BAC Information

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BAC

Clone NameB6Ng01-287I21
Chromosome11 (Build37)
Map Location 106,795,386 - 106,975,969
singlet/doubletdoublet
Overlap geneLOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899
Upstream geneCyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2
Downstream geneNol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287I21.bB6Ng01-287I21.g
ACCGA085448GA085449
length1,129966
definitionB6Ng01-287I21.b B6Ng01-287I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,795,386 - 106,796,518)(106,975,002 - 106,975,969)
sequence
gaattccggacgtagaggcaggaggatcagacggtcaagcccatcattag
ctaacaagtcaggcctgtctgggctccttaacaatcctgtctcaagccag
accgggtggtggtacatgcctataatcccagtactcaaggggcagagaca
gaaatatctccaagttcaaggccagcctggtctatgtagtgagttccagg
acagccagggctacaaagaaacagacatacaaaaaaaaaaaaaaaaaaaa
aaaaaaaatccaggctcaaaatcaaaacaaacaaacatggtacacaaaag
ttaagaggaaaagccatgcatggtggcgcacgcctttaatcccagcactc
gggaggcagaggcaggtggatttctgtgctcgaggccagcctggtctaca
aagtgagttccaggacagccagggctatacagagaaaccctgtcttagaa
aaaaaaaaaaaactaaaactaaaacaccaaacaaaacaaaaacaaacaaa
aagttaggaggagaaccgtccagtatctgcttcttagaatggtacctctc
aaagagattctccagttttagttttactgggaacattgaaacaattattt
gttttcttaaacttctttcccactggataaaaactaggacaacagatatt
agggccctcagtgtcagacatgtctgaggtgggagtcaacaacagagaaa
gtgagatatttggaatgagaaatatctgctggagcctggggcatctgaat
gtctggtctccagttctcagcattgtttggggcgttgaggaagaggggtc
ttgctggagaaagcgtgtcactggaggcaggctgtgagagtgaaaagacc
agagagtttgctcattggtttcacagtgctgttcaaatacgaatcttgct
tctactccagccaccaggcctatttcgggctcccctcatcatggactcta
accctctggaattgaaagggataaaaaaattgttctcttctcaagttgcc
ttgtctagtcagggttgtattcctgaacaaaacatcgtggacaagaagca
gtgggaggaaagggttaatccgcttaaatttccacattgcgtgttcctca
ccaagaagtccggactggaattcagcagg
gaattcaaggccagcatggtctacagagttccaggcagcctgacctgtat
caggagagagaccctccttcagcctcgtgagctcctttcttgttagggct
gggaagtatgttcatgttgtccagtgtgtgtgagcacagtttgtgcttcc
aggccgaggcacagtcaacagtatttgttacttgcttactcaaacgctca
gaccctcagttccttagttccctgcacaccatgggagctgagggacttgg
taagggaggaggggacagaaacctaataccctttcccacagtgcgggagg
cttagtccgaatttatagaaagccagcaaacaaaggcaggccatatgtaa
attatgatctgttttttcctgggtgggggagggaacctcgtcccttgctg
tcagtgaagggtttatttaaatctcttccgagtaaaataggttcttaaaa
gtctccattttgaaagggaaaaggaacagttttgtggaatggaagatccc
accgattctcttgttggcagagttctttctgtatccacacttggtaggtg
gagagttgaagcttttccgtttcttgcctttggaattgcactctaagtgg
cagattcctgcattcctaaaattttgcaagtgaaaagagttaattgtctg
agggaaggtccgtcctcttcttccgccctgccatgctgataagtgagtgt
tacagagacttgaagaaactttgagttgcctatatatatatatatatata
tatatatatatatatatatatatatatacacacaccatatgaagaccaga
ggaaaccggtaagagagccccagcatgtagggttaccagtattgggcagc
aaacgtcctcacgcaaagagcggttcttcagcgccacttcaaggactttc
atttcttctactttgttcttattttcctgggagattgtgtttaattttat
ggtatgtgaatgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106795386_106796518
seq2: B6Ng01-287I21.b_52_1176

seq1  TCCGGACGTAGAGGCAGGAGGATCAGACGGTCAAGCCCATCATTAGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGACGTAGAGGCAGGAGGATCAGACGGTCAAGCCCATCATTAGCTAA  50

seq1  CAAGTCAGGCCTGTCTGGGCTCCTTAACAATCCTGTCTCAAGCCAGACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGGCCTGTCTGGGCTCCTTAACAATCCTGTCTCAAGCCAGACCG  100

seq1  GGTGGTGGTACATGCCTATAATCCCAGTACTCAAGGGGCAGAGACAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGTACATGCCTATAATCCCAGTACTCAAGGGGCAGAGACAGAAA  150

seq1  TATCTCCAAGTTCAAGGCCAGCCTGGTCTATGTAGTGAGTTCCAGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAAGTTCAAGGCCAGCCTGGTCTATGTAGTGAGTTCCAGGACAG  200

seq1  CCAGGGCTACAAAGAAACAGACATACAAAAAAAAAAAAAAAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACAAAGAAACAGACATACAAAAAAAAAAAAAAAAAAAAAAAA  250

seq1  AAAATCCAGGCTCAAAATCAAAACAAACAAACATGGTACACAAAAGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAGGCTCAAAATCAAAACAAACAAACATGGTACACAAAAGTTAA  300

seq1  GAGGAAAAGCCATGCATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAGCCATGCATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGA  350

seq1  GGCAGAGGCAGGTGGATTTCTGTGCTCGAGGCCAGCCTGGTCTACAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGTGGATTTCTGTGCTCGAGGCCAGCCTGGTCTACAAAGT  400

seq1  GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTAGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTAGAAAAAA  450

seq1  AAAAAAAACTAAAACTAAAACACCAAACAAAACAAAAACAAACAAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACTAAAACTAAAACACCAAACAAAACAAAAACAAACAAAAAGT  500

seq1  TAGGAGGAGAACCGTCCAGTATCTGCTTCTTAGAATGGTACCTCTCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGAGAACCGTCCAGTATCTGCTTCTTAGAATGGTACCTCTCAAAG  550

seq1  AGATTCTCCAGTTTTAGTTTTACTGGGAACATTGAAACAATTATTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCCAGTTTTAGTTTTACTGGGAACATTGAAACAATTATTTGTTT  600

seq1  TCTTAAACTTCTTTCCCACTGGATAAAAACTAGGACAACAGATATTAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACTTCTTTCCCACTGGATAAAAACTAGGACAACAGATATTAGGG  650

seq1  CCCTCAGTGTCAGACATGTCTGAGGTGGGAGTCAACAACAGAGAAAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTGTCAGACATGTCTGAGGTGGGAGTCAACAACAGAGAAAGTGA  700

seq1  GATATTTGGAATGAGAAATATCTGCTGGAGCCTGGGGCATCTGAATGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGGAATGAGAAATATCTGCTGGAGCCTGGGGCATCTGAATGTCT  750

seq1  GGTCTCCAGTTCTCAGCATTGTTTGGGGCGTTGAGGAAGAGGGGTCTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCAGTTCTCAGCATTGTTTGGGGCGTTGAGGAAGAGGGGTCTTGC  800

seq1  TGGAGAAAGCGTGTCACTGGAGGCAGGCTGTGAGAGTGAAAAGACCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGCGTGTCACTGGAGGCAGGCTGTGAGAGTGAAAAGACCAGAG  850

seq1  AGTTTGCTCATTGGTTTCACAGTGCTGTTCAAAATACGAATCTTGGCTTC  900
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  AGTTTGCTCATTGGTTTCACAGTGCTGTTC-AAATACGAATCTT-GCTTC  898

seq1  TACTCCAGCCACCAGGCCTATTTCGGGCTCCCCTCATCATGGACTCTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCAGCCACCAGGCCTATTTCGGGCTCCCCTCATCATGGACTCTAAC  948

seq1  CCTCTGGAATTGAAAGGGATAAAAAAATTG-TCTCTTCTCAAAGTTGCCT  999
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  CCTCTGGAATTGAAAGGGATAAAAAAATTGTTCTCTTCTC-AAGTTGCCT  997

seq1  TGTCTTAGTCAGGGTTTGTATTCCTGAACAAAACATCGTGACCAAGAAGC  1049
      |||| ||||||||| |||||||||||||||||||||||||  ||||||||
seq2  TGTC-TAGTCAGGG-TTGTATTCCTGAACAAAACATCGTGGACAAGAAGC  1045

seq1  AGTTGGGGAGGAAAGGGTTTATTCGGCTTACATTTCCACATTGC-TGTTC  1098
      |||  |||||||||||| ||| || ||||| ||||||||||||| |||||
seq2  AGT--GGGAGGAAAGGG-TTAATCCGCTTAAATTTCCACATTGCGTGTTC  1092

seq1  ATCACCAAGGAAGTCAGGACTGGAATTCAAGCAGG  1133
       ||||||| |||||| |||||||||||| ||||||
seq2  CTCACCAA-GAAGTCCGGACTGGAATTC-AGCAGG  1125

seq1: chr11_106975002_106975969
seq2: B6Ng01-287I21.g_66_1031 (reverse)

seq1  CAGACATGCATGCAAACAATCACATA-CATAAAA-TAAACACAA--TCCC  46
                  || ||| ||||||| ||||||| |||||||||  ||||
seq2  ------------CAGACATTCACATACCATAAAATTAAACACAATCTCCC  38

seq1  A-GAAAATAAGAACAAAGTAGAAGAAATGAAAGTCCTTGAAGTGGCGCTG  95
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATAAGAACAAAGTAGAAGAAATGAAAGTCCTTGAAGTGGCGCTG  88

seq1  -AGAA-CGCTCTTTGCGTGAAGGCGTTTGCTG-CCAATACTGGTAA-CCT  141
       |||| |||||||||||||| | ||||||||| ||||||||||||| |||
seq2  AAGAACCGCTCTTTGCGTGAGGACGTTTGCTGCCCAATACTGGTAACCCT  138

seq1  ACATGCTGGGGCTCTCCTA-CGGTTTCCTCTGGTCTTCATATGGTGTGTG  190
      |||||||||||||||| || ||||||||||||||||||||||||||||||
seq2  ACATGCTGGGGCTCTCTTACCGGTTTCCTCTGGTCTTCATATGGTGTGTG  188

seq1  TATATATATATATATATATATATATATATATATATATATATATATATAGG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATAGG  238

seq1  CAACTCAAAGTTTCTTCAAGTCTCTGTAACACTCACTTATCAGCATGGCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAAAGTTTCTTCAAGTCTCTGTAACACTCACTTATCAGCATGGCA  288

seq1  GGGCGGAAGAAGAGGACGGACCTTCCCTCAGACAATTAACTCTTTTCACT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGAAGAAGAGGACGGACCTTCCCTCAGACAATTAACTCTTTTCACT  338

seq1  TGCAAAATTTTAGGAATGCAGGAATCTGCCACTTAGAGTGCAATTCCAAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATTTTAGGAATGCAGGAATCTGCCACTTAGAGTGCAATTCCAAA  388

seq1  GGCAAGAAACGGAAAAGCTTCAACTCTCCACCTACCAAGTGTGGATACAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAAACGGAAAAGCTTCAACTCTCCACCTACCAAGTGTGGATACAG  438

seq1  AAAGAACTCTGCCAACAAGAGAATCGGTGGGATCTTCCATTCCACAAAAC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCTGCCAACAAGAGAATCGGTGGGATCTTCCATTCCACAAAAC  488

seq1  TGTTCCTTTTCCCTTTCAAAATGGAGACTTTTAAGAACCTATTTTACTCG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTTTCCCTTTCAAAATGGAGACTTTTAAGAACCTATTTTACTCG  538

seq1  GAAGAGATTTAAATAAACCCTTCACTGACAGCAAGGGACGAGGTTCCCTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATTTAAATAAACCCTTCACTGACAGCAAGGGACGAGGTTCCCTC  588

seq1  CCCCACCCAGGAAAAAACAGATCATAATTTACATATGGCCTGCCTTTGTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCAGGAAAAAACAGATCATAATTTACATATGGCCTGCCTTTGTT  638

seq1  TGCTGGCTTTCTATAAATTCGGACTAAGCCTCCCGCACTGTGGGAAAGGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTTTCTATAAATTCGGACTAAGCCTCCCGCACTGTGGGAAAGGG  688

seq1  TATTAGGTTTCTGTCCCCTCCTCCCTTACCAAGTCCCTCAGCTCCCATGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGTTTCTGTCCCCTCCTCCCTTACCAAGTCCCTCAGCTCCCATGG  738

seq1  TGTGCAGGGAACTAAGGAACTGAGGGTCTGAGCGTTTGAGTAAGCAAGTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGGAACTAAGGAACTGAGGGTCTGAGCGTTTGAGTAAGCAAGTA  788

seq1  ACAAATACTGTTGACTGTGCCTCGGCCTGGAAGCACAAACTGTGCTCACA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACTGTTGACTGTGCCTCGGCCTGGAAGCACAAACTGTGCTCACA  838

seq1  CACACTGGACAACATGAACATACTTCCCAGCCCTAACAAGAAAGGAGCTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGACAACATGAACATACTTCCCAGCCCTAACAAGAAAGGAGCTC  888

seq1  ACGAGGCTGAAGGAGGGTCTCTCTCCTGATACAGGTCAGGCTGCCTGGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGCTGAAGGAGGGTCTCTCTCCTGATACAGGTCAGGCTGCCTGGAA  938

seq1  CTCTGTAGACCATGCTGGCCTTGAATTC  968
      ||||||||||||||||||||||||||||
seq2  CTCTGTAGACCATGCTGGCCTTGAATTC  966