BAC Information

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BAC

Clone NameB6Ng01-282K08
Chromosome11 (Build37)
Map Location 42,017,258 - 42,206,014
singlet/doubletdoublet
Overlap geneGabra6
Upstream geneLOC100039285, Hspd1, LOC100039292, Gabrg2, Gabra1
Downstream geneGabrb2, Atp10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282K08.bB6Ng01-282K08.g
ACCGA081808GA081809
length9601,155
definitionB6Ng01-282K08.b B6Ng01-282K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,205,055 - 42,206,014)(42,017,258 - 42,018,421)
sequence
gaattccacaaagaggcactgctatttgaaggttgtgtagttgagagatt
ttctaaattagtctcatgttcatactgtaccaaagttgatcaaaatggat
tcataaaatgatagaagtgaaaaaagaccactaaatcttactattttaag
ttcttgtatacttttatatttgcatggatcccatgtttgaagcctttaca
caggaacagtttgtgaaaaatactaacaacgatgtcaaatgaaatgctct
aagatatttctggctggcagaacatcagatccttacaaatcattaaaata
taatcattagactttatgatcattttcagaggaaattcatggagaacatt
atgacaaatatatgcatatataacattatacagaaaaagcatctgagtgt
atgaaataacatagtacctatggcatagaggattctccatggaaattaga
atgttttatgtatagtgaacatacgcagcatcaaattttagactgttaat
ctaataaattattagtagataatataaaaataagataagttagtatttgc
caacctgagagattatttcagcttttcttggtgcagacattttatatgga
tggagtatgctatatagaattcaccctactgcctccagaaatttgagttt
taagaaaaatatcagcttaatatgtctttatgtatacaactgaaaatacc
taagctgatcaattttaaaaggattacaagattgaatatagaaacttagt
cttgtctctctcccttgcaaatcatatatatatatatatatatatatata
tatatatatatatatatatacatacacttttggttattatctttaaattg
tcaagtataggggtccaactactctctattttctcctatttgtggatacc
tttgtgagggaaaaagctgagaggagagatgtaaggagagagtgaagggt
agagagagtg

gaattccataaaaataatggatgtggaaaagcaacaataaacagtttcaa
tattaggaagatgtagacccatatttctcaatcttggtttattacatatg
gagaaaaagagattgtaataaaaatatcatggaacttaattattaaagca
ttcagaaaacaattaaaaaatatatatgggtatgctatcccatgtagaaa
catcccaatgagagctttatagaattcataggaccagtagaatatcatct
aacttaaaataacaatatgcagaaaatggagattctcaggtaacatttaa
tcaaatggctgtacgtcataaatagggtagccagaatcctcgaacagcca
aataacatttaaaaatcaaaaagtaatgcgtaagctaactactgctctct
gatgccagcttgaaagtttttactaagtagtgcacctctggaccacttac
ttttagggaagcgctctgtgctggagctcagctttgattctttctacaga
acagaagtctgtgaactaggacacatttacttttgacgtcctggtggaag
gcatcactctgatttgtttttgtgttttgtattttttaagtaacacaaac
cagctaaagaaacaccatttgaaccaatgtccgagatcaaatactgaaag
gtcatttgtttagaaacttaatgttacataattcaggatttttcacatca
gatagaacattccatggcattatttatcttaaggaaagaagaaacgagaa
catatgattccaaatagtaaaatccttcatcatgttcactagaggctctg
ctggttaaaagattaaagagtcttccttaggtttctagaaatacttagta
acccagtttctcaagatcccattatatcacagcaggggtgtgattctgag
agcttggtttaggaaaacttagcctccagagaaagaagagcccaatctac
tacaaggaagtgtccatatattttttttcaaattcaccttagtgattaaa
taaatcaaagagttttttttttctacttttcctctataagatatttttag
aagggccattcaaataccatgccctcagactcatgtgatggctctgtggt
aatccagatatgacttcttgtgagatatgactgaatcaaagttaggctaa
gagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42205055_42206014
seq2: B6Ng01-282K08.b_49_1008 (reverse)

seq1  CACTCTCTCTACCCTTCACTCTCTCCCTTACATCTCTCCTCTCAGCTTTT  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACTCTCTCTACCCTTCACTCTCT-CCTTACATCTCTCCTCTCAGCTTTT  49

seq1  TCCCTCAC-AAGGTATCCACAAATAGGAGAAAATAGAGAGTAGTTGGACC  99
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCACAAAGGTATCCACAAATAGGAGAAAATAGAGAGTAGTTGGACC  99

seq1  CCTATACTTGACAATTTAAAGATAATAACCAAAAGTGTATGTATATATAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACTTGACAATTTAAAGATAATAACCAAAAGTGTATGTATATATAT  149

seq1  ATATATATATATATATATATATATATATATATATATATGATTTGCAAGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATGATTTGCAAGGG  199

seq1  AGAGAGACAAGACTAAGTTTCTATATTCAATCTTGTAATCCTTTTAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAAGACTAAGTTTCTATATTCAATCTTGTAATCCTTTTAAAAT  249

seq1  TGATCAGCTTAGGTATTTTCAGTTGTATACATAAAGACATATTAAGCTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGCTTAGGTATTTTCAGTTGTATACATAAAGACATATTAAGCTGA  299

seq1  TATTTTTCTTAAAACTCAAATTTCTGGAGGCAGTAGGGTGAATTCTATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTTAAAACTCAAATTTCTGGAGGCAGTAGGGTGAATTCTATAT  349

seq1  AGCATACTCCATCCATATAAAATGTCTGCACCAAGAAAAGCTGAAATAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACTCCATCCATATAAAATGTCTGCACCAAGAAAAGCTGAAATAAT  399

seq1  CTCTCAGGTTGGCAAATACTAACTTATCTTATTTTTATATTATCTACTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGTTGGCAAATACTAACTTATCTTATTTTTATATTATCTACTAA  449

seq1  TAATTTATTAGATTAACAGTCTAAAATTTGATGCTGCGTATGTTCACTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATTAGATTAACAGTCTAAAATTTGATGCTGCGTATGTTCACTAT  499

seq1  ACATAAAACATTCTAATTTCCATGGAGAATCCTCTATGCCATAGGTACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACATTCTAATTTCCATGGAGAATCCTCTATGCCATAGGTACTA  549

seq1  TGTTATTTCATACACTCAGATGCTTTTTCTGTATAATGTTATATATGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTCATACACTCAGATGCTTTTTCTGTATAATGTTATATATGCAT  599

seq1  ATATTTGTCATAATGTTCTCCATGAATTTCCTCTGAAAATGATCATAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTCATAATGTTCTCCATGAATTTCCTCTGAAAATGATCATAAAG  649

seq1  TCTAATGATTATATTTTAATGATTTGTAAGGATCTGATGTTCTGCCAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGATTATATTTTAATGATTTGTAAGGATCTGATGTTCTGCCAGCC  699

seq1  AGAAATATCTTAGAGCATTTCATTTGACATCGTTGTTAGTATTTTTCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATCTTAGAGCATTTCATTTGACATCGTTGTTAGTATTTTTCACA  749

seq1  AACTGTTCCTGTGTAAAGGCTTCAAACATGGGATCCATGCAAATATAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCCTGTGTAAAGGCTTCAAACATGGGATCCATGCAAATATAAAA  799

seq1  GTATACAAGAACTTAAAATAGTAAGATTTAGTGGTCTTTTTTCACTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAAGAACTTAAAATAGTAAGATTTAGTGGTCTTTTTTCACTTCTA  849

seq1  TCATTTTATGAATCCATTTTGATCAACTTTGGTACAGTATGAACATGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATGAATCCATTTTGATCAACTTTGGTACAGTATGAACATGAGA  899

seq1  CTAATTTAGAAAATCTCTCAACTACACAACCTTCAAATAGCAGTGCCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAGAAAATCTCTCAACTACACAACCTTCAAATAGCAGTGCCTCT  949

seq1  TTGTGGAATTC  960
      |||||||||||
seq2  TTGTGGAATTC  960


seq1: chr11_42017258_42018421
seq2: B6Ng01-282K08.g_67_1221

seq1  GAATTCCATAAAAATAATGGATGTGGAAAAGCAACAATAAACAGTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAAATAATGGATGTGGAAAAGCAACAATAAACAGTTTCAA  50

seq1  TATTAGGAAGATGTAGACCCATATTTCTCAATCTTGGTTTATTACATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGAAGATGTAGACCCATATTTCTCAATCTTGGTTTATTACATATG  100

seq1  GAGAAAAAGAGATTGTAATAAAAATATCATGGAACTTAATTATTAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGAGATTGTAATAAAAATATCATGGAACTTAATTATTAAAGCA  150

seq1  TTCAGAAAACAATTAAAAAATATATATGGGTATGCTATCCCATGTAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAACAATTAAAAAATATATATGGGTATGCTATCCCATGTAGAAA  200

seq1  CATCCCAATGAGAGCTTTATAGAATTCATAGGACCAGTAGAATATCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAATGAGAGCTTTATAGAATTCATAGGACCAGTAGAATATCATCT  250

seq1  AACTTAAAATAACAATATGCAGAAAATGGAGATTCTCAGGTAACATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAATAACAATATGCAGAAAATGGAGATTCTCAGGTAACATTTAA  300

seq1  TCAAATGGCTGTACGTCATAAATAGGGTAGCCAGAATCCTCGAACAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGCTGTACGTCATAAATAGGGTAGCCAGAATCCTCGAACAGCCA  350

seq1  AATAACATTTAAAAATCAAAAAGTAATGCGTAAGCTAACTACTGCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATTTAAAAATCAAAAAGTAATGCGTAAGCTAACTACTGCTCTCT  400

seq1  GATGCCAGCTTGAAAGTTTTTACTAAGTAGTGCACCTCTGGACCACTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAGCTTGAAAGTTTTTACTAAGTAGTGCACCTCTGGACCACTTAC  450

seq1  TTTTAGGGAAGCGCTCTGTGCTGGAGCTCAGCTTTGATTCTTTCTACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGGAAGCGCTCTGTGCTGGAGCTCAGCTTTGATTCTTTCTACAGA  500

seq1  ACAGAAGTCTGTGAACTAGGACACATTTACTTTTGACGTCCTGGTGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTCTGTGAACTAGGACACATTTACTTTTGACGTCCTGGTGGAAG  550

seq1  GCATCACTCTGATTTGTTTTTGTGTTTTGTATTTTTTAAGTAACACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACTCTGATTTGTTTTTGTGTTTTGTATTTTTTAAGTAACACAAAC  600

seq1  CAGCTAAAGAAACACCATTTGAACCAATGTCCGAGATCAAATACTGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAAGAAACACCATTTGAACCAATGTCCGAGATCAAATACTGAAAG  650

seq1  GTCATTTGTTTAGAAACTTAATGTTACATAATTCAGGATTTTTCACATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGTTTAGAAACTTAATGTTACATAATTCAGGATTTTTCACATCA  700

seq1  GATAGAACATTCCATGGCATTATTTATCTTAAGGAAAGAAGAAACGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACATTCCATGGCATTATTTATCTTAAGGAAAGAAGAAACGAGAA  750

seq1  CATATGATTCCAAATAGTAAAATCCTTCATCATGTTCACTAGAGGCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGATTCCAAATAGTAAAATCCTTCATCATGTTCACTAGAGGCTCTG  800

seq1  CTGGTTAAAAGATTAAAGAGTCTTCCTTAGGTTTCTAGAAATACTTAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAAAAGATTAAAGAGTCTTCCTTAGGTTTCTAGAAATACTTAGTA  850

seq1  ACCCAGTTTCTCAAGATCCCATTATATCACAGCA-GGGTGTGATTCTGAG  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCCAGTTTCTCAAGATCCCATTATATCACAGCAGGGGTGTGATTCTGAG  900

seq1  AGCTTGG-TTAGGAAAACTTAGCCTCCAGAGAAAGAAGAG-CCAATCTAC  947
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  AGCTTGGTTTAGGAAAACTTAGCCTCCAGAGAAAGAAGAGCCCAATCTAC  950

seq1  TACAAGGAAGTGTCCATATATTTTTTTCAAATTTCACCTTTAGTGATTAA  997
      |||||||||||||||||||||||||||  || |||||| |||||||||||
seq2  TACAAGGAAGTGTCCATATATTTTTTTTCAAATTCACC-TTAGTGATTAA  999

seq1  ATTAAATCAAAGAGTTTTTTTTTTCTACTTTTCTTCTATAAAGATAATTT  1047
      | ||||||||||||||||||||||||||||||| ||||| ||||| ||||
seq2  A-TAAATCAAAGAGTTTTTTTTTTCTACTTTTCCTCTAT-AAGAT-ATTT  1046

seq1  TTAGA--GGCCATTCAAATACAAATTGCCCTCAGACTCATGTTGATTGGC  1095
      |||||  |||||||||||||| |  |||||||||||||||| ||| ||||
seq2  TTAGAAGGGCCATTCAAATACCA--TGCCCTCAGACTCATG-TGA-TGGC  1092

seq1  TCTGTGGTAATTCAAGATATGACTTCTTGTGGAAGATAATGACTGATTCA  1145
      |||||||||| || |||||||||||||||||  |||| |||||||| |  
seq2  TCTGTGGTAA-TCCAGATATGACTTCTTGTG--AGAT-ATGACTGAAT--  1136

seq1  CAAGGGTAAGCTAAGAGGA  1164
      ||| | || ||||||||||
seq2  CAAAGTTAGGCTAAGAGGA  1155


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