BAC Information

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BAC

Clone NameB6Ng01-285C02
Chromosome11 (Build37)
Map Location 35,371,508 - 35,372,605
singlet/doubletsinglet
Overlap geneSlit3
Upstream geneDock2, Dock2, Ccdc99, LOC100038976, LOC100039006
Downstream genePank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285C02.bB6Ng01-285C02.g
ACCGA083656GA083657
length1,1461,101
definitionB6Ng01-285C02.b B6Ng01-285C02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggacataccaaagggattacttacaataatgaagttggcttc
actctagagaagcagagatgatttaccatatgctaattaataagtgtact
caaggacaggaatcatattgacggatgcaataaaagcttttgtcaaaaca
ccttttcattataaagccctgggagggagggaggctagggaatgtaggag
ccataacaaagggtgtgtacaatgaaggaaaaccacgatgatgctaactg
gagaaaagacacctccatcaaaatcaggaacaagacaaaggtgtccactg
tatcctgttcagtacagtgcttgaaatttacccagggcaacaggagaaga
gaaggaaataaaaaagacacaaagagaaaaggaagaagtctgatttctgt
atctgcaaattcgatgatttaataccttagagaccctaaagactaccaga
aaattctgggagccgataaacactttcagtaaagcaccaggatacaaaat
tacacacccacaactcagcagccttcctatatatgaatgatgtaagtaaa
taatacctgaaagataccagggaaataatctcaaaaatgtagaacaaatc
taacaagagaagcaaaagacatgtacaatgaaaccattgaagtgcagaag
aaggaaatttatggattctagaagataaagaggctcttccaccctcatgg
atcagaaaactttaacttgttaaactggctgacctaccaaaagtgatcta
tagattcaatgcccattaactaccaacatcattctttaaagaaaaaaaca
actcaattaaaactcgtaaggaatcttaaaagacctccactagccatggc
aaccctgagcaaaaagaatcgagtggtagttatcaccatatctgatttca
agttatactacagagcgatagtgataaaaacagcaaggtattgacgggaa
acagactcagatatggcagagagtgaaagctgatacagcctgcagccaca
gtcactgactgcactgtatgtgcaaccaacgaacaacaatcacacaacta
acaacactaacaacaacacaacgcagctagcaacacatcagccagccaac
caccatcagccagtcaggtcaggccagtcgaatcaatctaaaaacg
gaattcaacagaagcactgttggaggtcattctagctttcaggcatgaga
cacatcagccatgctcaggctcactttaaataaatgtggctgctgttgat
tcaccaaggtgaccatcgaggaaggagccacctcacttatctgggcttag
ggagagagaagaattctgcttggaggcagagaatgaatgggccagtctac
cgagcgagtccatcagatcctaggagtctggctgtctggagggggtgact
atcagaggggttctcagaacccaggaaagttggcccagggggaggctgca
tagttgcattcaccacagatgcctgcttttgtaattatgtgatacactcg
cacaatagctcacagataatattgttgcattagagccaattacatggtgt
tatggacacacaacatgcagattacacccagagccaagaaagctcagagt
gataaagcgatggcctaatgggaggagacagagggaaatgtcagccttat
taaggttgccagggtggagtggatgtagctggtcagagctccttagatca
aagatggctatcttgctgactcaagagagaactgcacatgggcacccagc
agagaccaataaagagctgggggcagggcagggggagggcagaagccaca
ccagatgtccccagtggtggttacagcctcctgttcctaattgggaaagc
accatccctgccataagataggtcttcggttgtccagtatactgacctgc
atacttaccggcaggagagtctgttctcagctcccctctttgttcagtga
gtgtggattgtgacgttagccaggtgtggtggcacacaccctataattga
cagctacttgggaggctgaggcaggagcattgcaatttcaagggcagccc
tgggcaacttgttgagatcctgtctcagaacttaaactagaaacaaaagt
ctggggggaggaaatcagtagtgtcgtgttgtcttgcatgccttcaaccc
tgtgtttggagccccagagaacaaaagaagtggccctgtgttacgagctc
tggaaggagtccgtatatgggaactgctgcagtctgcctcaagaatttct
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_35371508_35372605
seq2: B6Ng01-285C02.g_64_1164

seq1  GAATTCAACAGAAGCACTGTTGGAGGTCATTCTAGCTTTCAGGCATGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGAAGCACTGTTGGAGGTCATTCTAGCTTTCAGGCATGAGA  50

seq1  CACATCAGCCATGCTCAGGCTCACTTTAAATAAATGTGGCTGCTGTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGCCATGCTCAGGCTCACTTTAAATAAATGTGGCTGCTGTTGAT  100

seq1  TCACCAAGGTGACCATCGAGGAAGGAGCCACCTCACTTATCTGGGCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAGGTGACCATCGAGGAAGGAGCCACCTCACTTATCTGGGCTTAG  150

seq1  GGAGAGAGAAGAATTCTGCTTGGAGGCAGAGAATGAATGGGCCAGTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAAGAATTCTGCTTGGAGGCAGAGAATGAATGGGCCAGTCTAC  200

seq1  CGAGCGAGTCCATCAGATCCTAGGAGTCTGGCTGTCTGGAGGGGGTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCGAGTCCATCAGATCCTAGGAGTCTGGCTGTCTGGAGGGGGTGACT  250

seq1  ATCAGAGGGGTTCTCAGAACCCAGGAAAGTTGGCCCAGGGGGAGGCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGGGTTCTCAGAACCCAGGAAAGTTGGCCCAGGGGGAGGCTGCA  300

seq1  TAGTTGCATTCACCACAGATGCCTGCTTTTGTAATTATGTGATACACTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCATTCACCACAGATGCCTGCTTTTGTAATTATGTGATACACTCG  350

seq1  CACAATAGCTCACAGATAATATTGTTGCATTAGAGCCAATTACATGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGCTCACAGATAATATTGTTGCATTAGAGCCAATTACATGGTGT  400

seq1  TATGGACACACAACATGCAGATTACACCCAGAGCCAAGAAAGCTCAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACACACAACATGCAGATTACACCCAGAGCCAAGAAAGCTCAGAGT  450

seq1  GATAAAGCGATGGCCTAATGGGAGGAGACAGAGGGAAATGTCAGCCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGCGATGGCCTAATGGGAGGAGACAGAGGGAAATGTCAGCCTTAT  500

seq1  TAAGGTTGCCAGGGTGGAGTGGATGTAGCTGGTCAGAGCTCCTTAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTGCCAGGGTGGAGTGGATGTAGCTGGTCAGAGCTCCTTAGATCA  550

seq1  AAGATGGCTATCTTGCTGACTCAAGAGAGAACTGCACATGGGCACCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCTATCTTGCTGACTCAAGAGAGAACTGCACATGGGCACCCAGC  600

seq1  AGAGACCAATAAAGAGCTGGGGGCAGGGCAGGGGGAGGGCAGAAGCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCAATAAAGAGCTGGGGGCAGGGCAGGGGGAGGGCAGAAGCCACA  650

seq1  CCAGATGTCCCCAGTGGTGGTTACAGCCTCCTGTTCCTAATTGGGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTCCCCAGTGGTGGTTACAGCCTCCTGTTCCTAATTGGGAAAGC  700

seq1  ACCATCCCTGCCATAAGATAGGTCTTCGGTTGTCCAGTATACTGACCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCTGCCATAAGATAGGTCTTCGGTTGTCCAGTATACTGACCTGC  750

seq1  ATACTTACCGGCAGGAGAGTCTGTTCTCAGCTCCCCTCTTTGTTCAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACCGGCAGGAGAGTCTGTTCTCAGCTCCCCTCTTTGTTCAGTGA  800

seq1  GTGTGGATTGTGACGTTAGCCAGGTGTGGTGGCACACA-CCTATAA-TGA  848
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  GTGTGGATTGTGACGTTAGCCAGGTGTGGTGGCACACACCCTATAATTGA  850

seq1  CAGCTACTTGGGAGGCTGAGGCAGGAGCATTGCAAATTCAAGGGCAG-CC  897
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  CAGCTACTTGGGAGGCTGAGGCAGGAGCATTGCAATTTCAAGGGCAGCCC  900

seq1  TGGGCAACTTGTTGAGATCCTGTCTCAGAACTTAAACTAGAAACAAAAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAACTTGTTGAGATCCTGTCTCAGAACTTAAACTAGAAACAAAAGT  950

seq1  CT-GGGGGAGGAAATCAGTAGTGTCGTGTTGTCTTGCATGCCTCAAACCC  996
      || ||||||||||||||||||||||||||||||||||||||||  |||||
seq2  CTGGGGGGAGGAAATCAGTAGTGTCGTGTTGTCTTGCATGCCTTCAACCC  1000

seq1  TGTGTTTTGAGCCCCAGGAGAACAAAAAGAAGTGG-CTTGTGTAAGGAGC  1045
      ||||||| |||||||| |||||| ||||||||||| | ||||| | ||| 
seq2  TGTGTTTGGAGCCCCA-GAGAAC-AAAAGAAGTGGCCCTGTGTTACGAG-  1047

seq1  CTCTGG-AGGAGTCGGTAATATGG--ACTGCGTGGCAGTCTGCCCCAAG-  1091
      |||||| ||||||| || ||||||  |||||   |||||||||| |||| 
seq2  CTCTGGAAGGAGTCCGT-ATATGGGAACTGC--TGCAGTCTGCCTCAAGA  1094

seq1  ATTTCTA  1098
      |||||||
seq2  ATTTCTA  1101