BAC Information

Click to search

BAC

Clone NameB6Ng01-283P08
Chromosome11 (Build37)
Map Location 98,712,025 - 98,712,928
singlet/doubletsinglet
Overlap geneRapgefl1
Upstream geneFbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3
Downstream geneWipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283P08.g
ACCGA082783
length905
definitionB6Ng01-283P08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatagagagtacatgggggaaggcctccgtctatgtccttttcgg
ggctaattccttgtcgtcttccagcattcagtggccgagaaagtgaggac
aatccgaaaataccggagccggcccctctgtgagtaccctgggcgcagtg
agcttccgggtaggactgtggcggcagagggatgggagagcaagcgccac
gttcaagtgtgtattttcttatactgctcagttctctgttcttgccttgg
gcgcctgccaacacctgtcccccttcacacccactttgccctgccctgcc
tgacatgcatgtaggggataaaggggggctgggaggctgaccaccacttc
ctttcttcaccccaggcctggacatggaggcatccccacatcacctgcag
accaaggcgtacgtgcgccaattccaggtcatcgacaaccacaaccacct
ctttgagctctcctacaagttggaggctaatagtcagtgagagtgagagg
gcctggctgcccccgcctcggtccttggcacctggcacccaagcactttt
gcacgatgccctcaacagacatcggccaccttctccctggaggcgtttcc
tatcacaaggtggagttgggttggcctaccatgaccataagcctgccatc
ctgctgaggtcctcttaccttgctccttcacacacaagctacgctcctgg
tggctgatctctctgggcaagggacggaagatcacctctctgctctccaa
gggaggtctgttccagagatggggtttctagccctcacctcccatgcagg
aaagaagcacccgctcccagatcacaggtgtgatgggaggcactgtaaac
atcattcgcgggcaaactgttcactgttccctggatatacactaccctag
catta
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_98712025_98712928
seq2: B6Ng01-283P08.g_65_969

seq1  GAATTCATAGAGAGTACATGGGGGAAGGCCTCCGTCTATGTCCTTTTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAGAGTACATGGGGGAAGGCCTCCGTCTATGTCCTTTTCGG  50

seq1  GGCTAATTCCTTGTCGTCTTCCAGCATTCAGTGGCCGAGAAAGTGAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTCCTTGTCGTCTTCCAGCATTCAGTGGCCGAGAAAGTGAGGAC  100

seq1  AATCCGAAAATACCGGAGCCGGCCCCTCTGTGAGTACCCTGGGCGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGAAAATACCGGAGCCGGCCCCTCTGTGAGTACCCTGGGCGCAGTG  150

seq1  AGCTTCCGGGTAGGACTGTGGCGGCAGAGGGATGGGAGAGCAAGCGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCGGGTAGGACTGTGGCGGCAGAGGGATGGGAGAGCAAGCGCCAC  200

seq1  GTTCAAGTGTGTATTTTCTTAGACTGCTCAGTTCTCTGTTCTTGCCTTGG  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTCAAGTGTGTATTTTCTTATACTGCTCAGTTCTCTGTTCTTGCCTTGG  250

seq1  GCGCCTGCCAACACCTGTCCCCCTTCACACCCACTTTGCCCTGCCCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGCCAACACCTGTCCCCCTTCACACCCACTTTGCCCTGCCCTGCC  300

seq1  TGACATGCATGTAGGGGATAAAGGGGGGCTGGGAGGCTGACCACCACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGCATGTAGGGGATAAAGGGGGGCTGGGAGGCTGACCACCACTTC  350

seq1  CTTTCTTCACCCCAGGCCTGGACATGGAGGCATCCCCACATCACCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCACCCCAGGCCTGGACATGGAGGCATCCCCACATCACCTGCAG  400

seq1  ACCAAGGCGTACGTGCGCCAGTTCCAGGTCATCGACAACCAGAACCACCT  450
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  ACCAAGGCGTACGTGCGCCAATTCCAGGTCATCGACAACCACAACCACCT  450

seq1  CTTTGAGCTCTCCTACAAGTTGGAGGCTAATAGTCAGTGAGAGTGAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCTCTCCTACAAGTTGGAGGCTAATAGTCAGTGAGAGTGAGAGG  500

seq1  GCCTGGCTGCCCCCGCCTCGGTCCTTGGCACCTGGCACCCAAGCACTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTGCCCCCGCCTCGGTCCTTGGCACCTGGCACCCAAGCACTTTT  550

seq1  GCACGATGCCCTCAACAGACATCGGCCACCTTCTCCCTGGAGGCGTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGATGCCCTCAACAGACATCGGCCACCTTCTCCCTGGAGGCGTTTCC  600

seq1  TATCACAAGGTGGAGTTGGGTTGGCCTACCAGGACCATAAGCCTGCCATC  650
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATCACAAGGTGGAGTTGGGTTGGCCTACCATGACCATAAGCCTGCCATC  650

seq1  CTGCTGAGGTCCTCTTACCTTGCTCCTTCACACACAAGCTACGCTCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGGTCCTCTTACCTTGCTCCTTCACACACAAGCTACGCTCCTGG  700

seq1  TGGCTGGCCTCTCTGGGCAAGGGACGGAGGAGCACCTCTCTGCTCTCCAA  750
      ||||||  |||||||||||||||||||| || ||||||||||||||||||
seq2  TGGCTGATCTCTCTGGGCAAGGGACGGAAGATCACCTCTCTGCTCTCCAA  750

seq1  GGGAGGTCTGTTCCAGAGATGGGGTTTCTAGCCCTCACCTCCCATGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTCTGTTCCAGAGATGGGGTTTCTAGCCCTCACCTCCCATGCAGG  800

seq1  AAGGAAGCACCCGCTCCCGGATCACAGCTGTGATGGGAGGCACTGGAAGC  850
      || ||||||||||||||| |||||||| ||||||||||||||||| || |
seq2  AAAGAAGCACCCGCTCCCAGATCACAGGTGTGATGGGAGGCACTGTAAAC  850

seq1  CGCCTTCGCGGGC-AACTGTTTCACTGGTCCCTGGATATACAC-CCCCTA  898
        | ||||||||| ||||| ||||||| |||||||||||||||  |||||
seq2  ATCATTCGCGGGCAAACTG-TTCACTGTTCCCTGGATATACACTACCCTA  899

seq1  GGATTA  904
      | ||||
seq2  GCATTA  905