BAC Information

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BAC

Clone NameB6Ng01-280E23
Chromosome11 (Build37)
Map Location 33,406,539 - 33,542,321
singlet/doubletdoublet
Overlap geneRanbp17, Gabrp, D130052B06Rik, Kcnip1
Upstream geneUbtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, LOC666258, Anp32c, LOC669306, LOC666269
Downstream geneKcnmb1, Lcp2, Foxi1, Dock2, EG574403, Dock2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280E23.bB6Ng01-280E23.g
ACCGA080069GA080070
length1,021901
definitionB6Ng01-280E23.b B6Ng01-280E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,541,651 - 33,542,321)(33,406,539 - 33,407,441)
sequence
gaattcattcagcttcctggatgctggagacatccagcaatcggcccacg
tctgactgtcatggggcagtggagtggaaaggacaatcacagcaaaatgt
acaatgacaggtagatgttttggtaagagtcagcaaggggctgtctaatt
cggtattgccataccaagggaaaggcacccccaaagtcaggaaaagtatc
ccaggaagaagaaactgccattagaagatggggttcccacatgccctcca
aacagagaggcttgttggtggctgcaggctaggaagatacggaagaaaag
tagacaggcttcagcctggaaggttgtcaggttcagatggtggaaggctg
gggtagagagtccactctacctccggggagctggggtgtagagcagagtt
ttcagaaaacactaactactaacggtggctcaaagacagcaggaaaaggt
aagtagctccctgtccctaagagaaatacaattcacatttaaaaacccag
aaaagttcgagctcctcggatgattttctggtgacttctaacaaagacct
acaaagctggggcgcaaggaactttccaatgtttttctgtaaatccaaca
ataccccgattctgaaatttgaaataaaaaaggtctgatggagaagacaa
ctaccattatttctcacgatgacagatgcaaaaaaacctatcaaaacttt
agtaaaccgaatctatcaatacattaaaaaatacagaatagcgtaacaga
gcaaagttcattccaggaatgcaaggttggcttaacactcaaacatccac
atcattcactatatttacacaacaaaaagaaaaactatattgactaaata
aatgcagaaaaagcacttgataaaatcaccgcctatttatggtaaacttt
ttaacaaatggagaataaaagatccttttctcagcctagttatctgataa
ctattttagaacactacagctaatatctgctttacagtgaattattgcat
atttcctccaagggccaagaa
gaattcaatgccatcgtgggctacatacaaaatttctaacaaaattagca
aaagtcttctctgacaggtgggaggcagtggcccccttcctgtcacgttg
aactttccccaaactgcataggaacataaggattattcatgaagcaggac
gttccttctatcaacccaccaacacatggggacacgtgagtgcctgcctg
ggactcgtggagcactatgaaatgtcagggtaaaatacagagccccaaac
accaaatgttcttgaaaatgttaccgtccctaaagtgccatttgcacccc
tcaccaaactccttgcaaacgctcgggaccatggaagttggccatgcttg
tgatggtcattctcaccagtctctccaaaacccagccaaattctctgcaa
agggaaaggggcttcagatgcaaaaagatacaggggagaaggccataaga
agacaggcagagtccgggaggccatatctaacaccaaaaagttctaaagc
tgccaaaaactctgagaagctaggccaaaggcctccagatggaagcaagc
catctgccctctgtctcagccttctggccttcattcagaactgagaacaa
attggagttttaagccaccccagttgtggcaatgttacaaaagacctaga
aaactaatatttaaaaaagataaatgatgggctggagagatggctcagtg
gttaagagcacttactgctcttccagaggtcctgagttcaattcccagca
accacaccgtggctcacaaccaccatctgtaatgggatccgattccttct
tctggtgtgtctgaagacagctacagtgtactcatcatatatatacatat
atatgtgtgtgtgtatatatgtgtacgtgtgtgtgtgtgttgtgtggtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_33541651_33542321
seq2: B6Ng01-280E23.b_47_717 (reverse)

seq1  CATCGTGAGAAATAATGGTAGTTGTCTTCTCCATCAGACCTTTTTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGAGAAATAATGGTAGTTGTCTTCTCCATCAGACCTTTTTTATTT  50

seq1  CAAATTTCAGAATCGGGGTATTGTTGGATTTACAGAAAAACATTGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCAGAATCGGGGTATTGTTGGATTTACAGAAAAACATTGGAAAG  100

seq1  TTCCTTGCGCCCCAGCTTTGTAGGTCTTTGTTAGAAGTCACCAGAAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCGCCCCAGCTTTGTAGGTCTTTGTTAGAAGTCACCAGAAAATC  150

seq1  ATCCGAGGAGCTCGAACTTTTCTGGGTTTTTAAATGTGAATTGTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAGGAGCTCGAACTTTTCTGGGTTTTTAAATGTGAATTGTATTTCT  200

seq1  CTTAGGGACAGGGAGCTACTTACCTTTTCCTGCTGTCTTTGAGCCACCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGACAGGGAGCTACTTACCTTTTCCTGCTGTCTTTGAGCCACCGT  250

seq1  TAGTAGTTAGTGTTTTCTGAAAACTCTGCTCTACACCCCAGCTCCCCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTTAGTGTTTTCTGAAAACTCTGCTCTACACCCCAGCTCCCCGGA  300

seq1  GGTAGAGTGGACTCTCTACCCCAGCCTTCCACCATCTGAACCTGACAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTGGACTCTCTACCCCAGCCTTCCACCATCTGAACCTGACAACC  350

seq1  TTCCAGGCTGAAGCCTGTCTACTTTTCTTCCGTATCTTCCTAGCCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCTGAAGCCTGTCTACTTTTCTTCCGTATCTTCCTAGCCTGCAG  400

seq1  CCACCAACAAGCCTCTCTGTTTGGAGGGCATGTGGGAACCCCATCTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACAAGCCTCTCTGTTTGGAGGGCATGTGGGAACCCCATCTTCTA  450

seq1  ATGGCAGTTTCTTCTTCCTGGGATACTTTTCCTGACTTTGGGGGTGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTTTCTTCTTCCTGGGATACTTTTCCTGACTTTGGGGGTGCCTT  500

seq1  TCCCTTGGTATGGCAATACCGAATTAGACAGCCCCTTGCTGACTCTTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGTATGGCAATACCGAATTAGACAGCCCCTTGCTGACTCTTACC  550

seq1  AAAACATCTACCTGTCATTGTACATTTTGCTGTGATTGTCCTTTCCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCTACCTGTCATTGTACATTTTGCTGTGATTGTCCTTTCCACTC  600

seq1  CACTGCCCCATGACAGTCAGACGTGGGCCGATTGCTGGATGTCTCCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCCATGACAGTCAGACGTGGGCCGATTGCTGGATGTCTCCAGCA  650

seq1  TCCAGGAAGCTGAATGAATTC  671
      |||||||||||||||||||||
seq2  TCCAGGAAGCTGAATGAATTC  671

seq1: chr11_33406539_33407441
seq2: B6Ng01-280E23.g_65_965

seq1  GAATTCAATGCCATCGTGGGCTACATACAAAATTTCTAACAAAATTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCCATCGTGGGCTACATACAAAATTTCTAACAAAATTAGCA  50

seq1  AAAGTCTTCTCTGACAGGTGGGAGGCAGTGGCCCCCTTCCTGTCACGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTCTCTGACAGGTGGGAGGCAGTGGCCCCCTTCCTGTCACGTTG  100

seq1  AACTTTCCCCAAACTGCATAGGAACATAAGGATTATTCATGAAGCAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCCCAAACTGCATAGGAACATAAGGATTATTCATGAAGCAGGAC  150

seq1  GTTCCTTCTATCAACCCACCAACACATGGGGACACGTGAGTGCCTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCTATCAACCCACCAACACATGGGGACACGTGAGTGCCTGCCTG  200

seq1  GGACTCGTGGAGCACTATGAAATGTCAGGGTAAAATACAGAGCCCCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCGTGGAGCACTATGAAATGTCAGGGTAAAATACAGAGCCCCAAAC  250

seq1  ACCAAATGTTCTTGAAAATGTTACCGTCCCTAAAGTGCCATTTGCACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGTTCTTGAAAATGTTACCGTCCCTAAAGTGCCATTTGCACCCC  300

seq1  TCACCAAACTCCTTGCAAACGCTCGGGACCATGGAAGTTGGCCATGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAACTCCTTGCAAACGCTCGGGACCATGGAAGTTGGCCATGCTTG  350

seq1  TGATGGTCATTCTCACCAGTCTCTCCAAAACCCAGCCAAATTCTCTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTCATTCTCACCAGTCTCTCCAAAACCCAGCCAAATTCTCTGCAA  400

seq1  AGGGAAAGGGGCTTCAGATGCAAAAAGATACAGGGGAGAAGGCCATAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGGGCTTCAGATGCAAAAAGATACAGGGGAGAAGGCCATAAGA  450

seq1  AGACAGGCAGAGTCCGGGAGGCCATATCTAACACCAAAAAGTTCTAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCAGAGTCCGGGAGGCCATATCTAACACCAAAAAGTTCTAAAGC  500

seq1  TGCCAAAAACTCTGAGAAGCTAGGCCAAAGGCCTCCAGATGGAAGCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAAACTCTGAGAAGCTAGGCCAAAGGCCTCCAGATGGAAGCAAGC  550

seq1  CATCTGCCCTCTGTCTCAGCCTTCTGGCCTTCATTCAGAACTGAGAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCCTCTGTCTCAGCCTTCTGGCCTTCATTCAGAACTGAGAACAA  600

seq1  ATTGGAGTTTTAAGCCACCCCAGTTGTGGCAATGTTACAAAAGACCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGTTTTAAGCCACCCCAGTTGTGGCAATGTTACAAAAGACCTAGA  650

seq1  AAACTAATATTTAAAAAAGATAAATGATGGGCTGGAGAGATGGCTCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATATTTAAAAAAGATAAATGATGGGCTGGAGAGATGGCTCAGTG  700

seq1  GTTAAGAGCACTTACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCACTTACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCA  750

seq1  ACCACACCGTGGCTCACAACCACCATCTGTAATGGGATCCGATTCCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCGTGGCTCACAACCACCATCTGTAATGGGATCCGATTCCTTCT  800

seq1  TCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATCATATATATACATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATCATATATATACATAT  850

seq1  ATATGTGTGTGTGTATATATGTGTACGTGTGTGTGTGTGTGTGTGTGTGT  900
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  ATATGTGTGTGTGTATATATGTGTACGTGTGTGTGTGTGT-TGTGTG-GT  898

seq1  GTG  903
      |||
seq2  GTG  901