BAC Information

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BAC

Clone NameB6Ng01-284J07
Chromosome11 (Build37)
Map Location 100,180,070 - 100,330,294
singlet/doubletdoublet
Overlap geneEif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11
Upstream geneKrt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491
Downstream geneAcly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284J07.bB6Ng01-284J07.g
ACCGA083246GA083247
length1,103872
definitionB6Ng01-284J07.b B6Ng01-284J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,329,194 - 100,330,294)(100,180,070 - 100,180,940)
sequence
gaattccaggacagccaagggttacatagtaagaccttgtctcaaacaaa
caaaaaattgggagcatacctttaatcccagtgcttaggaggcagggtca
gttggatctctgatttcaaggacaggcagagctacataggagatccagtc
tcaaagccagaaaaaagggtaggcattagatggaaaagtcaagataaatg
caaattgggggaaactagcatataatttataattaaagccatagaataga
ttaagttacttaagagtacacattaaaaatgaataaaggaaagaaggcag
gtaggagagtctgtacagcattaaagaatccggcagagtgaattgagctg
ataccatggaggcctaaaaagggggtggagtctactgtcaaatgatcaat
cattaaaggttggtgatgacatcattgagttaaatgtttccatgaaaaag
gattggatttgaggtagagtgcctacttagttaactctaaaataggagag
gtggaacatgtttttgtgccgaagaaagtgattgtggaagaggagaaact
gatactataagagcagaggaatggacacaggaggtttttaaatcaaggta
gatcagactacatattatagtaagagactgaatgatgcacacctgtgtcc
agcacttggcaggagatctaggtcagtctggactaaaaagtccagagacc
ctttctcatgaatgctaaggattgactctgggctgtggtggctcttgcct
ttaatcataccatttatgagacagcagcaggaggtcttaagttccaggcc
agccaagactacatggagtcttgactgtctcaaaaccatgagtggaatgg
gaaagaaaatatagtgtattttcttactttactgtagacaaattggtgga
aaggtaaaacccctacccacaggattgcttcttttctcagagtaccagac
tggatcctcaggattgggatgggaatgggtataagactgggagaatgaaa
ctgaaaagaagagctattgtcagttgtgtttgcctgtgattttttttttt
ctttttttcagagttagtcctttttgaggagttagcaaggagagactact
tca
gaattcacttgaccttgaactttttcctctggcttccttctcctgagagc
tgggatgtaccaccatacctagaagttggcagtatttttaagttaagaga
ttttatataaagcacccactctttggggagcatttgaataaagtctgaca
cagtagttatcagcctctggttctcctattggcccccacaaacccagtta
catcacacttggctgtctctttttttttttttttttttttttcggttttt
cgagacagggtttctctgtataccttggctgtcctggaactcactctgta
gaccaggctagcctcgaactcggaaatccgcctgtctctgcttcccaagt
gctgggattaaaggtgtgcgcggtggcacttgcctttaatcccaccactc
atggggcaaaagcagaccccatgtggccagcctggtctatagagttccag
cacagccaaaaccctgtcttgaaaaaacaaaaagaaaggttaactgcttt
gaaaaaaatattcacctagactctacaaaggctttacctcacacacaggc
ttgtaggacaaaaggcatcctgtgaggcttggacatttttttcctggggt
ccccactcctacctaagggactacttccttccttagaagaattaatctaa
ataataatttttggttaccaattttaaaacatgctaatccaaatgatacc
ctatataaggtccaaattttgatcacgttattttatgctgattaaatggc
tatatctgtgaatacgtgcagagaagggtaggttgatgggtggctggatc
atcgaattttggagggacccgcacgtaattaccctttaaagcaatcgatc
cctcacccctaagacccatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100329194_100330294
seq2: B6Ng01-284J07.b_45_1147 (reverse)

seq1  TGAAGTAGTCTCTCCTTTCCTTACTCCTCAAAAAGGACTAACTCTGAAAA  50
      ||||||||||||||| || || ||||||||||||||||||||||||||||
seq2  TGAAGTAGTCTCTCC-TTGCTAACTCCTCAAAAAGGACTAACTCTGAAAA  49

seq1  AA--GAAAAAAAAAATCACAGGCAAACACAACTTGACAATAGCTCTTCTT  98
      ||   ||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAGAAAAAAAAAAATCACAGGCAAACACAAC-TGACAATAGCTCTTCTT  98

seq1  TTCAGTTTCATTCTCCCAGTCTTATACCCATT-CCAT-CCAATCCTGAGG  146
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  TTCAGTTTCATTCTCCCAGTCTTATACCCATTCCCATCCCAATCCTGAGG  148

seq1  ATCCAGTCTGGTACTCTGAGAAAAGAAGCAATCCTGTGGGTAGGGGTTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCTGGTACTCTGAGAAAAGAAGCAATCCTGTGGGTAGGGGTTTT  198

seq1  ACCTTTCCACCAATTTGTCTACAGTAAAGTAAGAAAATACACTATATTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCACCAATTTGTCTACAGTAAAGTAAGAAAATACACTATATTTT  248

seq1  CTTTCCCATTCCACTCATGGTTTTGAGACAGTCAAGACTCCATGTAGTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCATTCCACTCATGGTTTTGAGACAGTCAAGACTCCATGTAGTCT  298

seq1  TGGCTGGCCTGGAACTTAAGACCTCCTGCTGCTGTCTCATAAATGGTATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCTGGAACTTAAGACCTCCTGCTGCTGTCTCATAAATGGTATG  348

seq1  ATTAAAGGCAAGAGCCACCACAGCCCAGAGTCAATCCTTAGCATTCATGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCAAGAGCCACCACAGCCCAGAGTCAATCCTTAGCATTCATGA  398

seq1  GAAAGGGTCTCTGGACTTTTTAGTCCAGACTGACCTAGATCTCCTGCCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTCTCTGGACTTTTTAGTCCAGACTGACCTAGATCTCCTGCCAA  448

seq1  GTGCTGGACACAGGTGTGCATCATTCAGTCTCTTACTATAATATGTAGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGACACAGGTGTGCATCATTCAGTCTCTTACTATAATATGTAGTC  498

seq1  TGATCTACCTTGATTTAAAAACCTCCTGTGTCCATTCCTCTGCTCTTATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTACCTTGATTTAAAAACCTCCTGTGTCCATTCCTCTGCTCTTATA  548

seq1  GTATCAGTTTCTCCTCTTCCACAATCACTTTCTTCGGCACAAAAACATGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGTTTCTCCTCTTCCACAATCACTTTCTTCGGCACAAAAACATGT  598

seq1  TCCACCTCTCCTATTTTAGAGTTAACTAAGTAGGCACTCTACCTCAAATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCTCCTATTTTAGAGTTAACTAAGTAGGCACTCTACCTCAAATC  648

seq1  CAATCCTTTTTCATGGAAACATTTAACTCAATGATGTCATCACCAACCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTTTTTCATGGAAACATTTAACTCAATGATGTCATCACCAACCTT  698

seq1  TAATGATTGATCATTTGACAGTAGACTCCACCCCCTTTTTAGGCCTCCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTGATCATTTGACAGTAGACTCCACCCCCTTTTTAGGCCTCCAT  748

seq1  GGTATCAGCTCAATTCACTCTGCCGGATTCTTTAATGCTGTACAGACTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAGCTCAATTCACTCTGCCGGATTCTTTAATGCTGTACAGACTCT  798

seq1  CCTACCTGCCTTCTTTCCTTTATTCATTTTTAATGTGTACTCTTAAGTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTGCCTTCTTTCCTTTATTCATTTTTAATGTGTACTCTTAAGTAA  848

seq1  CTTAATCTATTCTATGGCTTTAATTATAAATTATATGCTAGTTTCCCCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTATTCTATGGCTTTAATTATAAATTATATGCTAGTTTCCCCCA  898

seq1  ATTTGCATTTATCTTGACTTTTCCATCTAATGCCTACCCTTTTTTCTGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTTATCTTGACTTTTCCATCTAATGCCTACCCTTTTTTCTGGC  948

seq1  TTTGAGACTGGATCTCCTATGTAGCTCTGCCTGTCCTTGAAATCAGAGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACTGGATCTCCTATGTAGCTCTGCCTGTCCTTGAAATCAGAGAT  998

seq1  CCAACTGACCCTGCCTCCTAAGCACTGGGATTAAAGGTATGCTCCCAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGACCCTGCCTCCTAAGCACTGGGATTAAAGGTATGCTCCCAATT  1048

seq1  TTTTGTTTGTTTGAGACAAGGTCTTACTATGTAACCCTTGGCTGTCCTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGAGACAAGGTCTTACTATGTAACCCTTGGCTGTCCTGG  1098

seq1  AATTC  1101
      |||||
seq2  AATTC  1103

seq1: chr11_100180070_100180940
seq2: B6Ng01-284J07.g_66_937

seq1  GAATTCACTTGACCTTGAACTTTTTCCTCTGGCTTCCTTCTCCTGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGACCTTGAACTTTTTCCTCTGGCTTCCTTCTCCTGAGAGC  50

seq1  TGGGATGTACCACCATACCTAGAAGTTGGCAGTATTTTTAAGTTAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTACCACCATACCTAGAAGTTGGCAGTATTTTTAAGTTAAGAGA  100

seq1  TTTTATATAAAGCACCCACTCTTTGGGGAGCATTTGAATAAAGTCTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATAAAGCACCCACTCTTTGGGGAGCATTTGAATAAAGTCTGACA  150

seq1  CAGTAGTTATCAGCCTCTGGTTCTCCTATTGGCCCCCACAAACCCAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTATCAGCCTCTGGTTCTCCTATTGGCCCCCACAAACCCAGTTA  200

seq1  CATCACACTTGGCTGTCTCTTTTTTTTTTTTTTTTTTTTTTTCGGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACTTGGCTGTCTCTTTTTTTTTTTTTTTTTTTTTTTCGGTTTTT  250

seq1  CGAGACAGGGTTTCTCTGTATACCTTGGCTGTCCTGGAACTCACTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTATACCTTGGCTGTCCTGGAACTCACTCTGTA  300

seq1  GACCAGGCTAGCCTCGAACTCGGAAATCCGCCTGTCTCTGCTTCCCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTAGCCTCGAACTCGGAAATCCGCCTGTCTCTGCTTCCCAAGT  350

seq1  GCTGGGATTAAAGGTGTGCGCGGTGGCACTTGCCTTTAATCCCACCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGTGTGCGCGGTGGCACTTGCCTTTAATCCCACCACTC  400

seq1  ATGGGGCAAAAGCAGACCCCATGTGGCCAGCCTGGTCTATAGAGTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCAAAAGCAGACCCCATGTGGCCAGCCTGGTCTATAGAGTTCCAG  450

seq1  CACAGCCAAAACCCTGTCTTGAAAAAACAAAAAGAAAGGTTAACTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAAAACCCTGTCTTGAAAAAACAAAAAGAAAGGTTAACTGCTTT  500

seq1  GAAAAAAATATTCACCTAGACTCTACAAAGGCTTTACCTCACACACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATATTCACCTAGACTCTACAAAGGCTTTACCTCACACACAGGC  550

seq1  TTGTAGGACAAAAGGCATCCTGTGAGGCTTGGACATTTTTTTCCTGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGACAAAAGGCATCCTGTGAGGCTTGGACATTTTTTTCCTGGGGT  600

seq1  CCCCACTCCTACCTAAGGGACTACTTCCTTCCTTAGAAGAATTAATCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCTACCTAAGGGACTACTTCCTTCCTTAGAAGAATTAATCTAA  650

seq1  ATAATAATTTTTGGTTACCAATTTTAAAACATGCTAATCCAAATGATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATTTTTGGTTACCAATTTTAAAACATGCTAATCCAAATGATACC  700

seq1  CTATATAAGGTCCAAATTTTGATCACGTTATTTTATGCTGATTAAATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAAGGTCCAAATTTTGATCACGTTATTTTATGCTGATTAAATGGC  750

seq1  TATATCTGTGAATACGTGCAGAGAAGGGTAGGTTGATGGGTGGCTGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGTGAATACGTGCAGAGAAGGGTAGGTTGATGGGTGGCTGGATC  800

seq1  AGTCGAATTTTGGA-GGACCCGCACGTAATTACCCTTTAAAGCAAATCGA  849
      | |||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  A-TCGAATTTTGGAGGGACCCGCACGTAATTACCCTTTAAAGC-AATCGA  848

seq1  T-CCTCA-CCCTAAGACCCATCTC  871
      | ||||| ||||||||||||||||
seq2  TCCCTCACCCCTAAGACCCATCTC  872