MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-287G20
Chromosome	11 (Build37)
Map Location	33,450,562 - 33,624,549
singlet/doublet	doublet
Overlap gene	Gabrp, D130052B06Rik, Kcnip1
Upstream gene	Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269
Downstream gene	Kcnmb1, Lcp2, Foxi1, Dock2, EG574403, Dock2, Ccdc99
Link	Open Mouse BAC browser

Click to get alignment info.

name	Stk10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20868 MGI:1099439
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fbxw11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103583 MGI:2144023
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666616 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666616
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	1700008A04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69351 MGI:1916601
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC666620 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666620
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	LOC670035 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC432548 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:432548
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 mRNAs, 2332 ESTs, 13 Proteins

name	Fgf18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14172 MGI:1277980
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Npm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18148 MGI:106184
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666646 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666646
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 38 ESTs, 6 Proteins pseudo : _no_value

name	Tlx3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27140 MGI:1351209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ranbp17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66011 MGI:1929706
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666258 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666258
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins pseudo : _no_value

name	Anp32c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:448829 MGI:3525200
definition	gene_synonym : Anp32cl note : acidic leucine-rich nuclear phosphoprotein 32 family member C pseudo : _no_value

name	LOC669306 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669306
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 48 ESTs, 3 Proteins pseudo : _no_value

name	LOC666269 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 13 Proteins pseudo : _no_value

name	Gabrp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216643 MGI:2387597
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D130052B06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216644 MGI:2685092
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70357 MGI:1917607
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnmb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16533 MGI:1334203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lcp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16822 MGI:1321402
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxi1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14233 MGI:1096329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dock2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94176 MGI:2149010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG574403 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:574403 MGI:3643491
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dock2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94176 MGI:2149010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc99 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70385 MGI:1917635
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stk10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126362972 GeneID:20868 MGI:1099439
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine/threonine kinase 10 transcript_id : NM_009288.2

name	Fbxw11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129917 GeneID:103583 MGI:2144023
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box and WD-40 domain protein 11 transcript_id : NM_134015.2

name	1700008A04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94389934 GeneID:69351 MGI:1916601
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 1700008A04 gene, transcript variant 1 transcript_id : XM_126070.5

name	LOC670035 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261661 GeneID:670035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to Mnn4p transcript_id : XM_001478417.1

name	LOC432548 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261696 GeneID:432548
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 mRNAs, 2332 ESTs, 13 Proteins product : similar to 37kDa oncofetal antigen transcript_id : XM_484006.5

name	Fgf18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679780 GeneID:14172 MGI:1277980
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibroblast growth factor 18 transcript_id : NM_008005.1

name	Npm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357495 GeneID:18148 MGI:106184
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleophosmin 1 transcript_id : NM_008722.2

name	Tlx3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9910537 GeneID:27140 MGI:1351209
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-cell leukemia, homeobox 3 transcript_id : NM_019916.1

name	Ranbp17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13249348 GeneID:66011 MGI:1929706
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAN binding protein 17 transcript_id : NM_023146.1

name	Gabrp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131004 GeneID:216643 MGI:2387597
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA-A) receptor, pi transcript_id : NM_146017.3

name	Kcnip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27754024 GeneID:70357 MGI:1917607
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Kv channel-interacting protein 1 transcript_id : NM_027398.2

name	Kcnmb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381129 GeneID:16533 MGI:1334203
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium large conductance calcium-activated channel, subfamily M, beta member 1 transcript_id : NM_031169.3

name	Lcp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130099 GeneID:16822 MGI:1321402
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lymphocyte cytosolic protein 2 transcript_id : NM_010696.3

name	Foxi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802758 GeneID:14233 MGI:1096329
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box I1 transcript_id : NM_023907.3

name	Dock2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117553624 GeneID:94176 MGI:2149010
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dedicator of cyto-kinesis 2 transcript_id : NM_033374.2

name	EG574403 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701577 GeneID:574403 MGI:3643491
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG574403 transcript_id : NM_001025382.1

name	Dock2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117553624 GeneID:94176 MGI:2149010
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dedicator of cyto-kinesis 2 transcript_id : NM_033374.2

name	Ccdc99 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22296586 GeneID:70385 MGI:1917635
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 99 transcript_id : NM_027411.1

name	Stk10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126362973 CCDS:CCDS24529.1 GeneID:20868 MGI:1099439
definition	EC_number : 2.7.11.1 GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence TAS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : germ cell kinase 1; lymphocyte-oriented kinase; serine/threonine-protein kinase 10 product : serine/threonine kinase 10 protein_id : NP_033314.2

name	Fbxw11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956270 GeneID:103583 MGI:2144023
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : F-box and WD-40 domain protein 1B product : F-box and WD-40 domain protein 11 protein_id : NP_598776.1

name	1700008A04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82933803 GeneID:69351 MGI:1916601
definition	codon_start : 1 product : hypothetical protein LOC69351 isoform 1 protein_id : XP_126070.3

name	LOC670035 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261662 GeneID:670035
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478467.1

name	LOC432548 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:51766344 GeneID:432548
definition	codon_start : 1 product : hypothetical protein protein_id : XP_484006.1

name	Fgf18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679781 CCDS:CCDS24531.1 GeneID:14172 MGI:1277980
definition	GO_function : GO:0005104 - fibroblast growth factor receptor binding [Evidence TAS]; GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0030324 - lung development [Evidence IMP]; GO:0001503 - ossification [Evidence IMP]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 function : stimulates hepatic and intestinal proliferation product : fibroblast growth factor 18 protein_id : NP_032031.1

name	Npm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679108 CCDS:CCDS24532.1 GeneID:18148 MGI:106184
definition	GO_component : GO:0005813 - centrosome [Evidence ISS]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0051059 - NF-kappaB binding [Evidence ISS]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA]; GO:0019843 - rRNA binding [Evidence IDA]; GO:0051082 - unfolded protein binding [Evidence ISS] GO_process : GO:0007569 - cell aging [Evidence ISS]; GO:0007098 - centrosome cycle [Evidence ISS]; GO:0006886 - intracellular protein transport [Evidence ISS]; GO:0008285 - negative regulation of cell proliferation [Evidence ISS]; GO:0006913 - nucleocytoplasmic transport [Evidence ISS]; GO:0008104 - protein localization [Evidence IMP]; GO:0043516 - regulation of DNA damage response, signal transduction by p53 class mediator [Evidence IGI] codon_start : 1 note : nucleolar protein NO38 product : nucleophosmin 1 protein_id : NP_032748.1

name	Tlx3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910538 CCDS:CCDS24533.1 GeneID:27140 MGI:1351209
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0001708 - cell fate specification [Evidence IMP] [Evidence IGI]; GO:0007417 - central nervous system development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0045665 - negative regulation of neuron differentiation [Evidence IGI]; GO:0030182 - neuron differentiation [Evidence IMP]; GO:0048665 - neuron fate specification [Evidence IGI]; GO:0001764 - neuron migration [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007585 - respiratory gaseous exchange [Evidence IMP] codon_start : 1 exception : mismatches in translation note : respiratory neuron homeobox; homeo box 11-like 2 product : T-cell leukemia, homeobox 3 protein_id : NP_064300.1

name	Ranbp17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13249349 CCDS:CCDS24534.1 GeneID:66011 MGI:1929706
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0008565 - protein transporter activity [Evidence IEA]; GO:0008536 - Ran GTPase binding [Evidence TAS] GO_process : GO:0006913 - nucleocytoplasmic transport [Evidence TAS]; GO:0000059 - protein import into nucleus, docking [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAN binding protein 17 protein_id : NP_075635.1

name	Gabrp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122485 CCDS:CCDS24535.1 GeneID:216643 MGI:2387597
definition	GO_component : GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA] codon_start : 1 product : gamma-aminobutyric acid (GABA-A) receptor, pi protein_id : NP_666129.1

name	Kcnip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754025 CCDS:CCDS24537.1 GeneID:70357 MGI:1917607
definition	GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : A-type potassium channel modulatory protein 1.2; potassium channel interacting protein 1 product : Kv channel-interacting protein 1 protein_id : NP_081674.2

name	Kcnmb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981659 CCDS:CCDS24538.1 GeneID:16533 MGI:1334203
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : BK channel beta subunit product : potassium large conductance calcium-activated channel, subfamily M, beta member 1 protein_id : NP_112446.2

name	Lcp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543115 GeneID:16822 MGI:1321402
definition	GO_process : GO:0050663 - cytokine secretion [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0045576 - mast cell activation [Evidence IMP] codon_start : 1 product : lymphocyte cytosolic protein 2 protein_id : NP_034826.2

name	Foxi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229265 CCDS:CCDS24539.1 GeneID:14233 MGI:1096329
definition	GO_component : GO:0005634 - nucleus [Evidence IC]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0043565 - sequence-specific DNA binding [Evidence IDA] [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007605 - sensory perception of sound [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : forkhead homolog 10; HNF-3/forkhead homolog 3 product : forkhead box I1 protein_id : NP_076396.2

name	Dock2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117553625 GeneID:94176 MGI:2149010
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0051020 - GTPase binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0030675 - Rac GTPase activator activity [Evidence IMP] GO_process : GO:0046631 - alpha-beta T cell activation [Evidence IMP]; GO:0046633 - alpha-beta T cell proliferation [Evidence IMP]; GO:0006935 - chemotaxis [Evidence IMP]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IDA]; GO:0001768 - establishment of T cell polarity [Evidence IMP]; GO:0001771 - formation of immunological synapse [Evidence IMP]; GO:0001766 - lipid raft polarization [Evidence IMP]; GO:0045060 - negative thymic T cell selection [Evidence IMP]; GO:0035022 - positive regulation of Rac protein signal transduction [Evidence IC]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0042110 - T cell activation [Evidence IMP]; GO:0042098 - T cell proliferation [Evidence IMP] codon_start : 1 exception : unclassified translation discrepancy product : dedicator of cyto-kinesis 2 protein_id : NP_203538.2

name	EG574403 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701578 GeneID:574403 MGI:3643491
definition	codon_start : 1 product : hypothetical protein LOC574403 protein_id : NP_001020553.1

name	Dock2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117553625 GeneID:94176 MGI:2149010
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0051020 - GTPase binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0030675 - Rac GTPase activator activity [Evidence IMP] GO_process : GO:0046631 - alpha-beta T cell activation [Evidence IMP]; GO:0046633 - alpha-beta T cell proliferation [Evidence IMP]; GO:0006935 - chemotaxis [Evidence IMP]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IDA]; GO:0001768 - establishment of T cell polarity [Evidence IMP]; GO:0001771 - formation of immunological synapse [Evidence IMP]; GO:0001766 - lipid raft polarization [Evidence IMP]; GO:0045060 - negative thymic T cell selection [Evidence IMP]; GO:0035022 - positive regulation of Rac protein signal transduction [Evidence IC]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0042110 - T cell activation [Evidence IMP]; GO:0042098 - T cell proliferation [Evidence IMP] codon_start : 1 exception : unclassified translation discrepancy product : dedicator of cyto-kinesis 2 protein_id : NP_203538.2

name	Ccdc99 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22296587 CCDS:CCDS24541.1 GeneID:70385 MGI:1917635
definition	codon_start : 1 exception : mismatches in translation product : coiled-coil domain containing 99 protein_id : NP_081687.1

name	LOC666616 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666616
definition	number : 2 pseudo : _no_value

name	LOC666616 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666616
definition	number : 1 pseudo : _no_value

name	LOC666620 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666620
definition	number : 1 pseudo : _no_value

name	LOC666258 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666258
definition	number : 1 pseudo : _no_value

name	LOC666646 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261697 GeneID:666646
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 38 ESTs, 6 Proteins product : similar to single-stranded DNA binding protein 1 pseudo : _no_value transcript_id : XR_034477.1

name	LOC669306 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261699 GeneID:669306
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 48 ESTs, 3 Proteins product : similar to intersex-like pseudo : _no_value transcript_id : XR_034488.1

name	LOC666269 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261698 GeneID:666269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 13 Proteins product : similar to Ac2-008 pseudo : _no_value transcript_id : XR_034484.1

name	D130052B06Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149261596 GeneID:216644 MGI:2685092
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D130052B06 gene transcript_id : XR_035087.1

clone name	MSMg01-059J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508J19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-098D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344I01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-424K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168M12
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-287G20.b	B6Ng01-287G20.g
ACC	GA085357	GA085358
length	1,208	772
definition	B6Ng01-287G20.b	B6Ng01-287G20.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(33,623,351 - 33,624,549)	(33,450,562 - 33,451,324)
sequence	gaattcaaccatctgtttccttgtagtctgaaccctccagagctagaaag ggcaccccccagcttctcagcttggaaggactgtccccgacacacccctg atatggtcatgactcctcagcaatggttatgggaacacgatgacacggtt acatccacaccccagattttcaagcggatgctttccatcttaggaaaacc cccacttgttagcaaagaccaagtgccactcttcccaggtcctagggcta gtcagagcttggtcaagaggagagagcatttttatgggtcagacagtgag gtgcatttgcccagagccttaaatgttctgcacacattattgaaacccac ccctatcacctcattttgtccgtaggctcacagatatgtaaccctgactt aaagggacagagttggcacatcaggctgtcccagatgtaagtcctccatg tgggcagtagccagctgctcacatccaaccaccacatatgcacacagtga tgtaagcagttattaaaacacagtgaaacagaaccctttgaagtaaaggg cacatgcacagccacattgctcacaccttacgcgcttcccagctacatcc tatccatatgtacttagtgcaaagaggcactgttctctcaggaaccacca gcccagctgtgacattcaagagctgtagcttcctcccagatcctcagcta ccagcaaggtttcctacccagaagcagctaccccagggcacacatccact ggctttctccctggattattacaggagcccctctcacactccctccaccc tgaaccccacccccatctctttcagcctagagcgtcttggcttcttttaa ctgtgtcaagaacaactcccttcacccacgattcccacaatcacactata aagtctctcactgatattgttaaatttcttttaaaacagctctctgggta taaatttcactttactattttatgaaaagggaaatcaagttttgccacct cacgagatgggtggtgtttatttattttacctaaaggatgggatcacggc tgattgttcattatgcagacacaagagcatctctcagaggatttgacagt acctcctatctatggagctccaagaagaccccaaggcatagaacatgtat gtactggcagaggctatttcaagcccatctcagaatacctgttgtgaaat tctctcct	gaattccaatgttgtctcctactatccaaagagcagcgtggctctaaaat ctaaaggttgcctctctcccaaaaactactctcatactaaaaattgtatt tcttctcatgtgtgaatgtgaatgtgtgctgtctggggtggacgcggtat ggagacactctattagcactatactatgtatcttttgtattattctgcag tcaccacccagtagctcatactatatatttattttatagtttcacatatt tacaacttttatttttctgtagcttaaaatgaggcctcagtgaagttata ttttaaacatttttatttttaaaaaaaaatgcacaggtatgacctactca ctcaaccacacttcccctcccctagcccctccccttaggaatgtatatga cagatacaaaatacaaagagattctactaagaactctaatggcgcaacta cacctattgtactccaatgaacaaagcgaatcctaaaatagaaacatctg ttaagcgccaggcactcaagctcacagaaacggaacgatgggcagagcca tgctgatgaaaaggagggcccgtgggtgaaggacgtgaaaggaaagaaca tctacagcccccggtttgtttgtagaaaggacagggaaaagctgagggtt cattaaaaaaaggaagggaaaagacctgaagacagcaagagtctttgaaa acaattgaggctgcatttggaaccttatataggcgattcccgtgggagca gagaagagagaggggcacacaa
quality values	Open. Hide. 58 26 28 34 58 26 24 54 54 31 20 62 62 46 62 62 62 62 62 62 62 62 62 54 51 62 62 62 62 54 62 62 42 51 50 38 34 20 19 22 44 59 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 59 59 62 59 59 56 54 56 56 62 62 62 62 59 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 54 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 49 62 56 51 62 56 56 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 54 62 58 58 58 58 58 58 58 52 54 42 42 58 58 58 58 49 58 58 58 58 58 58 58 58 58 54 54 58 58 54 58 58 58 58 58 58 58 58 52 54 49 58 58 58 58 58 52 54 52 58 58 58 58 52 54 54 58 58 58 52 58 54 58 54 58 54 58 54 54 52 52 58 58 58 58 58 51 52 58 58 58 58 41 50 58 48 38 58 46 45 54 51 31 58 58 58 41 54 58 58 42 53 54 53 53 58 41 52 54 51 58 50 58 52 58 53 51 58 58 50 58 47 44 50 37 39 38 54 53 58 51 47 51 53 41 46 19 51 50 50 42 50 40 40 50 50 52 53 58 35 39 40 44 51 49 50 50 24 22 39 53 51 41 40 58 42 53 32 49 52 58 50 49 39 51 49 49 52 53 53 39 58 40 50 49 49 40 39 51 42 53 49 32 49 50 37 40 49 45 39 52 50 19 54 51 24 54 38 49 53 53 30 39 30 35 32 32 33 32 34 53 42 39 42 41 37 38 54 54 42 32 29 54 54 26 45 26 33 53 34 53 41 38 37 47 37 45 33 26 53 54 39 37 45 31 54 44 32 37 30 22 10 53 30 21 28 30 37 29 20 40 28 18 46 52 49 46 38 32 40 33 27 32 34 45 45 39 51 26 31 40 32 31 32 51 45 29 32 33 33 24 52 51 40 32 32 49 46 51 33 29 38 25 25 25 46 51 31 32 39 31 33 33 29 33 11 38 23 43 36 31 32 46 11 23 37 34 33 12 18 21 46 46 12 32 19 31 31 46 22 32 11 22 31 26 33 35 30 30 29 38 38 43 24 42 21 6 20 31 28 31 46 28 23 34 27 33 18 42 31 46 31 31 32 35 27 32 30 19 25 23 32 37 37 32 32 39 25 27 27 33 28 38 30 35 22 25 26 42 32 8 10 7 10 14 5 7 31 46 25 18 48 34 24 17 44 43 17 31 36 44 22 24 16 33 32 31 18 13 13 17 18 47 19 16 23 26 25 36 27 17 43 9 23 17 31 31 48 31 24 20 10 23 21 37 31 6 4 9 10 17 34 48 32 7 39 10 34 37 28 34 22 11 11 18 27 43 34 12 20 21 6 4 5 9 18 22 19 32 18 32 14 11 9 19 34 29 6 15 23 12 21 27 31 6 11 20 29 14 8 16 17 19 26 5 15 21 18 15 34 18 21 14 18 18 4 27 13 11 16 27 14 14 17 18 18 17 8 11 3 8 11 8 8 21 24 5 10 5 22 21 19 6 4 3 6 6 12 10 9 7 23 10 28 9 7 4 5 4 5 5 5 2 3 4 8 23 8 26 13 8 14 13 22 7 11 5 5 6 20 6 8 22 10 19 5 4 4 15 12 7 8 4 4 4 18 13 12 8 7 20 7 7 13 4 8 10 6 3 2 1 4 21 7 11 16 9 20 20 16 5 5 2 2 3 12 13 4 2 2 1 10 2 1 3 1 3 5 2 1 3 11 3 1 3 2 2 5 21 5 7 12 4 3 1 4 8 8 6 18 19 4 11 6 8 6 11 10 10 6 5 4 3 6 15 4 8 5 10 4 3 4 14 5	Open. Hide. 62 49 42 42 62 62 41 24 62 62 62 51 38 24 28 45 45 46 38 29 59 59 59 59 62 62 38 32 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 50 56 59 59 62 59 59 56 56 56 59 62 59 62 62 59 59 59 59 59 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 35 56 54 27 34 41 59 59 59 59 56 54 56 49 49 21 19 34 17 11 19 13 34 36 34 43 56 54 46 56 36 54 48 46 51 39 38 27 17 13 12 10 11 11 13 39 59 18 30 13 22 27 23 46 49 50 49 49 40 59 51 49 51 51 24 24 23 13 36 27 43 34 56 49 40 50 51 41 51 26 41 13 17 15 16 18 23 23 21 30 39 39 20 20 34 43 43 59 59 17 12 18 8 17 17 39 46 51 49 49 49 46 56 59 59 59 46 36 24 51 43 38 49 30 36 34 20 38 17 18 27 34 24 39 23 23 19 18 19 30 25 43 43 39 14 7 19 19 23 34 24 32 23 8 8 11 12 16 14 19 34 35 21 20 29 44 44 62 56 44 18 22 14 34 18 22 32 24 24 34 22 8 11 23 18 13 22 13 13 17 13 34 38 39 51 44 24 31 38 19 14 32 32 37 32 42 44 39 24 38 50 32 26 23 20 24 30 32 22 38 44 24 35 25 39 24 28 37 24 29 20 20 22 22 35 37 14 24 20 14 20 27 20 51 56 41 10 27 39 51 42 42 26 56 42 39 50 43 51 32 35 32 51 25 31 42 32 26 31 24 19 18 42 12 22 14 10 14 15 21 30 41 32 11 22 27 26 23 21 13 26 22 38 23 41 31 39 42 34 27 26 42 23 30 31 24 56 24 10 39 24 16 10 21 14 27 22 31 11 39 56 33 56 47 41 52 27 18 26 15 21 24 30 31 43 41 49 43 28 28 35 35 27 32 47 8 25 10 19 17 13 14 10 13 14 18 16 11 14 9 17 8 8 19 9 9 19 10 10 12 24 39 35 8 12 9 9 22 9 27 14 9 13 8 16 8 27 18 35 15 32 32 23 14 18 23 20 22 9 19

Alignment Information

BAC End 1

BAC End 2

seq1: chr11_33623351_33624549
seq2: B6Ng01-287G20.b_45_1252 (reverse)

seq1  AGGAGAGAATTTC-CAACAG--TTTCTGAAATGGCCTT-AAATATACCTC  46
      ||||||||||||| ||||||   |||||| |||| ||| |||||  ||||
seq2  AGGAGAGAATTTCACAACAGGTATTCTGAGATGGGCTTGAAATA-GCCTC  49

seq1  TTCCACTACATACATG-TCTATGCTATGTGGTTCTCTTGGGACT-CATAG  94
      | ||| |||||||||| |||||||  || |||  ||||||  || |||||
seq2  TGCCAGTACATACATGTTCTATGCCTTGGGGTCTTCTTGGAGCTCCATAG  99

seq1  AATAAGAAGTACTTGTCAAAT-CTCT--GAGATGCTC-TGTGTCCTGCAA  140
       ||| || |||| |||||||| ||||  ||||||||| ||||| |||| |
seq2  -ATAGGAGGTAC-TGTCAAATCCTCTGAGAGATGCTCTTGTGT-CTGC-A  145

seq1  TATTGACAATTCAGCCGTGATCCAATCCTTTAGGTAAAAATAAATAAACA  190
      || |||  | ||||||||||||| ||||||||||| ||||||||||||||
seq2  TAATGAACAATCAGCCGTGATCCCATCCTTTAGGT-AAAATAAATAAACA  194

seq1  -CACCCATCTCGTGA-GTGCAAAAACTTGATTT-CCTTTTCAATAAATAG  237
       |||||||||||||| |||  |||||||||||| ||||||||  ||||||
seq2  CCACCCATCTCGTGAGGTGGCAAAACTTGATTTCCCTTTTCATAAAATAG  244

seq1  TAAAGTGAAATTTATA-CCAGAGAGCTGTTTTAAAAGAAATTT-ACAATA  285
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  TAAAGTGAAATTTATACCCAGAGAGCTGTTTTAAAAGAAATTTAACAATA  294

seq1  TCAGTGAGAGACTTTATAGTGTGATTGTGGGAATCGTGGGTGAAGGGAGT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGAGACTTTATAGTGTGATTGTGGGAATCGTGGGTGAAGGGAGT  344

seq1  TGTTCTTGACACAGTTAAAAGAAGCCAAGACGCTCTAGGCTGAAAGAGAT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGACACAGTTAAAAGAAGCCAAGACGCTCTAGGCTGAAAGAGAT  394

seq1  GGGGGTGGGGTTCAGGGTGGAGGGAGTGTGAGAGGGGCTCCTGTAATAAT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGGGTTCAGGGTGGAGGGAGTGTGAGAGGGGCTCCTGTAATAAT  444

seq1  CCAGGGAGAAAGCCAGTGGATGTGTGCCCTGGGGTAGCTGCTTCTGGGTA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGAAAGCCAGTGGATGTGTGCCCTGGGGTAGCTGCTTCTGGGTA  494

seq1  GGAAACCTTGCTGGTAGCTGAGGATCTGGGAGGAAGCTACAGCTCTTGAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTTGCTGGTAGCTGAGGATCTGGGAGGAAGCTACAGCTCTTGAA  544

seq1  TGTCACAGCTGGGCTGGTGGTTCCTGAGAGAACAGTGCCTCTTTGCACTA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGCTGGGCTGGTGGTTCCTGAGAGAACAGTGCCTCTTTGCACTA  594

seq1  AGTACATATGGATAGGATGTAGCTGGGAAGCGCGTAAGGTGTGAGCAATG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATATGGATAGGATGTAGCTGGGAAGCGCGTAAGGTGTGAGCAATG  644

seq1  TGGCTGTGCATGTGCCCTTTACTTCAAAGGGTTCTGTTTCACTGTGTTTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGCATGTGCCCTTTACTTCAAAGGGTTCTGTTTCACTGTGTTTT  694

seq1  AATAACTGCTTACATCACTGTGTGCATATGTGGTGGTTGGATGTGAGCAG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGCTTACATCACTGTGTGCATATGTGGTGGTTGGATGTGAGCAG  744

seq1  CTGGCTACTGCCCACATGGAGGACTTACATCTGGGACAGCCTGATGTGCC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTACTGCCCACATGGAGGACTTACATCTGGGACAGCCTGATGTGCC  794

seq1  AACTCTGTCCCTTTAAGTCAGGGTTACATATCTGTGAGCCTACGGACAAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTCCCTTTAAGTCAGGGTTACATATCTGTGAGCCTACGGACAAA  844

seq1  ATGAGGTGATAGGGGTGGGTTTCAATAATGTGTGCAGAACATTTAAGGCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGATAGGGGTGGGTTTCAATAATGTGTGCAGAACATTTAAGGCT  894

seq1  CTGGGCAAATGCACCTCACTGTCTGACCCATAAAAATGCTCTCTCCTCTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAAATGCACCTCACTGTCTGACCCATAAAAATGCTCTCTCCTCTT  944

seq1  GACCAAGCTCTGACTAGCCCTAGGACCTGGGAAGAGTGGCACTTGGTCTT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGCTCTGACTAGCCCTAGGACCTGGGAAGAGTGGCACTTGGTCTT  994

seq1  TGCTAACAAGTGGGGGTTTTCCTAAGATGGAAAGCATCCGCTTGAAAATC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACAAGTGGGGGTTTTCCTAAGATGGAAAGCATCCGCTTGAAAATC  1044

seq1  TGGGGTGTGGATGTAACCGTGTCATCGTGTTCCCATAACCATTGCTGAGG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGGATGTAACCGTGTCATCGTGTTCCCATAACCATTGCTGAGG  1094

seq1  AGTCATGACCATATCAGGGGTGTGTCGGGGACAGTCCTTCCAAGCTGAGA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGACCATATCAGGGGTGTGTCGGGGACAGTCCTTCCAAGCTGAGA  1144

seq1  AGCTGGGGGGTGCCCTTTCTAGCTCTGGAGGGTTCAGACTACAAGGAAAC  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGGGTGCCCTTTCTAGCTCTGGAGGGTTCAGACTACAAGGAAAC  1194

seq1  AGATGGTTGAATTC  1199
      ||||||||||||||
seq2  AGATGGTTGAATTC  1208

seq1: chr11_33450562_33451324
seq2: B6Ng01-287G20.g_71_842

seq1  GAATTCCAATGTTGTCTCCTACTATCCAAAGAGCAGCGTGGCTCTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGTTGTCTCCTACTATCCAAAGAGCAGCGTGGCTCTAAAAT  50

seq1  CTAAAGGTTGCCTCTCTCCCAAAAACTACTCTCATACTAAAAATTGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGTTGCCTCTCTCCCAAAAACTACTCTCATACTAAAAATTGTATT  100

seq1  TCTTCTCATGTGTGAATGTGAATGTGTGCTGTCTGGGGTGGACGCGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCATGTGTGAATGTGAATGTGTGCTGTCTGGGGTGGACGCGGTAT  150

seq1  GGAGACACTCTATTAGCACTATACTATGTATCTTTTGTATTATTCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACTCTATTAGCACTATACTATGTATCTTTTGTATTATTCTGCAG  200

seq1  TCACCACCCAGTAGCTCATACTATATATTTATTTTATAGTTTCACATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACCCAGTAGCTCATACTATATATTTATTTTATAGTTTCACATATT  250

seq1  TACAACTTTTATTTTTCTGTAGCTTAAAATGAGGCCTCAGTGAAGTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTTTATTTTTCTGTAGCTTAAAATGAGGCCTCAGTGAAGTTATA  300

seq1  TTTTAAACATTTTTATTTTTAAAAAAAAATGCACAGGTATGACCTACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACATTTTTATTTTTAAAAAAAAATGCACAGGTATGACCTACTCA  350

seq1  CTCAACCACACTTCCCCTCCCCTAGCCCCTCCCCTTAGGAATGTATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCACACTTCCCCTCCCCTAGCCCCTCCCCTTAGGAATGTATATGA  400

seq1  CAGATACAAAATACAAAGAGATTCTACTAAGAACTCTAATGGCGCAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAAAATACAAAGAGATTCTACTAAGAACTCTAATGGCGCAACTA  450

seq1  CACCTATTGTACTCCAATGAACAAAGCGAATCCTAAAATAGAAACATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTGTACTCCAATGAACAAAGCGAATCCTAAAATAGAAACATCTG  500

seq1  TTAAGCGCCAGGCACTCAAGCTCACAGAAACGGAACGATGGGCAGAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCGCCAGGCACTCAAGCTCACAGAAACGGAACGATGGGCAGAGCCA  550

seq1  TGCTGATGAAAAGGAGGGCCCGTGGGTGAAGGACGTGAAAGGAAAGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGAAAAGGAGGGCCCGTGGGTGAAGGACGTGAAAGGAAAGAACA  600

seq1  TCTACAG-CCCCGGTTTG-TTGTAGAAAGGACAGGG-AAAGCTGAGGGTT  647
      ||||||| |||||||||| ||||||||||||||||| |||||||||||||
seq2  TCTACAGCCCCCGGTTTGTTTGTAGAAAGGACAGGGAAAAGCTGAGGGTT  650

seq1  CATT-AGAAAAGGAAGGG-AAAGACCTGAAGACAGCAAGAGTCTTTG-AA  694
      |||| | ||||||||||| |||||||||||||||||||||||||||| ||
seq2  CATTAAAAAAAGGAAGGGAAAAGACCTGAAGACAGCAAGAGTCTTTGAAA  700

seq1  ACAATTGAGGCTGCA-TTGGAACCTTATATAGGCGATTCCCGT-GGAGCA  742
      ||||||||||||||| ||||||||||||||||||||||||||| ||||| 
seq2  ACAATTGAGGCTGCATTTGGAACCTTATATAGGCGATTCCCGTGGGAGC-  749

seq1  AGAG-AGAGAGA-GGGCACACAA  763
      |||| ||||||| ||||||||||
seq2  AGAGAAGAGAGAGGGGCACACAA  772

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BAC

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Alignment Information