BAC Information

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BAC

Clone NameB6Ng01-280C19
Chromosome11 (Build37)
Map Location 96,648,293 - 96,648,995
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11
Downstream geneCbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280C19.bB6Ng01-280C19.g
ACCGA079968GA079969
length224707
definitionB6Ng01-280C19.b B6Ng01-280C19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgcctctactcaaaattaccaaaaaagaagaaggaagaggagaagggg
gaagaggaggaagagaaggaggaagaggagaagggggaagaggagaagga
ggaagagagaagggaaaggaggaagagaaggaggaaaaggaggaggaaga
ggaagaggaggatgaggaggaagagaagtcgtctacttccagctccctcc
ccctgacctttactcacatgctgg
gaattcagcttaatgtgggggtggggggaatagcagcatttgatttggtc
attagaaatgcaattatatttgggataccagttctcatctctaatggaga
actcgatagattagctggagctgagctgcacattaaatctctaaccagga
gacaaaggctgaagtttcctatttaacaaatcaaagctggcctggccacc
aggtcccccagcatccctcagctctgacctgttaccccagaattcgttag
accaggggctgggctgcccttcccccagaggctcctcccagccattttgg
ttaccttcctaccccatttttaatgctttcccatcttggttgctgcacct
ggttcccctctttccttctctctgccttctcctcacatggcttaaaggca
tccagaacgggtgggttgtcgcctggttttggaggcttgacccaagtatt
ttttcaggaagaatcggtctcttttgactaatttttatataacattgtga
aactaaccctctttttcttttgtcttagttttttgaacagaaaagttgtc
actgtttcggggtttttttgatttttggtttgtttgtttgtttttttttt
taagacaagctctcactctgtaacctaggctacatagtctaaactgcgct
ttttttttttttttttttttttggttttgctgtttgtgtttgttttgttt
tgtttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96648293_96648995
seq2: B6Ng01-280C19.g_71_777

seq1  GAATTCAGCTTAATGTGGGGGTGGGGGGAATAGCAGCATTTGATTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTAATGTGGGGGTGGGGGGAATAGCAGCATTTGATTTGGTC  50

seq1  ATTAGAAATGCAATTATATTTGGGATACCAGTTCTCATCTCTAATGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATGCAATTATATTTGGGATACCAGTTCTCATCTCTAATGGAGA  100

seq1  ACTCGATAGATTAGCTGGAGCTGAGCTGCACATTAAATCTCTAACCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGATAGATTAGCTGGAGCTGAGCTGCACATTAAATCTCTAACCAGGA  150

seq1  GACAAAGGCTGAAGTTTCCTATTTAACAAATCAAAGCTGGCCTGGCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGCTGAAGTTTCCTATTTAACAAATCAAAGCTGGCCTGGCCACC  200

seq1  AGGTCCCCCAGCATCCCTCAGCTCTGACCTGTTACCCCAGAATTCGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCCCAGCATCCCTCAGCTCTGACCTGTTACCCCAGAATTCGTTAG  250

seq1  ACCAGGGGCTGGGCTGCCCTTCCCCCAGAGGCTCCTCCCAGCCATTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGCTGGGCTGCCCTTCCCCCAGAGGCTCCTCCCAGCCATTTTGG  300

seq1  TTACCTTCCTACCCCATTTTTAATGCTTTCCCATCTTGGTTGCTGCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCCTACCCCATTTTTAATGCTTTCCCATCTTGGTTGCTGCACCT  350

seq1  GGTTCCCCTCTTTCCTTCTCTCTGCCTTCTCCTCACATGGCTTAAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCCTCTTTCCTTCTCTCTGCCTTCTCCTCACATGGCTTAAAGGCA  400

seq1  TCCAGAACGGGTGGGTTGTCGCCTGGTTTTGGAGGCTTGACCCAAGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACGGGTGGGTTGTCGCCTGGTTTTGGAGGCTTGACCCAAGTATT  450

seq1  TTTTCAGGAAGAATCGGTCTCTTTTGACTAATTTTTATATAACATTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGAAGAATCGGTCTCTTTTGACTAATTTTTATATAACATTGTGA  500

seq1  AACTAACCCTCTTTTTCTTTTGTCTTAGTTTTTTGAACAGAAAAGTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCCTCTTTTTCTTTTGTCTTAGTTTTTTGAACAGAAAAGTTGTC  550

seq1  ACTGTTTCGGGGTTTTTTTGATTTTTGGTTTGTTTGTTTGTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCGGGGTTTTTTTGATTTTTGGTTTGTTTGTTTGTTTTTTTTTT  600

seq1  TAAGACAAGCTCTCACTCTGTAACCTAGGCTACATAGTCTAAACTGCGC-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAGACAAGCTCTCACTCTGTAACCTAGGCTACATAGTCTAAACTGCGCT  650

seq1  TTTTTTTTTTTTTTTTTTTTTTGGGTTTGCTG-TTGTGTTTGTTT--GTT  696
      |||||||||||||||||||||||| ||||||| ||||||||||||   ||
seq2  TTTTTTTTTTTTTTTTTTTTTTGGTTTTGCTGTTTGTGTTTGTTTTGTTT  700

seq1  TGTTTGA  703
      |||||||
seq2  TGTTTGA  707