGCCATTCT  380

seq1  ACTTTCTTTTTGGGTCATTCGTTCTTGCAAAATATGGTGAGTTTGCTGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTTTGGGTCATTCGTTCTTGCAAAATATGGTGAGTTTGCTGGG  430

seq1  ACAAACAATCAGAGCTTAGTTTTCTGCCATTCAGTAGAAGTTCTTAAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAATCAGAGCTTAGTTTTCTGCCATTCAGTAGAAGTTCTTAAAAT  480

seq1  GGTTTACAGCTAAGCAGAATGGGGTGTTCTGTGACTGTCCCATCTTAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACAGCTAAGCAGAATGGGGTGTTCTGTGACTGTCCCATCTTAGGA  530

seq1  ATCAAAGAAAAACTTTGGACAAGGGGACAAAAAAAGCACAAACAGAATAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAAAAACTTTGGACAAGGGGACAAAAAAAGCACAAACAGAATAC  580

seq1  ACACAGATAGATATAAAAATTCATTGCCAGATAAACAAAAGCAGAAATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATAGATATAAAAATTCATTGCCAGATAAACAAAAGCAGAAATGA  630

seq1  AAACGCTGTCTCACATAGTCATCCTTCCTGTGCACAGGAGTCCCAGAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTGTCTCACATAGTCATCCTTCCTGTGCACAGGAGTCCCAGAAAC  680

seq1  CTATGCCCACTTCAGAAATCTGATGAGAACTAGCAAGTCTCCTATTCCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCACTTCAGAAATCTGATGAGAACTAGCAAGTCTCCTATTCCTG  730

seq1  GTAGGATGTTGGGAGCAACCTTCTTAACTCCTGGCTGGGTGATAAAATAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGTTGGGAGCAACCTTCTTAACTCCTGGCTGGGTGATAAAATAT  780

seq1  GCATCTAATGCATCTGTTTTGTTTCTCTCAGCATCCAGATTAAAAATGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAATGCATCTGTTTTGTTTCTCTCAGCATCCAGATTAAAAATGGA  830

seq1  ACAGAAACACAGAAAGGAGAGATAACCTGCCTCTAAAAGATTAGAGAAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACACAGAAAGGAGAGATAACCTGCCTCTAAAAGATTAGAGAAAC  880

seq1  ACTCAATTATTTGAGTCAGGGTTCTCCAGTAAATCCCAGGTGAGCTGCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTATTTGAGTCAGGGTTCTCCAGTAAATCCCAGGTGAGCTGCCC  930

seq1  AGTGTATGGGTCTGTGATTCTCCAAAGAATGATTCCCCAGACTTAAAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATGGGTCTGTGATTCTCCAAAGAATGATTCCCCAGACTTAAAAGG  980

seq1  TATGCAAAAGCAATGAGTGATTTTGGAGAAATCCACCATGCATGGGTCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAAGCAATGAGTGATTTTGGAGAAATCCACCATGCATGGGTCTG  1030

seq1  CCACTGTCAAAATGGAGATGTGCTGGTGAACTTGGAGGAGGTTCAATTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCAAAATGGAGATGTGCTGGTGAACTTGGAGGAGGTTCAATTTA  1080

seq1  AAGCAGATTATGAGAATTCCAGGGAGGGGTAGGTGACCTTTCCCTTGATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATTATGAGAATTCCAGGGAGGGGTAGGTGACCTTTCCCTTGATT  1130

seq1  GGTTGGCTCAGTCTATAGGAGTATGGGTGTCTTTAGGATTGGCTCTGGGA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTCAGTCTATAGGAGTATGGGTGTCTTTAGGATTGGCTCTGGGA  1180

seq1  ACTTTACTGATCTGGTACTGGAATTC  1224
      ||||||||||||||||||||||||||
seq2  ACTTTACTGATCTGGTACTGGAATTC  1206


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