BAC Information

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BAC

Clone NameB6Ng01-284N03
Chromosome11 (Build37)
Map Location 62,132,417 - 62,298,768
singlet/doubletdoublet
Overlap geneNcor1, Pigl
Upstream gene4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19
Downstream genePrr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284N03.bB6Ng01-284N03.g
ACCGA083429GA083430
length1,136766
definitionB6Ng01-284N03.b B6Ng01-284N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,132,417 - 62,133,546)(62,298,007 - 62,298,768)
sequence
gaattcattctcctctgctacctgtatgtggcaggctgagctcaggctac
caggcctgcaatcactttatactgaagtcatttcagtatctcattggccc
tacaattatatttttatataattgtattaataatggtttccccccacaca
ctcttgttaaaacattacactgcgcagtcacgattctgatttcttagtaa
gagcaaaaggtcagtcagcacagtgtatgggaccagacttaactcgcaca
tcctggttaccaccatatagtgcagacacagggatggatgggccatgtaa
atataaaatccttttttccaacaactagacccaagtaattacatagaaaa
aacatcattcttgcccaaactgtactcactcactgagaggtgaattaaga
aagcactgagacaaagtgactctcattttatcagttaagtggggccctca
cctgttgaagagggccgatcttcccatgcccatcctggtgtctgcctgtg
gtaatcaccttctgaatgcacagaggagacagaagaaggcctttcagttc
ctaaatagctttgcccaggaataggagatttagacttcctgctgtttgat
ttgttgatcagctttggtttgcatactcctaaaagtgaaattcaaattaa
actattgattactgataaattatcagtggcaacataagttctcagtgaca
aaaccaaaccctaccaaaatgttgactactaacgctaagtgaagactcca
gatcagggcacatcatcaacctataaaggtggcaaaggctgctggcctta
agactgtaggtaatgttaataaatatctgcttccctctatctatctccac
caacagcccagtttaacagaaccaagtggagagaaaaaagacaggctgca
gcagccatgcctcctaccccaggacctcacagaaactctgtaagtctcac
tgtctctctctattctccccaccacagagtcacagcactgagacacgtgt
gactgggttctaataacaaactatcaaaagacttaaagaacccaatatca
ctagcaatgtattttttcatcagctccaacaggttggcatcttaccccaa
gtttatatcacttaactcctaatagttgccaactga
gaattcaacctgcctgggtactctggaagaaaagccagtgctcttaaccg
tggagccatctctccaaccccctgacaaaatctttttttgtttgtttttc
tttctttctttctttcttttttttttttctgagatagggtttttctgtgt
agccctggctgccctggaactctctctgtagaccaggctggcctagaact
cacagagatccccggcctctgcctcctgggcagacatctttttttttttt
ttttttttaagatttatttattgttatatgtaagtacactgtagctgtct
ttagacacaccaaaagagggtgtcagaacagatggttgtgagccaccatg
tggttactgggatttgaactcagaacattcagaaggggagtcagtgctct
taaccattgagccatctctccagcctgacaaaatctgttttgtttgtttg
tttgtttttaagttagcctgttgtggggacttatagaaggtcactaggaa
attgttcaggtatgtgcagaaaataggttaatttgctaatctgaaacaca
ggtcaaaaatagcaccaataacaacagctcacaaactgcactcccaaggc
atttcattttacttattctggacttatttctctctctgtgtgtgttgtgt
atgtgtgtgtacatgtctgtatgcaggtttatttgccttgcatatgcaga
ggccaaaagaggctatccaatgtctttctatttccctagagacaaggtct
ctcactgatccctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62132417_62133546
seq2: B6Ng01-284N03.b_48_1183

seq1  GAATTCATTCTCCTCTGCTACCTGTATGTGGCAGGCTGAGCTCAGGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCCTCTGCTACCTGTATGTGGCAGGCTGAGCTCAGGCTAC  50

seq1  CAGGCCTGCAATCACTTTATACTGAAGTCATTTCAGTATCTCATTGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGCAATCACTTTATACTGAAGTCATTTCAGTATCTCATTGGCCC  100

seq1  TACAATTATATTTTTATATAATTGTATTAATAATGGTTTCCCCCCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATATTTTTATATAATTGTATTAATAATGGTTTCCCCCCACACA  150

seq1  CTCTTGTTAAAACATTACACTGCGCAGTCACGATTCTGATTTCTTAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTAAAACATTACACTGCGCAGTCACGATTCTGATTTCTTAGTAA  200

seq1  GAGCAAAAGGTCAGTCAGCACAGTGTATGGGACCAGACTTAACTCGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAAGGTCAGTCAGCACAGTGTATGGGACCAGACTTAACTCGCACA  250

seq1  TCCTGGTTACCACCATATAGTGCAGACACAGGGATGGATGGGCCATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTACCACCATATAGTGCAGACACAGGGATGGATGGGCCATGTAA  300

seq1  ATATAAAATCCTTTTTTCCAACAACTAGACCCAAGTAATTACATAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATCCTTTTTTCCAACAACTAGACCCAAGTAATTACATAGAAAA  350

seq1  AACATCATTCTTGCCCAAACTGTACTCACTCACTGAGAGGTGAATTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATTCTTGCCCAAACTGTACTCACTCACTGAGAGGTGAATTAAGA  400

seq1  AAGCACTGAGACAAAGTGACTCTCATTTTATCAGTTAAGTGGGGCCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGAGACAAAGTGACTCTCATTTTATCAGTTAAGTGGGGCCCTCA  450

seq1  CCTGTTGAAGAGGGCCGATCTTCCCATGCCCATCCTGGTGTCTGCCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGAAGAGGGCCGATCTTCCCATGCCCATCCTGGTGTCTGCCTGTG  500

seq1  GTAATCACCTTCTGAATGCACAGAGGAGACAGAAGAAGGCCTTTCAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCACCTTCTGAATGCACAGAGGAGACAGAAGAAGGCCTTTCAGTTC  550

seq1  CTAAATAGCTTTGCCCAGGAATAGGAGATTTAGACTTCCTGCTGTTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAGCTTTGCCCAGGAATAGGAGATTTAGACTTCCTGCTGTTTGAT  600

seq1  TTGTTGATCAGCTTTGGTTTGCATACTCCTAAAAGTGAAATTCAAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATCAGCTTTGGTTTGCATACTCCTAAAAGTGAAATTCAAATTAA  650

seq1  ACTATTGATTACTGATAAATTATCAGTGGCAACATAAGTTCTCAGTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGATTACTGATAAATTATCAGTGGCAACATAAGTTCTCAGTGACA  700

seq1  AAACCAAACCCTACCAAAATGTTGACTACTAACGCTAAGTGAAGACTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCCTACCAAAATGTTGACTACTAACGCTAAGTGAAGACTCCA  750

seq1  GATCAGGGCACATCATCAACCTATAAAGGTGGCAAAGGCTGCTGGCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGGCACATCATCAACCTATAAAGGTGGCAAAGGCTGCTGGCCTTA  800

seq1  AGACTGTAGGTAATGTTAATAAATATCTGCTTCCCTCTATCTATCTCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTAGGTAATGTTAATAAATATCTGCTTCCCTCTATCTATCTCCAC  850

seq1  CAACAGCCCAGTTTAACAGAACCAAGTGGAGAGAAAAAAGACAGGCTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCCAGTTTAACAGAACCAAGTGGAGAGAAAAAAGACAGGCTGCA  900

seq1  GCAGCCATGCCTCCTACCCCAGGACCTCACAGAAACTCTGTAAGTCTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCATGCCTCCTACCCCAGGACCTCACAGAAACTCTGTAAGTCTCAC  950

seq1  TGTCTCTCTCTATTCT-CCCACCACAGAGTTCACAGCACTGAGACACGTG  999
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  TGTCTCTCTCTATTCTCCCCACCACAGAG-TCACAGCACTGAGACACGTG  999

seq1  TGACTGGGTTCT-ATAACAAACTATC-ACAGACTTAAAGAACCC-ATATC  1046
      |||||||||||| ||||||||||||| | ||||||||||||||| |||||
seq2  TGACTGGGTTCTAATAACAAACTATCAAAAGACTTAAAGAACCCAATATC  1049

seq1  ACTTAGC-ATGTA-TTTTTCATCAGCTCCAACAG--TTGCATCTTACCCC  1092
      || |||| ||||| ||||||||||||||||||||  | ||||||||||||
seq2  AC-TAGCAATGTATTTTTTCATCAGCTCCAACAGGTTGGCATCTTACCCC  1098

seq1  A--GTTATATCACTTTAACTCCCTAATAGTTGCCAACTGA  1130
      |   ||||||||| |||||| |||||||||||||||||||
seq2  AAGTTTATATCAC-TTAACT-CCTAATAGTTGCCAACTGA  1136

seq1: chr11_62298007_62298768
seq2: B6Ng01-284N03.g_71_836 (reverse)

seq1  TCTA-GGATCAGTGAGAGACCTTGTCTC-AGGGAAATAG-AAGACATTGG  47
      |||| ||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TCTAGGGATCAGTGAGAGACCTTGTCTCTAGGGAAATAGAAAGACATTGG  50

seq1  ATAGCCTCTTTTGGCCTCTGCATATGCAAGGCAAATAAACCTGCATACAG  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCTTTTGGCCTCTGCATATGCAAGGCAAATAAACCTGCATACAG  100

seq1  ACATGTACACACACATACACAACACACACAGAGAGAGAAATAAGTCCAGA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACACACACATACACAACACACACAGAGAGAGAAATAAGTCCAGA  150

seq1  ATAAGTAAAATGAAATGCCTTGGGAGTGCAGTTTGTGAGCTGTTGTTATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAAATGAAATGCCTTGGGAGTGCAGTTTGTGAGCTGTTGTTATT  200

seq1  GGTGCTA-TTTTGACCTGTGTTTCAGATTAGCAAATTAACCTATTTTCTG  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTATTTTTGACCTGTGTTTCAGATTAGCAAATTAACCTATTTTCTG  250

seq1  CACATACCTGAACAATTTCCTAGTGACCTTCTATAAGTCCCCACAACAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCTGAACAATTTCCTAGTGACCTTCTATAAGTCCCCACAACAGG  300

seq1  CTAACTTAAAAACAAACAAACAAACAAAACAGATTTTGTCAGGCTGGAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTAAAAACAAACAAACAAACAAAACAGATTTTGTCAGGCTGGAGA  350

seq1  GATGGCTCAATGGTTAAGAGCACTGACTCCCCTTCTGAATGTTCTGAGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAATGGTTAAGAGCACTGACTCCCCTTCTGAATGTTCTGAGTT  400

seq1  CAAATCCCAGTAACCACATGGTGGCTCACAACCATCTGTTCTGACACCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAGTAACCACATGGTGGCTCACAACCATCTGTTCTGACACCCT  450

seq1  CTTCTGGTGTGTCTAAAGACAGCTACAGTGTACTTACATATAACAATAAA  496
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTGTGTCTAAAGACAGCTACAGTGTACTTACATATAACAATAAA  500

seq1  TAAATCTTAAAAAAAAAAAAAAAAAAAAGATGTCTGCCCAGGAGGCAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTAAAAAAAAAAAAAAAAAAAAGATGTCTGCCCAGGAGGCAGAG  550

seq1  GCCGGGGATCTCTGTGAGTTCTAGGCCAGCCTGGTCTACAGAGAGAGTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGGATCTCTGTGAGTTCTAGGCCAGCCTGGTCTACAGAGAGAGTTC  600

seq1  CAGGGCAGCCAGGGCTACACAGAAAAACCCTATCTCAGAAAAAAAAAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGCCAGGGCTACACAGAAAAACCCTATCTCAGAAAAAAAAAAAA  650

seq1  GAAAGAAAGAAAGAAAGAAAAACAAACAAAAAAAGATTTTGTCAGGGGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAAACAAACAAAAAAAGATTTTGTCAGGGGGT  700

seq1  TGGAGAGATGGCTCCACGGTTAAGAGCACTGGCTTTTCTTCCAGAGTACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGGCTCCACGGTTAAGAGCACTGGCTTTTCTTCCAGAGTACC  750

seq1  CAGGCAGGTTGAATTC  762
      ||||||||||||||||
seq2  CAGGCAGGTTGAATTC  766