BAC Information

Click to search

BAC

Clone NameB6Ng01-285G11
Chromosome11 (Build37)
Map Location 57,153,598 - 57,329,446
singlet/doubletdoublet
Overlap geneLOC667878, 1810073G14Rik
Upstream geneLOC624168, Gria1
Downstream geneMfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285G11.bB6Ng01-285G11.g
ACCGA083862GA083863
length1,004995
definitionB6Ng01-285G11.b B6Ng01-285G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,328,866 - 57,329,446)(57,153,598 - 57,154,246)
sequence
gaattcaattaggctttggttacatttgacctaactatcaaaacagtatt
aggaatatttgtaaagaatattaaaaaattgaaagctgatctgacatagt
ttagacaatgtctggaacaattaaagtcagaatggatgtttaatgataga
gttttttgaaggatagtctagtgaaagaaaagattgataaactggtttca
tcaaaatgaaaacttttcattacatgaccccatgaaaataataaaaagat
aggcgtggtgactcatgtctgtaattccagcacttggaagcctgaggcag
gaggattgccataaggtagtcagcaaagagggaaatcctgtctcaaaaga
cgaagtaagacaatgaaaaaaagatgggcaactagatgtttcttagaaga
aaatattcagatggcaaataagcacttgaaaagatgtcaagtgtctttag
tcttgaggaaatgaaacagaagccacagtgcgctaccaccacatcactta
caaaaatggctcaaagtagcggggaaacctcatcagaatgcagaaagttt
tggttatttgtactactctggaaaagatgacagttatatctaaaaataag
catggatttactatgacccatattattaatgtagtcttcattatttattc
cagagaaaagcttatgttcacataaatacctgtacgtgaactttgtttta
attgtatgacagcctcgtgttggaaactgcagattaccttgaatgggcaa
atatattgtgatgtatatatgtatgtatgtatgtatccatccatccatcc
atccatccatccctctctctccctcccttcacaatgatgttactgagaaa
ttgaaagagacttctgatgcaaccatagtagaatggagggacttaggctg
agtgaaaaaagtcactccaaagataatctgtgtacctcaatgtatatatg
acttcaaatgtcagtgtccgagaacagatcagtagttggttgctgtagtt
gaaa
gaattcactttgtagaccaggctggcctcaaactcagaaatctacctgac
tctgcctcccaaatgctgggattaaaggtgtgcgccactaccgcctggct
aaataaatctttctaaaaaatattttaaagaatgctttaaatctgatgtc
tgggccactccagccagaaaaagcaagtaggctgactatagagcctcacc
tctctctcctgtcctccaaattcaatcccccagtttcatttcctgctctg
taacagaccttctgctgcaccctcccctttttctctacccccatctccaa
tggattgcatataccttcatctccaaccttctttcccttccttcatttat
ttttcccaatccccaagaccagcaagagttccctggggacccaccagtca
agcctgccagagaagaaattaggccagacaagaggtagatgagcctcaga
tcttcattcttcttcctctccttcaaatttcctagtctgatccccagatc
tgtagcagactaccagtgtgacctctcctcattgtttgtttgcccccatt
cctagaatatcaaggggatccttgttgaacaccatgttttcttcctacta
ctggaacccattatccatgcccccgcccatcctcgttcttaagtgtcagc
tcccagtacctaaaaacatacttaagatggaagctccagtggtcataact
aataagatcctagaagaattcccaatacatagttaccacaccctcataag
aatcagagagggaaatagaaatcaaggaactaaacacccacccaacaaaa
gacaagatcagatatcagaccaagaattgcaatcatcccaaaaccagatg
tctagatgccagcataaaaacacagtaaataactgccatgataatatgtc
cccattagagccccagaaactttgccacagtatctcttgagaattgcacc
atagctgaagcaaaagacaaatatctttttttaattaaggtattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57328866_57329446
seq2: B6Ng01-285G11.b_45_625 (reverse)

seq1  GTCATCTTTTCCAGAGTAGTACAAATAACCAAAACTTTCTGCATTCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTTTCCAGAGTAGTACAAATAACCAAAACTTTCTGCATTCTGAT  50

seq1  GAGGTTTCCCCGCTACTTTGAGCCATTTTTGTAAGTGATGTGGTGGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTCCCCGCTACTTTGAGCCATTTTTGTAAGTGATGTGGTGGTAGC  100

seq1  GCACTGTGGCTTCTGTTTCATTTCCTCAAGACTAAAGACACTTGACATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTGGCTTCTGTTTCATTTCCTCAAGACTAAAGACACTTGACATCT  150

seq1  TTTCAAGTGCTTATTTGCCATCTGAATATTTTCTTCTAAGAAACATCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTGCTTATTTGCCATCTGAATATTTTCTTCTAAGAAACATCTAG  200

seq1  TTGCCCATCTTTTTTTCATTGTCTTACTTCGTCTTTTGAGACAGGATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATCTTTTTTTCATTGTCTTACTTCGTCTTTTGAGACAGGATTTC  250

seq1  CCTCTTTGCTGACTACCTTATGGCAATCCTCCTGCCTCAGGCTTCCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGCTGACTACCTTATGGCAATCCTCCTGCCTCAGGCTTCCAAGT  300

seq1  GCTGGAATTACAGACATGAGTCACCACGCCTATCTTTTTATTATTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATTACAGACATGAGTCACCACGCCTATCTTTTTATTATTTTCAT  350

seq1  GGGGTCATGTAATGAAAAGTTTTCATTTTGATGAAACCAGTTTATCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCATGTAATGAAAAGTTTTCATTTTGATGAAACCAGTTTATCAATC  400

seq1  TTTTCTTTCACTAGACTATCCTTCAAAAAACTCTATCATTAAACATCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCACTAGACTATCCTTCAAAAAACTCTATCATTAAACATCCAT  450

seq1  TCTGACTTTAATTGTTCCAGACATTGTCTAAACTATGTCAGATCAGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTTAATTGTTCCAGACATTGTCTAAACTATGTCAGATCAGCTTT  500

seq1  CAATTTTTTAATATTCTTTACAAATATTCCTAATACTGTTTTGATAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTAATATTCTTTACAAATATTCCTAATACTGTTTTGATAGTTA  550

seq1  GGTCAAATGTAACCAAAGCCTAATTGAATTC  581
      |||||||||||||||||||||||||||||||
seq2  GGTCAAATGTAACCAAAGCCTAATTGAATTC  581

seq1: chr11_57153598_57154246
seq2: B6Ng01-285G11.g_69_717

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTACCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTACCTGAC  50

seq1  TCTGCCTCCCAAATGCTGGGATTAAAGGTGTGCGCCACTACCGCCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAATGCTGGGATTAAAGGTGTGCGCCACTACCGCCTGGCT  100

seq1  AAATAAATCTTTCTAAAAAATATTTTAAAGAATGCTTTAAATCTGATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTTTCTAAAAAATATTTTAAAGAATGCTTTAAATCTGATGTC  150

seq1  TGGGCCACTCCAGCCAGAAAAAGCAAGTAGGCTGACTATAGAGCCTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACTCCAGCCAGAAAAAGCAAGTAGGCTGACTATAGAGCCTCACC  200

seq1  TCTCTCTCCTGTCCTCCAAATTCAATCCCCCAGTTTCATTTCCTGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCTGTCCTCCAAATTCAATCCCCCAGTTTCATTTCCTGCTCTG  250

seq1  TAACAGACCTTCTGCTGCACCCTCCCCTTTTTCTCTACCCCCATCTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGACCTTCTGCTGCACCCTCCCCTTTTTCTCTACCCCCATCTCCAA  300

seq1  TGGATTGCATATACCTTCATCTCCAACCTTCTTTCCCTTCCTTCATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCATATACCTTCATCTCCAACCTTCTTTCCCTTCCTTCATTTAT  350

seq1  TTTTCCCAATCCCCAAGACCAGCAAGAGTTCCCTGGGGACCCACCAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAATCCCCAAGACCAGCAAGAGTTCCCTGGGGACCCACCAGTCA  400

seq1  AGCCTGCCAGAGAAGAAATTAGGCCAGACAAGAGGTAGATGAGCCTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCCAGAGAAGAAATTAGGCCAGACAAGAGGTAGATGAGCCTCAGA  450

seq1  TCTTCATTCTTCTTCCTCTCCTTCAAATTTCCTAGTCTGATCCCCAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTCTTCTTCCTCTCCTTCAAATTTCCTAGTCTGATCCCCAGATC  500

seq1  TGTAGCAGACTACCAGTGTGACCTCTCCTCATTGTTTGTTTGCCCCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGACTACCAGTGTGACCTCTCCTCATTGTTTGTTTGCCCCCATT  550

seq1  CCTAGAATATCAAGGGGATCCTTGTTGAACACCATGTTTTCTTCCTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATATCAAGGGGATCCTTGTTGAACACCATGTTTTCTTCCTACTA  600

seq1  CTGGAACCCATTATCCATGCCCCCGCCCATCCTCGTTCTTAAGTGTCAG  649
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCCATTATCCATGCCCCCGCCCATCCTCGTTCTTAAGTGTCAG  649