BAC Information

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BAC

Clone NameB6Ng01-287B04
Chromosome11 (Build37)
Map Location 37,579,167 - 37,680,618
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2, LOC100039148
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287B04.bB6Ng01-287B04.g
ACCGA085099GA085100
length1,1331,206
definitionB6Ng01-287B04.b B6Ng01-287B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,579,167 - 37,580,276)(37,679,403 - 37,680,618)
sequence
gaattcacgaaatagcatcaaactctttccacaatattttatatcaaaag
gtataatatataggcaaatataaggcttatgacatgcatttcaataaaat
ttatgaaaaggtgccaaacagtagaaatagttaaggctttctaaagtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtatgaaat
ctttacatactttatataaataactacaatggatattagttacactgtga
ctaattgtagtttacatgaaaatcactaccaatattatcacaattatgac
agtttagttacctctgaaacctaggctggttctgttgtaaaacctatctt
tctaaaaaaataaaaaataataaaaaaaaacatttgtagcaacattttta
gttaaaaaaataacatcatggaaattttcaaatgtaaggaacaaagcaaa
acaaaacattaagggaaagggaatttatttcacttccccaaagccaggaa
tagtgacatacagctgggatccttgcacagaggaggcagctcaaggagac
caagagttcttaaccagcctaggctactgcctgtgatgctgttttaaagg
aaacaaaggaaaaataaataaaataggaaaactggttgctctgtttcata
gaacagcctgtgaccatgagtttgtcattgtatatcattgtatcattagt
tatcatccaggaacttgactgtagtatttccctggatgaagaaactcttc
tactatgttttccacagatttttcttcttagatgttttgcttaactaatt
gaattctggggctggatcattgtgatttctcttgtctgtttctctaggtg
cgagttcttagaaagcttgggcacagcatcctgcttttcactcttttccc
attctgagatacttgccacctggatcagagtgaggaaaagctccacaatg
gctatctgttggaagtttgttaagttgttcgttttttaataatctctttt
tttcacattttttaaaattcaaggtttgcatagaaacattgatgacatgt
caccttctattttttggaatcaatcttcatgcgtaaaaaaaaaaaaactt
tctgtgttctgaccattagttggcaaattcttc

gaattctctcctcgtctataaacttctatttcttttaagatttgatgcaa
ctccatctcctacatttcatattttgtttttcttcagagcccagaccaga
tcagagccatgtgtgtgcaggcatttagcatgccatctgctaatctccat
ggctacgtttacaacgtcattacataattacctgtttattgtttccactc
ccccactagagtgatgtttttgtttctgtttttaaataattgactgtttt
ttgttatggcgatactaattggttctttttttaaatagccacctggtata
attcctctttgcagcatttttaagaataatttctattctatattttagat
gtgatttcatcatttctctttgcaatatgctaatcacaatcagtttaaag
tcatctttgttgtgtacattaagactgttacatttccatcctactggagt
aaattgctcacctggttcttggttttctattttctaatcttggaatattt
tctaaatagatatagaattggggatctaaatttcatcttcattggtaact
ttccttcaacctgtagcaatctgcctgttaactggtcctcctagtcttat
ctctatggcttagaatttctgtcttatgcccataacttgtcccaagacct
gagggcagcctggacacagagactgtgacttttaatttaggttctggcat
ccctctctcacatcctaggatgagaacgactggaccagtgtgtattttta
gaaaatgaattttgatgccccaggaaggacagggcaactttagctccagt
tcctcaatagatgtataactgtcaccctttctttctattatgaattacaa
agctgagcctcagctagcactttgtatacattttgctccacttttggttt
tcaaattctttattctattttctcagatatttgcaagtgtgtgtgtgtgt
gtgtgtgtgtccacctgtatgtgtcatatgtactaatgagtttgggtgta
taccacatatgtgtgccacatgatgtgaaactgggtcttgaaactgggtc
ctcatatggagcctgagctacttgttaggcagaacagtgactttaggtct
actttctttgcccatggtgccttggttatagacatctaaggctgtgccct
gctcaatgaatcgtattccatgccgaatctaaggcttgtaccagtagact
ttaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37579167_37580276
seq2: B6Ng01-287B04.b_48_1180

seq1  GAATTCACGAAATAGCATCAAACTCTTTCCACAATATTTTATATCAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGAAATAGCATCAAACTCTTTCCACAATATTTTATATCAAAAG  50

seq1  GTATAATATATAGGCAAATATAAGGCTTATGACATGCATTTCAATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATATATAGGCAAATATAAGGCTTATGACATGCATTTCAATAAAAT  100

seq1  TTATGAAAAGGTGCCAAACAGTAGAAATAGTTAAGGCTTTCTAAAGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAAAGGTGCCAAACAGTAGAAATAGTTAAGGCTTTCTAAAGTGTG  150

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGTGTATGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGTGTATGAAAT  200

seq1  CTTTACATACTTTATATAAATAACTACAATGGATATTAGTTACACTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATACTTTATATAAATAACTACAATGGATATTAGTTACACTGTGA  250

seq1  CTAATTGTAGTTTACATGAAAATCACTACCAATATTATCACAATTATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTAGTTTACATGAAAATCACTACCAATATTATCACAATTATGAC  300

seq1  AGTTTAGTTACCTCTGAAACCTAGGCTGGTTCTGTTGTAAAACCTATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGTTACCTCTGAAACCTAGGCTGGTTCTGTTGTAAAACCTATCTT  350

seq1  TCTAAAAAAATAAAAAATAATAAAAAAAAACATTTGTAGCAACATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAAATAAAAAATAATAAAAAAAAACATTTGTAGCAACATTTTTA  400

seq1  GTTAAAAAAATAACATCATGGAAATTTTCAAATGTAAGGAACAAAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAAATAACATCATGGAAATTTTCAAATGTAAGGAACAAAGCAAA  450

seq1  ACAAAACATTAAGGGAAAGGGAATTTATTTCACTTCCCCAAAGCCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATTAAGGGAAAGGGAATTTATTTCACTTCCCCAAAGCCAGGAA  500

seq1  TAGTGACATACAGCTGGGATCCTTGCACAGAGGAGGCAGCTCAAGGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACATACAGCTGGGATCCTTGCACAGAGGAGGCAGCTCAAGGAGAC  550

seq1  CAAGAGTTCTTAACCAGCCTAGGCTACTGCCTGTGATGCTGTTTTAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTCTTAACCAGCCTAGGCTACTGCCTGTGATGCTGTTTTAAAGG  600

seq1  AAACAAAGGAAAAATAAATAAAATAGGAAAACTGGTTGCTCTGTTTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGGAAAAATAAATAAAATAGGAAAACTGGTTGCTCTGTTTCATA  650

seq1  GAACAGCCTGTGACCATGAGTTTGTCATTGTATATCATTGTATCATTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCTGTGACCATGAGTTTGTCATTGTATATCATTGTATCATTAGT  700

seq1  TATCATCCAGGAACTTGACTGTAGTATTTCCCTGGATGAAGAAACTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCAGGAACTTGACTGTAGTATTTCCCTGGATGAAGAAACTCTTC  750

seq1  TACTATGTTTTCCACAGATTTTTCTTCTTAGATGTTTTGCTTAACTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTTTTCCACAGATTTTTCTTCTTAGATGTTTTGCTTAACTAATT  800

seq1  GAATTCTGGGGCTGGATCATTGTGATTTCTCTTGTCTGTTTCTCTAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGCTGGATCATTGTGATTTCTCTTGTCTGTTTCTCTAGGTG  850

seq1  CGAGTTCCTAGAAAGCT--GGCACAGCATCCTGC-TTTCACTC-TTTCCA  896
      ||||||| |||||||||  ||||||||||||||| |||||||| ||||| 
seq2  CGAGTTCTTAGAAAGCTTGGGCACAGCATCCTGCTTTTCACTCTTTTCCC  900

seq1  ATTCTGAGATAC-TGCCAC--TGATCAGAGTGAGGAAAAGCTCCACAATG  943
      |||||||||||| ||||||   ||||||||||||||||||||||||||||
seq2  ATTCTGAGATACTTGCCACCTGGATCAGAGTGAGGAAAAGCTCCACAATG  950

seq1  GCTATCTGTT-GAAGTTTGTT-AGTTGTTTGTTTTTTAATAATCTC-TTT  990
      |||||||||| |||||||||| ||||||| |||||||||||||||| |||
seq2  GCTATCTGTTGGAAGTTTGTTAAGTTGTTCGTTTTTTAATAATCTCTTTT  1000

seq1  TTTCAC-TATTTTAAAAATC-AGGTTTGCATAG-AACATTGATGACATGT  1037
      |||||| | |||||||| || |||||||||||| ||||||||||||||||
seq2  TTTCACATTTTTTAAAATTCAAGGTTTGCATAGAAACATTGATGACATGT  1050

seq1  CAACTTCTATTTCT--GAATC-ATCTTCATGCCGAAAAAAAAAAAA--CT  1082
      || ||||||||| |  ||||| ||||||||||  ||||||||||||   |
seq2  CACCTTCTATTTTTTGGAATCAATCTTCATGCGTAAAAAAAAAAAAACTT  1100

seq1  TCTGTG--CTGA-CATTAGTTG--CAATTCTTC  1110
      ||||||  |||| |||||||||   ||||||||
seq2  TCTGTGTTCTGACCATTAGTTGGCAAATTCTTC  1133


seq1: chr11_37679403_37680618
seq2: B6Ng01-287B04.g_66_1271 (reverse)

seq1  CGGTAAAGTTCTTTCTGTACAAGCCTAAGGATCTGCATGTGGATACAGGA  50
      |||||||| |||    |||||||||| ||  || ||||| | ||||  ||
seq2  CGGTAAAG-TCTACTGGTACAAGCCTTAGATTCGGCATG-GAATAC--GA  46

seq1  ATCTACATGAAACCAGGCACAGCACTAGATGCCTATAAACCCAGCACCAT  100
         | |||  | |  ||||||||  |||||| |||||| |   |||||||
seq2  ---TTCATTGAGCAGGGCACAGCCTTAGATGTCTATAACCAAGGCACCAT  93

seq1  GGGCCAAAGAAAGGTAGACCCTAAAGTTCACTG-TCTGCCCTTAACAGTA  149
      ||| |||||||| ||||| ||||||| |||||| ||||||  |||||   
seq2  GGG-CAAAGAAA-GTAGA-CCTAAAG-TCACTGTTCTGCC--TAACAAGT  137

seq1  AGCTTCAGGCTCCATATGA-GACCCAGTTTCAAGACCCAGTTTCACATCA  198
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGC-TCAGGCTCCATATGAGGACCCAGTTTCAAGACCCAGTTTCACATCA  186

seq1  TGT-GCACACATATGT-GTATACACCCAAACTCATAAGTACATATGACAC  246
      ||| |||||||||||| |||||||||||||||||| ||||||||||||||
seq2  TGTGGCACACATATGTGGTATACACCCAAACTCATTAGTACATATGACAC  236

seq1  ATACAGGTGGACACACACACACACACACACACACTTGCAAATATCTGAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGTGGACACACACACACACACACACACACTTGCAAATATCTGAGA  286

seq1  AAATAGAATAAAGAATTTGAAAACCAAAAGTGGAGCAAAATGTATACAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAATAAAGAATTTGAAAACCAAAAGTGGAGCAAAATGTATACAAA  336

seq1  GTGCTAGCTGAGGCTCAGCTTTGTAATTCATAATAGAAAGAAAGGGTGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGCTGAGGCTCAGCTTTGTAATTCATAATAGAAAGAAAGGGTGAC  386

seq1  AGTTATACATCTATTGAGGAACTGGAGCTAAAGTTGCCCTGTCCTTCCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATACATCTATTGAGGAACTGGAGCTAAAGTTGCCCTGTCCTTCCTG  436

seq1  GGGCATCAAAATTCATTTTCTAAAAATACACACTGGTCCAGTCGTTCTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCAAAATTCATTTTCTAAAAATACACACTGGTCCAGTCGTTCTCA  486

seq1  TCCTAGGATGTGAGAGAGGGATGCCAGAACCTAAATTAAAAGTCACAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGATGTGAGAGAGGGATGCCAGAACCTAAATTAAAAGTCACAGTC  536

seq1  TCTGTGTCCAGGCTGCCCTCAGGTCTTGGGACAAGTTATGGGCATAAGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCCAGGCTGCCCTCAGGTCTTGGGACAAGTTATGGGCATAAGAC  586

seq1  AGAAATTCTAAGCCATAGAGATAAGACTAGGAGGACCAGTTAACAGGCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTAAGCCATAGAGATAAGACTAGGAGGACCAGTTAACAGGCAG  636

seq1  ATTGCTACAGGTTGAAGGAAAGTTACCAATGAAGATGAAATTTAGATCCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTACAGGTTGAAGGAAAGTTACCAATGAAGATGAAATTTAGATCCC  686

seq1  CAATTCTATATCTATTTAGAAAATATTCCAAGATTAGAAAATAGAAAACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTATATCTATTTAGAAAATATTCCAAGATTAGAAAATAGAAAACC  736

seq1  AAGAACCAGGTGAGCAATTTACTCCAGTAGGATGGAAATGTAACAGTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAGGTGAGCAATTTACTCCAGTAGGATGGAAATGTAACAGTCTT  786

seq1  AATGTACACAACAAAGATGACTTTAAACTGATTGTGATTAGCATATTGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACACAACAAAGATGACTTTAAACTGATTGTGATTAGCATATTGCA  836

seq1  AAGAGAAATGATGAAATCACATCTAAAATATAGAATAGAAATTATTCTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATGATGAAATCACATCTAAAATATAGAATAGAAATTATTCTTA  886

seq1  AAAATGCTGCAAAGAGGAATTATACCAGGTGGCTATTTAAAAAAAGAACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTGCAAAGAGGAATTATACCAGGTGGCTATTTAAAAAAAGAACC  936

seq1  AATTAGTATCGCCATAACAAAAAACAGTCAATTATTTAAAAACAGAAACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTATCGCCATAACAAAAAACAGTCAATTATTTAAAAACAGAAACA  986

seq1  AAAACATCACTCTAGTGGGGGAGTGGAAACAATAAACAGGTAATTATGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCACTCTAGTGGGGGAGTGGAAACAATAAACAGGTAATTATGTA  1036

seq1  ATGACGTTGTAAACGTAGCCATGGAGATTAGCAGATGGCATGCTAAATGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTTGTAAACGTAGCCATGGAGATTAGCAGATGGCATGCTAAATGC  1086

seq1  CTGCACACACATGGCTCTGATCTGGTCTGGGCTCTGAAGAAAAACAAAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACACATGGCTCTGATCTGGTCTGGGCTCTGAAGAAAAACAAAAT  1136

seq1  ATGAAATGTAGGAGATGGAGTTGCATCAAATCTTAAAAGAAATAGAAGTT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGTAGGAGATGGAGTTGCATCAAATCTTAAAAGAAATAGAAGTT  1186

seq1  TATAGACGAGGAGAGAATTC  1216
      ||||||||||||||||||||
seq2  TATAGACGAGGAGAGAATTC  1206


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