BAC Information

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BAC

Clone NameB6Ng01-280J04
Chromosome11 (Build37)
Map Location 93,980,770 - 94,105,938
singlet/doubletdoublet
Overlap geneSpag9, LOC100039440, Tob1, Wfikkn2
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, LOC100039431
Downstream gene3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280J04.bB6Ng01-280J04.g
ACCGA080266GA080267
length1,134856
definitionB6Ng01-280J04.b B6Ng01-280J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,980,770 - 93,981,902)(94,105,083 - 94,105,938)
sequence
gaattcagcctggaaaatagacttggtttttaagcagacgctaattttaa
tagtgaatatgttgttttaaaaaagaaagcatggtagtaaatgtttttaa
atctcaccgccctgggaggcagagacagatggagcctggtctgagtagtg
agttccaggacaccagaggtacaaagtgaaacgctctctcaaaaaaaaac
aaaaacaccttgaatttcatcttgttcgtgttcttattcactttctgtaa
tgttttagcaataatgtattcagaagtcccatacttgtaagggcgtggct
tgaattacaggatatagagatcctgggaaacaagatagtaacactcttca
aaatagcttaacaggcaagcaaccagcaacctttgtctctgccgcatagt
cttcaccactgcagcttgctgttgttgttttttcaaataaggtctccggt
tgtgtggccctgctggcttgcaattgactctctagaccaggctagcctag
aacccaccgaagtttgcccacctttgcctgagtgccatgattaagggtgt
actctacaacatcattgtatttctaaaatataagagccaaacttggagct
agaactatggcttagtggttaagaaccctagatgttcttccagaggacgc
tgttctatccccagtacacacttagaggtttattccaattgtatgggatg
ttgataccttcttctggctttcttgggcactgcatatacatggttcatag
atattcaggcaaaaatactcatatacataaaataaaaataactaaacctt
aaaaaacaaaaacagctgggggcttgagagaaaactcagtggttaagagc
actgtctgcttttgcaggggtcctgagttcaactcccagcactacatagt
gactcacaaccatctgtaatggatctgctgtccttttctgtctgatgcag
catagatgcaaatagagtgctcatatacataaataaatatttttttaaaa
tgcagctggtgcgatggtggttatataccttgatcctaaggcagagacaa
gcagatctgtatgagtcttagttaagctggtctacaaagtgagttctaga
acagccagggctgtttaaacatgaagaaaacctt
gaattcaaagcagccggcatcgcctgctgtctggtttcattactggaaat
ggcctcctctgagggaggtttgttctgataacttagcagatcaagacctg
acacccttcattagcgctttgacgttgaaggagaagactgatcctagaag
caggcagtgggaaggaattggctcagagggacaaaagccagcacctcccc
gtgctaggaagaggaagagactataggagatgctcttgcaggtgattttt
acggtcttcttggatggggagtcatggttatcaggagagcagctgggggc
cttgaacccctttcagccacttccctgtcttctacccactgtggctcagg
ctaccctctaatccttgtttggcttatccttaaaaaaggcacctctctct
ttcaagagttccttttctcatcaccctaagcatctaatgacgaaatcaga
taccctcaatctattgggatagaaagggcttctaacctcctggctactta
caggtctcttcccaggcctcccacaagtacaacccctgactttcaagaac
ttcctaaccattctgtaaaaacaaaacaaaacaaaacaaaacaaaaccga
ctttaggctgtaccttgatagctgttctagcgaacggatgggggaggggt
ggcttcaaaaggccctgcccacacccagcaagctgctgcccttgcctcct
atgttaacggggctgtgtgacacagggtgagttgcttggcttcactgtgc
atccatcctttgcttaagtccaaactggaggtgcagcttgctgtgaggat
taaacagaatgatgcattagggggttgggagcgtgtaaggattatgatat
gattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_93980770_93981902
seq2: B6Ng01-280J04.b_46_1179

seq1  GAATTCAGCCTGGAAAATAGACTTGGTTTTTAAGCAGACGCTAATTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTGGAAAATAGACTTGGTTTTTAAGCAGACGCTAATTTTAA  50

seq1  TAGTGAATATGTTGTTTTAAAAAAGAAAGCATGGTAGTAAATGTTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATATGTTGTTTTAAAAAAGAAAGCATGGTAGTAAATGTTTTTAA  100

seq1  ATCTCACCGCCCTGGGAGGCAGAGACAGATGGAGCCTGGTCTGAGTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCGCCCTGGGAGGCAGAGACAGATGGAGCCTGGTCTGAGTAGTG  150

seq1  AGTTCCAGGACACCAGAGGTACAAAGTGAAACGCTCTCTCAAAAAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACACCAGAGGTACAAAGTGAAACGCTCTCTCAAAAAAAAAC  200

seq1  AAAAACACCTTGAATTTCATCTTGTTCGTGTTCTTATTCACTTTCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACCTTGAATTTCATCTTGTTCGTGTTCTTATTCACTTTCTGTAA  250

seq1  TGTTTTAGCAATAATGTATTCAGAAGTCCCATACTTGTAAGGGCGTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGCAATAATGTATTCAGAAGTCCCATACTTGTAAGGGCGTGGCT  300

seq1  TGAATTACAGGATATAGAGATCCTGGGAAACAAGATAGTAACACTCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTACAGGATATAGAGATCCTGGGAAACAAGATAGTAACACTCTTCA  350

seq1  AAATAGCTTAACAGGCAAGCAACCAGCAACCTTTGTCTCTGCCGCATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTTAACAGGCAAGCAACCAGCAACCTTTGTCTCTGCCGCATAGT  400

seq1  CTTCACCACTGCAGCTTGCTGTTGTTGTTTTTTCAAATAAGGTCTCCGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCACTGCAGCTTGCTGTTGTTGTTTTTTCAAATAAGGTCTCCGGT  450

seq1  TGTGTGGCCCTGCTGGCTTGCAATTGACTCTCTAGACCAGGCTAGCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCCCTGCTGGCTTGCAATTGACTCTCTAGACCAGGCTAGCCTAG  500

seq1  AACCCACCGAAGTTTGCCCACCTTTGCCTGAGTGCCATGATTAAGGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCGAAGTTTGCCCACCTTTGCCTGAGTGCCATGATTAAGGGTGT  550

seq1  ACTCTACAACATCATTGTATTTCTAAAATATAAGAGCCAAACTTGGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACAACATCATTGTATTTCTAAAATATAAGAGCCAAACTTGGAGCT  600

seq1  AGAACTATGGCTTAGTGGTTAAGAACCCTAGATGTTCTTCCAGAGGACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATGGCTTAGTGGTTAAGAACCCTAGATGTTCTTCCAGAGGACGC  650

seq1  TGTTCTATCCCCAGTACACACTTAGAGGTTTATTCCAATTGTATGGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATCCCCAGTACACACTTAGAGGTTTATTCCAATTGTATGGGATG  700

seq1  TTGATACCTTCTTCTGGCTTTCTTGGGCACTGCATATACATGGTTCATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACCTTCTTCTGGCTTTCTTGGGCACTGCATATACATGGTTCATAG  750

seq1  ATATTCAGGCAAAAATACTCATATACATAAAATAAAAATAACTAAACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGGCAAAAATACTCATATACATAAAATAAAAATAACTAAACCTT  800

seq1  AAAAAACAAAAACAGCTGGGGGCTTGAGAGAAAACTCAGTGGTTAAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAACAGCTGGGGGCTTGAGAGAAAACTCAGTGGTTAAGAGC  850

seq1  ACTGTCTGCTTTTGCAGGGGTCCTGAGTTCAACTCCCAGCAACTACATAG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTGTCTGCTTTTGCAGGGGTCCTGAGTTCAACTCCCAGC-ACTACATAG  899

seq1  TGACTCACAACCATCTGTAATGGGATCTGCTGTCCTTTTCTGTCTGATGC  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGACTCACAACCATCTGTAAT-GGATCTGCTGTCCTTTTCTGTCTGATGC  948

seq1  AGGCATAGATGCAAATAGAGTGCTCATATACATAAATAAATAATTTTTTT  1000
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  A-GCATAGATGCAAATAGAGTGCTCATATACATAAATAAAT-ATTTTTTT  996

seq1  AAAATGCAGCT-GTGCGATGGTGG-TATATACCTTTGATCCT-AGGCAGA  1047
      ||||||||||| |||||||||||| |||||||| |||||||| |||||||
seq2  AAAATGCAGCTGGTGCGATGGTGGTTATATACC-TTGATCCTAAGGCAGA  1045

seq1  GACAAGCAGATCTGTATGAGTTCTAGGTTAGCCTGGTCTACAAAGTGAGT  1097
      |||||||||||||||||||| |||  ||||  ||||||||||||||||||
seq2  GACAAGCAGATCTGTATGAG-TCTTAGTTAAGCTGGTCTACAAAGTGAGT  1094

seq1  TCTAGAACAGCCAGGGCTG-TTAAACA-GA--GAAACCTT  1133
      ||||||||||||||||||| ||||||| ||   |||||||
seq2  TCTAGAACAGCCAGGGCTGTTTAAACATGAAGAAAACCTT  1134

seq1: chr11_94105083_94105938
seq2: B6Ng01-280J04.g_69_924 (reverse)

seq1  CCAATCATATCATAATCCTTACACGCTCCCAACCCCCTAATGCATCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATATCATAATCCTTACACGCTCCCAACCCCCTAATGCATCATTC  50

seq1  TGTTTAATCCTCACAGCAAGCTGCACCTCCAGTTTGGACTTAAGCAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATCCTCACAGCAAGCTGCACCTCCAGTTTGGACTTAAGCAAAGG  100

seq1  ATGGATGCACAGTGAAGCCAAGCAACTCACCCTGTGTCACACAGCCCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGCACAGTGAAGCCAAGCAACTCACCCTGTGTCACACAGCCCCGT  150

seq1  TAACATAGGAGGCAAGGGCAGCAGCTTGCTGGGTGTGGGCAGGGCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGGAGGCAAGGGCAGCAGCTTGCTGGGTGTGGGCAGGGCCTTTT  200

seq1  GAAGCCACCCCTCCCCCATCCGTTCGCTAGAACAGCTATCAAGGTACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACCCCTCCCCCATCCGTTCGCTAGAACAGCTATCAAGGTACAGC  250

seq1  CTAAAGTCGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTACAGAATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTCGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTACAGAATGGT  300

seq1  TAGGAAGTTCTTGAAAGTCAGGGGTTGTACTTGTGGGAGGCCTGGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTTCTTGAAAGTCAGGGGTTGTACTTGTGGGAGGCCTGGGAAGA  350

seq1  GACCTGTAAGTAGCCAGGAGGTTAGAAGCCCTTTCTATCCCAATAGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTAAGTAGCCAGGAGGTTAGAAGCCCTTTCTATCCCAATAGATTG  400

seq1  AGGGTATCTGATTTCGTCATTAGATGCTTAGGGTGATGAGAAAAGGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATCTGATTTCGTCATTAGATGCTTAGGGTGATGAGAAAAGGAACT  450

seq1  CTTGAAAGAGAGAGGTGCCTTTTTTAAGGATAAGCCAAACAAGGATTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGAGAGAGGTGCCTTTTTTAAGGATAAGCCAAACAAGGATTAGA  500

seq1  GGGTAGCCTGAGCCACAGTGGGTAGAAGACAGGGAAGTGGCTGAAAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCCTGAGCCACAGTGGGTAGAAGACAGGGAAGTGGCTGAAAGGGG  550

seq1  TTCAAGGCCCCCAGCTGCTCTCCTGATAACCATGACTCCCCATCCAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCCCCCAGCTGCTCTCCTGATAACCATGACTCCCCATCCAAGAA  600

seq1  GACCGTAAAAATCACCTGCAAGAGCATCTCCTATAGTCTCTTCCTCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTAAAAATCACCTGCAAGAGCATCTCCTATAGTCTCTTCCTCTTCC  650

seq1  TAGCACGGGGAGGTGCTGGCTTTTGTCCCTCTGAGCCAATTCCTTCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACGGGGAGGTGCTGGCTTTTGTCCCTCTGAGCCAATTCCTTCCCAC  700

seq1  TGCCTGCTTCTAGGATCAGTCTTCTCCTTCAACGTCAAAGCGCTAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTTCTAGGATCAGTCTTCTCCTTCAACGTCAAAGCGCTAATGAA  750

seq1  GGGTGTCAGGTCTTGATCTGCTAAGTTATCAGAACAAACCTCCCTCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCAGGTCTTGATCTGCTAAGTTATCAGAACAAACCTCCCTCAGAG  800

seq1  GAGGCCATTTCCAGTAATGAAACCAGACAGCAGGCGATGCCGGCTGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATTTCCAGTAATGAAACCAGACAGCAGGCGATGCCGGCTGCTTT  850

seq1  GAATTC  856
      ||||||
seq2  GAATTC  856