BAC Information

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BAC

Clone NameB6Ng01-283H17
Chromosome11 (Build37)
Map Location 9,625,932 - 9,627,080
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283H17.bB6Ng01-283H17.g
ACCGA082432GA082433
length1,1421,163
definitionB6Ng01-283H17.b B6Ng01-283H17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtttagatatgagcacctttgtggatgaggaacaaaaggcaga
cctgtgattcatcctctaatgatctcaaatataattatactttataaata
ttacattatataattaattgaaaacatatgtcaaatttcttaacatataa
ctctcaagttgatgatgaggctctaaaatctctccaacgcataaaaggat
ctagcagataaaactgtaccttcaaaggccaaaaataattgataaagtta
ataacattagcaaatacatcaggttaccaaggggtctattgtgtcgtgtt
tttgacatgtttttcctgaacgtcttatagagtcaacatcacatgccaca
ggaaacagtgtcctgcttatttctcactggcccttgatttcctgatggtc
taaaccagctggattaaattgctaaaatgaaatactggcattaacacatg
catccatgcaaacacacatatgcacatacctgtgtattagttcattgtta
aattttctcagatgagaagacttcttgaatgggttagaattcccatttat
caccctacccccaccaccaaagcaggtcctgaggtccatacacctaaaga
ggtatagagaaagcctcacaaagaaccaagtaaatgctgctttctagatt
tcagacaggccttgagaactagctgctaatgaatatggggcattggagcc
tttccttgctgcattttgcttcagtgctctgaacagatcatctgtgcatg
gtcaattttgagtcagtgtatgacagatgctgatatgcatgtgtccatgt
atatggttttggcagaatgttatttttttctgcacaataagatcactagg
aagctctctttttggcagtcttgttcatgcctttgtgagagcagcagaga
gaactttgcagggtgtttgtttaacagtacatttctgtcagcttagttct
gttgaatgcttagagccacctgcagcagatacccttgcctgtctgaggct
ctggatgctttctatttaatcctgtctgtctggaagacaaatattttttc
tggaggtttgaacagggaaagaccttgaagctgttttgaacttaaccttt
tctaccaatgtatatggaagatgtatggttaggccgatgctt
gaattcacgaccacccaggagtcataacgtcacttggaggtaaggtgttg
tgtctgtcttatctgtatttctgtctgtctgaattctggtgatcacagtt
tcggttttgccgatgtttgtttgaatcgcactccgggcgggagtgcggag
tggataagaatagacgtattccagtgtccactgtccgttcagagacatcc
caggaagacaggggtagggccagggacgcctggtggacccccatttggag
actgggggtaccaactctccccccggcaatctgaggcggcaagggccgtg
gccggtcgacagtgtcttggttcttttctggtcgactcggaacaggacac
agattttctctatttcagtacctgtcgtttgtcttgtctttgtcatttgt
attatagatttagaaatgggacagcctgtgacgacgcccctgacgctaac
ctttgaccactggacagacgttaagactagggctcataatctttctgttg
aagttaaaaaaaagaccttggcagacgttctgttctttggagtggcccac
cttcagagtggggtggctgcgagacgggactcttaaccttcccatcattt
atgctgttaagcgcattgtctttcagaaccctggaggccatccagatcag
gtcccctatatcctggtctggcaggatctggtccaaaatccaccaccttg
ggtcaaaccttggaccatgggacacaagacggcgatagtggccgtggcgg
caaaactgaaagtcccagtcacggccagcggtccacctgcccctccacat
atttatcctgaaactgaggaggtctctcttttagatctccaaccaccccc
ttaccctacccctgcccttcaacctcttccttccatcggcgccccccagc
ctacaaaagggccagtgatagtgggcccggcagcccggcacccggagccg
ccgggccgcagtctggatggagcccgggctgagctgtcctcggtgacgct
ctgctactcgggcatattgtcggcgagccaccccgtgcctatgacttgcc
cctctcagtactgccgttcttcctcggctgacctctacacctggaactac
accttccattcgaaattcgtctggttcagtgacctcctttgagttcctta
gtgttcttctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9625932_9627080
seq2: B6Ng01-283H17.b_43_1184

seq1  GAATTCTGTTTAGATATGAGCACCTTTGTGGATGAGGAACAAAAGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAGATATGAGCACCTTTGTGGATGAGGAACAAAAGGCAGA  50

seq1  CCTGTGATTCATCCTCTAATGATCTCAAATATAATTATACTTTATAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATTCATCCTCTAATGATCTCAAATATAATTATACTTTATAAATA  100

seq1  TTACATTATATAATTAATTGAAAACATATGTCAAATTTCTTAACATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTATATAATTAATTGAAAACATATGTCAAATTTCTTAACATATAA  150

seq1  CTCTCAAGTTGATGATGAGGCTCTAAAATCTCTCCAACGCATAAAAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAGTTGATGATGAGGCTCTAAAATCTCTCCAACGCATAAAAGGAT  200

seq1  CTAGCAGATAAAACTGTACCTTCAAAGGCCAAAAATAATTGATAAAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGATAAAACTGTACCTTCAAAGGCCAAAAATAATTGATAAAGTTA  250

seq1  ATAACATTAGCAAATACATCAGGTTACCAAGGGGTCTATTGTGTCGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTAGCAAATACATCAGGTTACCAAGGGGTCTATTGTGTCGTGTT  300

seq1  TTTGACATGTTTTTCCTGAACGTCTTATAGAGTCAACATCACATGCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATGTTTTTCCTGAACGTCTTATAGAGTCAACATCACATGCCACA  350

seq1  GGAAACAGTGTCCTGCTTATTTCTCACTGGCCCTTGATTTCCTGATGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGTGTCCTGCTTATTTCTCACTGGCCCTTGATTTCCTGATGGTC  400

seq1  TAAACCAGCTGGATTAAATTGCTAAAATGAAATACTGGCATTAACACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGCTGGATTAAATTGCTAAAATGAAATACTGGCATTAACACATG  450

seq1  CATCCATGCAAACACACATATGCACATACCTGTGTATTAGTTCATTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGCAAACACACATATGCACATACCTGTGTATTAGTTCATTGTTA  500

seq1  AATTTTCTCAGATGAGAAGACTTCTTGAATGGGTTAGAATTCCCATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTCAGATGAGAAGACTTCTTGAATGGGTTAGAATTCCCATTTAT  550

seq1  CACCCTACCCCCACCACCAAAGCAGGTCCTGAGGTCCATACACCTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTACCCCCACCACCAAAGCAGGTCCTGAGGTCCATACACCTAAAGA  600

seq1  GGTATAGAGAAAGCCTCACAAAGAACCAAGTAAATGCTGCTTTCTAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGAGAAAGCCTCACAAAGAACCAAGTAAATGCTGCTTTCTAGATT  650

seq1  TCAGACAGGCCTTGAGAACTAGCTGCTAATGAATATGGGGCATTGGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGGCCTTGAGAACTAGCTGCTAATGAATATGGGGCATTGGAGCC  700

seq1  TTTCCTTGCTGCATTTTGCTTCAGTGCTCTGAACAGATCATCTGTGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGCTGCATTTTGCTTCAGTGCTCTGAACAGATCATCTGTGCATG  750

seq1  GTCAATTTTGAGTCAGTGTATGACAGATGCTGATATGCATGTGTCCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTTGAGTCAGTGTATGACAGATGCTGATATGCATGTGTCCATGT  800

seq1  ATATGGTTTTGGCAGAATGTTA-TTTTTTCTGCACAATAAGATCACTAGG  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATGGTTTTGGCAGAATGTTATTTTTTTCTGCACAATAAGATCACTAGG  850

seq1  AAGCTCTCTTTTTGGCAGTCTTGTTCATGCCTTTGTGAGAGCAGCAGGAG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGCTCTCTTTTTGGCAGTCTTGTTCATGCCTTTGTGAGAGCAGCA-GAG  899

seq1  AGAACTTTGCAGGGTGTTTGTTTAACAGTACATTTCTGTCAGCTTAGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTGCAGGGTGTTTGTTTAACAGTACATTTCTGTCAGCTTAGTTC  949

seq1  TGTTGAATGCTTAGAGCCACCTGCAGCAGATACCCTTGCCTGTCTGAGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATGCTTAGAGCCACCTGCAGCAGATACCCTTGCCTGTCTGAGGC  999

seq1  TCTGGATGCTTTCTATTTAATCCTGTCTGTCTGGAAAGACAAATA--TTT  1047
      |||||||||||||||||||||||||||||||||| ||||||||||  |||
seq2  TCTGGATGCTTTCTATTTAATCCTGTCTGTCTGG-AAGACAAATATTTTT  1048

seq1  TCTGGAGGTTTTGACAGGGGAAAGACC-TGAGGCTGTTTTTGGACTTAAA  1096
      |||||||||||  ||| |||||||||| ||| |||| ||||| |||||| 
seq2  TCTGGAGGTTTGAACA-GGGAAAGACCTTGAAGCTG-TTTTGAACTTAAC  1096

seq1  C-TTTCTACCAAATGTAATAGGAAGATGTATGGTTAGCAGTTGGCTTGAT  1145
      | |||||||| ||||||   ||||||||||||||||      |||  |||
seq2  CTTTTCTACC-AATGTATATGGAAGATGTATGGTTA------GGC-CGAT  1138

seq1  GCTT  1149
      ||||
seq2  GCTT  1142