BAC Information

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BAC

Clone NameB6Ng01-286G01
Chromosome11 (Build37)
Map Location 96,820,191 - 96,967,905
singlet/doubletdoublet
Overlap geneD030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21
Upstream geneIgf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo
Downstream geneTbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286G01.bB6Ng01-286G01.g
ACCGA084589GA084590
length9761,038
definitionB6Ng01-286G01.b B6Ng01-286G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,967,301 - 96,967,905)(96,820,191 - 96,821,226)
sequence
gaattctaagtagatgtcaccacaccagatgtcaccacaccaggctgcct
cttcctcttctcctcctcctcctcttcagtgtgggcactgggtactcatg
tcttcgtgattgtgcagcatctcgccatcttttaaagtgaaactaagacc
ccccctcctttgcctttcacttacaatcttcctgtatcttttgtcaccca
ctatcgggacaacagtaggacagatggacagaaaccgtagtgtggggtat
tcatcaatctctctataagcttcagtgtcttcaggtgtagagtttcaaga
cgttttgtttctccaaggactgtcttgatgagttggcttgtgcgtaagtg
gaggatggataaacatagtatgaggctgggtatggggcttagtggcaggg
ccctagcctaacatccgcgaggccctgggttctatatttggcaccaaaaa
ggtgtttgctattctgttcctttagaatagaaaatatgaatgagacctgg
tcactaggtaagaaaatatatatgttttatgtttttttatgtgtatgaat
gttacgtcttcatgcatgtgttacaggtagttgtggcccatcatgtgggt
gtggagaatcaagcccaggtcgtctgggaaagcagagccatctctccagc
caccttaccctcttaagacagagtctccctgtcccgtagctctagctacc
ctagaactgcatacgtagaccaggctggcctcagactcatggagatccat
ttgcctttccctcctgagtgctgggattaaagacaagtgccaagccaggc
atggtgggtggacctctgtgggtcagaggccagcctggctcacatagcaa
attctaggatagccagaattacatatgaaaccctgcttcaaatataaaat
acgctaggcagtggtggcgcacacttttaatcccagcacttgggaggaga
ggcaagcagatttcttgagttcgaga
gaattctttctgaaagagagatctgaccagagagatgcgacaactacatg
taaggtggacagagtccttaggcagcgttggaattactatccgaagcatg
tggtgagacctgaatggtacctccccgatagacaccagcagttcactagt
gagtttcaggcttgaaggctgcggtgtgcgcaggggctgtgcctgtgtgg
gagaattaaagcatttgcaagtgggagggggatcatggtggcagtttatg
tttaaatgatccagggagaaaaaaatcctttgtaagactgattttaactg
gggttatatttaattcctggatactgaagacttttagttaaaggataaca
tctgaacctgccatcccttaatacatatagaagcctcaggtccctttcca
gttctgtatatgtaccccatttaaaaaccttacaatgttgtacttgtttt
ttctctgaggtagtaaatggctggctgagtaactggggcgcaggaaggag
aggacctgccccttctgtcttctcttctgctagcctcagacaccctgagt
caggcgagggcccactgctcccttggtgggtactgagtgggtgttaagca
ctgtttgttttattattacctgactgtgtgggggtgctttgtctaatgtc
tttatcacatttgtttatcatgtgcagatggagactacaggaggactcgg
aatcctctgggagtggagttacagctggttgagagccacgtgagtgctgg
gaatcaaccttggaacctctggaaaaagcggcgagtcaaccacacccatc
gctcaagccccattgctgggcctggtgacaacgcatgtcaggtcctgcct
cagcccccttgaattgcatgtttacagatgtgcaccagagcacctgactc
aagttttaaacgatcattttgagcactccttctcatggccatttccctgt
aatcagcagagacactggggaatggagcagtttgactcccattgctgcct
ggagtctccttactggccccgtctgtctgagcaacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96967301_96967905
seq2: B6Ng01-286G01.b_45_649 (reverse)

seq1  TCCACACCCACATGATGGGCCACAACTACCTGTAACACATGCATGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCCACATGATGGGCCACAACTACCTGTAACACATGCATGAAGAC  50

seq1  GTAACATTCATACACATAAAAAAACATAAAACATATATATTTTCTTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATTCATACACATAAAAAAACATAAAACATATATATTTTCTTACCT  100

seq1  AGTGACCAGGTCTCATTCATATTTTCTATTCTAAAGGAACAGAATAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCAGGTCTCATTCATATTTTCTATTCTAAAGGAACAGAATAGCAA  150

seq1  ACACCTTTTTGGTGCCAAATATAGAACCCAGGGCCTCGCGGATGTTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTTTGGTGCCAAATATAGAACCCAGGGCCTCGCGGATGTTAGGC  200

seq1  TAGGGCCCTGCCACTAAGCCCCATACCCAGCCTCATACTATGTTTATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCCTGCCACTAAGCCCCATACCCAGCCTCATACTATGTTTATCCA  250

seq1  TCCTCCACTTACGCACAAGCCAACTCATCAAGACAGTCCTTGGAGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACTTACGCACAAGCCAACTCATCAAGACAGTCCTTGGAGAAACA  300

seq1  AAACGTCTTGAAACTCTACACCTGAAGACACTGAAGCTTATAGAGAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCTTGAAACTCTACACCTGAAGACACTGAAGCTTATAGAGAGATT  350

seq1  GATGAATACCCCACACTACGGTTTCTGTCCATCTGTCCTACTGTTGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATACCCCACACTACGGTTTCTGTCCATCTGTCCTACTGTTGTCCC  400

seq1  GATAGTGGGTGACAAAAGATACAGGAAGATTGTAAGTGAAAGGCAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGGGTGACAAAAGATACAGGAAGATTGTAAGTGAAAGGCAAAGGA  450

seq1  GGGGGGGTCTTAGTTTCACTTTAAAAGATGGCGAGATGCTGCACAATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGTCTTAGTTTCACTTTAAAAGATGGCGAGATGCTGCACAATCAC  500

seq1  GAAGACATGAGTACCCAGTGCCCACACTGAAGAGGAGGAGGAGGAGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATGAGTACCCAGTGCCCACACTGAAGAGGAGGAGGAGGAGAAGA  550

seq1  GGAAGAGGCAGCCTGGTGTGGTGACATCTGGTGTGGTGACATCTACTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGCAGCCTGGTGTGGTGACATCTGGTGTGGTGACATCTACTTAG  600

seq1  AATTC  605
      |||||
seq2  AATTC  605

seq1: chr11_96820191_96821226
seq2: B6Ng01-286G01.g_67_1103

seq1  GAATTCTTTCTGAAAGAGAGATCTGACCAGAGAGATGCGACAACTACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGAAAGAGAGATCTGACCAGAGAGATGCGACAACTACATG  50

seq1  TAAGGTGGACAGAGTCCTTAGGCAGCGTTGGAATTACTATCCGAAGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGGACAGAGTCCTTAGGCAGCGTTGGAATTACTATCCGAAGCATG  100

seq1  TGGTGAGACCTGAATGGTACCTCCCCGATAGACACCAGCAGTTCACTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGACCTGAATGGTACCTCCCCGATAGACACCAGCAGTTCACTAGT  150

seq1  GAGTTTCAGGCTTGAAGGCTGCGGTGTGCGCAGGGGCTGTGCCTGTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCAGGCTTGAAGGCTGCGGTGTGCGCAGGGGCTGTGCCTGTGTGG  200

seq1  GAGAATTAAAGCATTTGCAAGTGGGAGGGGGATCATGGTGGCAGTTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTAAAGCATTTGCAAGTGGGAGGGGGATCATGGTGGCAGTTTATG  250

seq1  TTTAAATGATCCAGGGAGAAAAAAATCCTTTGTAAGACTGATTTTAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGATCCAGGGAGAAAAAAATCCTTTGTAAGACTGATTTTAACTG  300

seq1  GGGTTATATTTAATTCCTGGATACTGAAGACTTTTAGTTAAAGGATAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATATTTAATTCCTGGATACTGAAGACTTTTAGTTAAAGGATAACA  350

seq1  TCTGAACCTGCCATCCCTTAATACATATAGAAGCCTCAGGTCCCTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCTGCCATCCCTTAATACATATAGAAGCCTCAGGTCCCTTTCCA  400

seq1  GTTCTGTATATGTACCCCATTTAAAAACCTTACAATGTTGTACTTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTATATGTACCCCATTTAAAAACCTTACAATGTTGTACTTGTTTT  450

seq1  TTCTCTGAGGTAGTAAATGGCTGGCTGAGTAACTGGGGCGCAGGAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAGGTAGTAAATGGCTGGCTGAGTAACTGGGGCGCAGGAAGGAG  500

seq1  AGGACCTGCCCCTTCTGTCTTCTCTTCTGCTAGCCTCAGACACCCTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTGCCCCTTCTGTCTTCTCTTCTGCTAGCCTCAGACACCCTGAGT  550

seq1  CAGGCGAGGGCCCACTGCTCCCTTGGTGGGTACTGAGTGGGTGTTAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGAGGGCCCACTGCTCCCTTGGTGGGTACTGAGTGGGTGTTAAGCA  600

seq1  CTGTTTGTTTTATTATTACCTGACTGTGTGGGGGTGCTTTGTCTAATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTTTTATTATTACCTGACTGTGTGGGGGTGCTTTGTCTAATGTC  650

seq1  TTTATCACATTTGTTTATCATGTGCAGATGGAGACTACAGGAGGACTCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACATTTGTTTATCATGTGCAGATGGAGACTACAGGAGGACTCGG  700

seq1  AATCCTCTGGGAGTGGAGTTACAGCTGGTTGAGAGCCACGTGAGTGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTGGGAGTGGAGTTACAGCTGGTTGAGAGCCACGTGAGTGCTGG  750

seq1  GAATCAACCTTGGAACCTCTGGAAAAAGCGGCGAGTCAACCACAACCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAATCAACCTTGGAACCTCTGGAAAAAGCGGCGAGTCAACCAC-ACCCAT  799

seq1  CGCTCAAGCCCCATTGCTGGGCCTGGTGACAACGCATGTCA-GTCCTGCC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CGCTCAAGCCCCATTGCTGGGCCTGGTGACAACGCATGTCAGGTCCTGCC  849

seq1  TCAGCCCCC-TGAA-TGCATGTTTACAGATGTGCACCAGAGCACCTGACT  897
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCCTTGAATTGCATGTTTACAGATGTGCACCAGAGCACCTGACT  899

seq1  CAAGTTTTAAACGATCATTTTGAGCACTCCTTCTCATGGCCATTTCCCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTAAACGATCATTTTGAGCACTCCTTCTCATGGCCATTTCCCTG  949

seq1  TAAATCAGCAGAGACACTGGGGAATGGAGCAGTTTGACTCCCATGGCTG-  996
      | |||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  T-AATCAGCAGAGACACTGGGGAATGGAGCAGTTTGACTCCCATTGCTGC  998

seq1  CTGGAGTCTCCTTTACT-GCCCCGTCTGTCTTGAGCAACAC  1036
      ||||||||||| ||||| |||||||||||| ||||||||||
seq2  CTGGAGTCTCC-TTACTGGCCCCGTCTGTC-TGAGCAACAC  1037