BAC Information

Click to search

BAC

Clone NameB6Ng01-284M02
Chromosome11 (Build37)
Map Location 49,638,766 - 49,738,386
singlet/doubletdoublet
Overlap geneGfpt2, Mapk9, Rasgef1c
Upstream geneLOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073
Downstream geneRnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284M02.bB6Ng01-284M02.g
ACCGA083379GA083380
length6731,085
definitionB6Ng01-284M02.b B6Ng01-284M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,737,725 - 49,738,386)(49,638,766 - 49,639,853)
sequence
gaattctgcagctgcagaaacataacacaaaataaaaatgaattatatca
taagtcaaatgagctggggaggagactctcagatgggactcagccccagc
accagctttctaagtccataatggaaggacctagatacactgtgtgaaca
cctgactcttggaaactcaataaacaagttattttaataatattaaagag
tagatcacaaacctgtgggtggaaatttgagaaaatggggctttttgggt
gggagggtgggagagatatacacaacagggttcatatatgaagttccccc
aaataaaattataaaagtaaataagtaaataaatgtgtttcgcatcttta
agaaggcttgtgtttgggtggggcttgtgtgttctgacccttaagcactg
aaacagcatgataaagggttaaggtaagacaataaagacattacacaaat
acctaactaatccaaaagatgttagtaaaacaagataaaggaacaaatga
gtaatgaaactaataaaaacagtttggaggaggttggggagacggctcag
ggcattaaaaaacatgttctcctcacagctgcctgcaaccacagctcctg
agggtctaaatgcctgcttttggcactgtgggtacaccacacacacacac
acacacccccccccatcacacac
gaattccagagctttgtaaaaataggaacatccatgtaatgaaatatcta
cccttagaaattaccagccaagtcaaccttgggtcagccatgtgtgcggt
tcacctgtctctgcctctggatcctagggaagctgatgtcaacatcatgt
catctgtctccacagataattcagagtgtgagacaactgaaaattgacca
tacaattctaatatcggggtgagggggattttaatattgcttcaccttga
atttttaataccatttccatttgatgacaaactgaggaaaaactagtgca
gacacactcaccatcctactgaataaactgcctttgggttgaccttcccc
tcagagcctaaatgtagctcctgaatgggtagggaaagtaaaataaaata
aagaaggaaaaatgggtaggtttcatatgaaaacattataggggcagtct
gctagccataatctgttttttgttgggtgttgttgttgttttattaaaga
tttatttattttatatacgtgagtacactgttgcagccttcagacacaca
ccagaagagggcatcagatcccatcagagccaccatgtggttgctgggaa
ttgaactcagaacctctggaagagcagtgcgcttaagcgctgagccatct
cttcatctgggctttaaagtgagatttaagtaaacaagctaccaaagtca
gagatagaggctgacacaggtaataccattcttctcctttccacctgcct
ctctaactgatgcttagagtcatccagaagtctaaagagaaaaaggcagg
gggaaatcagaccacttggaagcacttgggtgacaccagtttttagggga
caggtcaggaactaagcacaaccaagggcattggccatctggttggaatt
caccagatttcattcacgccggccggcctcatatcgctttgagtttcttt
aaattgacaaacaaggagttggtgctggcttctgcataaacctgtgtgtg
accttattacaaaaaaaatatgtgagtccacactgggagttgcagaaata
ttcattcaaatagaattctattggagaaagcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49737725_49738386
seq2: B6Ng01-284M02.b_45_717 (reverse)

seq1  GTGTGT---------GTGTGTGTGTGTGTGTGTGTGGTGTACCCACAGTG  41
      ||||||         | |||||||||||||||||||||||||||||||||
seq2  GTGTGTGATGGGGGGGGGTGTGTGTGTGTGTGTGTGGTGTACCCACAGTG  50

seq1  CCAAAAGCAGGCA-TTAGACCCTCAGGAGCTGTGGTTGCAGGCAGCTGTG  90
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCAGGCATTTAGACCCTCAGGAGCTGTGGTTGCAGGCAGCTGTG  100

seq1  AGGAGAACATG-TTTTTAATGCCCTGAGCCGTCTCCCCAACCTCCTCCAA  139
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACATGTTTTTTAATGCCCTGAGCCGTCTCCCCAACCTCCTCCAA  150

seq1  ACTGTTTTTATTAGTTTCATTACTCATTTGTTCCTTTATCTTGTTTTACT  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTTATTAGTTTCATTACTCATTTGTTCCTTTATCTTGTTTTACT  200

seq1  AACATCTTTTGGATTAGTTAGGTATTTGTGTAATGTCTTTATTGTCTTAC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTTTGGATTAGTTAGGTATTTGTGTAATGTCTTTATTGTCTTAC  250

seq1  CTTAACCCTTTATCATGCTGTTTCAGTGCTTAAGGGTCAGAACACACAAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCCTTTATCATGCTGTTTCAGTGCTTAAGGGTCAGAACACACAAG  300

seq1  CCCCACCCAAACACAAGCCTTCTTAAAGATGCGAAACACATTTATTTACT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCAAACACAAGCCTTCTTAAAGATGCGAAACACATTTATTTACT  350

seq1  TATTTACTTTTATAATTTTATTTGGGGGAACTTCATATATGAACCCTGTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTTTTATAATTTTATTTGGGGGAACTTCATATATGAACCCTGTT  400

seq1  GTGTATATCTCTCCCACCCTCCCACCCAAAAAGCCCCATTTTCTCAAATT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATCTCTCCCACCCTCCCACCCAAAAAGCCCCATTTTCTCAAATT  450

seq1  TCCACCCACAGGTTTGTGATCTACTCTTTAATATTATTAAAATAACTTGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCACAGGTTTGTGATCTACTCTTTAATATTATTAAAATAACTTGT  500

seq1  TTATTGAGTTTCCAAGAGTCAGGTGTTCACACAGTGTATCTAGGTCCTTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGTTTCCAAGAGTCAGGTGTTCACACAGTGTATCTAGGTCCTTC  550

seq1  CATTATGGACTTAGAAAGCTGGTGCTGGGGCTGAGTCCCATCTGAGAGTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGGACTTAGAAAGCTGGTGCTGGGGCTGAGTCCCATCTGAGAGTC  600

seq1  TCCTCCCCAGCTCATTTGACTTATGATATAATTCATTTTTATTTTGTGTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCAGCTCATTTGACTTATGATATAATTCATTTTTATTTTGTGTT  650

seq1  ATGTTTCTGCAGCTGCAGAATTC  662
      |||||||||||||||||||||||
seq2  ATGTTTCTGCAGCTGCAGAATTC  673

seq1: chr11_49638766_49639853
seq2: B6Ng01-284M02.g_67_1151

seq1  GAATTCCAGAGCTTTGTAAAAATAGGAACATCCATGTAATGAAATATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCTTTGTAAAAATAGGAACATCCATGTAATGAAATATCTA  50

seq1  CCCTTAGAAATTACCAGCCAAGTCAACCTTGGGTCAGCCATGTGTGCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGAAATTACCAGCCAAGTCAACCTTGGGTCAGCCATGTGTGCGGT  100

seq1  TCACCTGTCTCTGCCTCTGGATCCTAGGGAAGCTGATGTCAACATCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTCTCTGCCTCTGGATCCTAGGGAAGCTGATGTCAACATCATGT  150

seq1  CATCTGTCTCCACAGATAATTCAGAGTGTGAGACAACTGAAAATTGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCTCCACAGATAATTCAGAGTGTGAGACAACTGAAAATTGACCA  200

seq1  TACAATTCTAATATCGGGGTGAGGGGGATTTTAATATTGCTTCACCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTCTAATATCGGGGTGAGGGGGATTTTAATATTGCTTCACCTTGA  250

seq1  ATTTTTAATACCATTTCCATTTGATGACAAACTGAGGAAAAACTAGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATACCATTTCCATTTGATGACAAACTGAGGAAAAACTAGTGCA  300

seq1  GACACACTCACCATCCTACTGAATAAACTGCCTTTGGGTTGACCTTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTCACCATCCTACTGAATAAACTGCCTTTGGGTTGACCTTCCCC  350

seq1  TCAGAGCCTAAATGTAGCTCCTGAATGGGTAGGGAAAGTAAAATAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCTAAATGTAGCTCCTGAATGGGTAGGGAAAGTAAAATAAAATA  400

seq1  AAGAAGGAAAAATGGGTAGGTTTCATATGAAAACATTATAGGGGCAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAAAATGGGTAGGTTTCATATGAAAACATTATAGGGGCAGTCT  450

seq1  GCTAGCCATAATCTGTTTTTTGTTGGGTGTTGTTGTTGTTTTATTAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCATAATCTGTTTTTTGTTGGGTGTTGTTGTTGTTTTATTAAAGA  500

seq1  TTTATTTATTTTATATACGTGAGTACACTGTTGCAGCCTTCAGACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTTATATACGTGAGTACACTGTTGCAGCCTTCAGACACACA  550

seq1  CCAGAAGAGGGCATCAGATCCCATCAGAGCCACCATGTGGTTGCTGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGGGCATCAGATCCCATCAGAGCCACCATGTGGTTGCTGGGAA  600

seq1  TTGAACTCAGAACCTCTGGAAGAGCAGTGCGCTTAAGCGCTGAGCCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAGAACCTCTGGAAGAGCAGTGCGCTTAAGCGCTGAGCCATCT  650

seq1  CTTCATCTGGGCTTTAAAGTGAGATTTAAGTAAACAAGCTACCAAAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTGGGCTTTAAAGTGAGATTTAAGTAAACAAGCTACCAAAGTCA  700

seq1  GAGATAGAGGCTGACACAGGTAATACCATTCTTCTCCTTTCCACCTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGAGGCTGACACAGGTAATACCATTCTTCTCCTTTCCACCTGCCT  750

seq1  CTCTAACTGATGCTTAGAGTCATCCAGAAGTCTAAAGAGAAAAAGGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACTGATGCTTAGAGTCATCCAGAAGTCTAAAGAGAAAAAGGCAGG  800

seq1  GGG-AATCAGACCACTTGGAAGCACTT-GGTGACACCAG-TTTTAGGGGA  847
      ||| ||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GGGAAATCAGACCACTTGGAAGCACTTGGGTGACACCAGTTTTTAGGGGA  850

seq1  CAGGTCAGGAACTAAGCACAACCAAGGGCATTGGCCATCTGGTTGGAAAT  897
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGGTCAGGAACTAAGCACAACCAAGGGCATTGGCCATCTGGTTGG-AAT  899

seq1  TCACCAGATTTCATTTCACGGCCGGCCGGCCTCATATCGCTTTGAGTTTC  947
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  TCACCAGATTTCA-TTCAC-GCCGGCCGGCCTCATATCGCTTTGAGTTTC  947

seq1  TTTAAAATTGACAAACAGGGAGTTGGTGCTGGCTTCTGCATAAACCTGTT  997
      ||| ||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  TTT-AAATTGACAAACAAGGAGTTGGTGCTGGCTTCTGCATAAACCTGT-  995

seq1  GGTGTGACCTAATTAC-AAAAAAATATGTGAGTCCACACTGGGAGGTTGC  1046
       ||||||||| ||||| ||||||||||||||||||||||||||| |||||
seq2  -GTGTGACCTTATTACAAAAAAAATATGTGAGTCCACACTGGGA-GTTGC  1043

seq1  AAGAAATATTTCCTTCAAATAG-ATTCTATTTGAG-AAGCACCA  1088
       ||||||| ||| ||||||||| |||||||| ||| ||||||||
seq2  -AGAAATA-TTCATTCAAATAGAATTCTATTGGAGAAAGCACCA  1085