BAC Information

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BAC

Clone NameB6Ng01-288J06
Chromosome11 (Build37)
Map Location 121,450,929 - 121,607,615
singlet/doubletdoublet
Overlap geneTbcd, B3gntl1, Metrnl
Upstream geneThoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Zfp750
Downstream genePtchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288J06.bB6Ng01-288J06.g
ACCGA086205GA086206
length1,0931,157
definitionB6Ng01-288J06.b B6Ng01-288J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,450,929 - 121,452,009)(121,606,465 - 121,607,615)
sequence
gaattcactctgtagaccaagctggccttgaactcagaaatctgcctgcc
tctgtcccaagtgctgagattaaaggcatgcaccaccaccgcccagcttc
ggccttctttaataacaagtcaagaaccaatttgggaactatacgttagt
atcagcatctccccttacacagacccatcatggcagggaaactgaggcag
cgagaacagctgtggttgtagctgtaggagtgtgaggctctggttacata
gtatgtgcgattagaaagtatagaaatggggtgatgctaatgttccattt
tatttgatcatggagagaaaaccatgcaacggtgttgcccacattcaagg
tgggtcttttctcctctgggaagcttctctagaaactctaccagactaaa
tacaatcaagtgacggtctagattatcccacggccaagtgaggctaaggt
gctcctccactggccgtacctgacttgaagtgttcttaaccttacttgga
tctcttgagttcacacaggttctttaagagggctccccaagcttctgtct
tcaggataggtctggagtatcttcttcctagtatccatctggggagatag
cctggacttgccagcatgagaggtgggagggaaggttaggtgctggctat
accctgtttaagatgtagtgaggtcagctgtaagagtcattttggaaaaa
taatgtgttttctttttctttttccatagtgtgcatcttaatagagaagc
tgtcactttccagaatgccatttaaaggggacgccactgtcggtaggtgc
tttcctcaaccacatagataacatttccttacagttattcaagttcaaag
taagagatgaacctgcagggtgggtggatgatgcactatagttttaaagg
atcacagcattgctattgttcttgaaattgctgcaactcctgtcatcctc
ttccagaaagggcagggagtccttctgggctccaccatttgtctggtggc
ttcttgcctgtcaccatttgtacccattcttgagcattttcttgttccca
aggtagatgacagtcttagatgggccagttacctcatttttat
gaattccatgctctccttacctattgaagacaatctttctctagcctttt
gtgttttagccatacttttctttttagcttcacactcaccaagatataaa
cttatggggctgaattaaaccagaaggacgcctgtaaaccttcaggttca
ttttcaccacttgtaggactcaatcctttttggccatgcttcagcctcta
acagaagaccacaaagcttaagactaggggctgcttgcaggtatgcctcc
tgctcactccacccagcccccaaaggacatagctttctccttgagtctct
ctgtggatttgccaggagaagcaaagtaccctatagacctaagaagactt
gttaattccacagcagggtcatcaagatcccagatcaagaaacagatagc
gtacctttggtatgtcaggctcaagtagaagcctaacatcacagtcacct
tttactggaagtaaaaattttactgaaagaagaaacaattatgtaatgta
ttgtgaacctaaatgactatttctgatacacaatctggcctaggaaccag
tcatcttcctgttccctctgtgacttcacttcctgagcctgaggactcag
aggaacttttaagtccctgccttttagtatgcagccttcactcagtgggt
actgtagatatcactagctgaggccgtgtgctcttcaccagcaaggacag
cctatttgcctggcaagcacagggatatctcacatagcaattaaagcaag
agtgtttcctcacaggtgacaatagaaagacaacacttaaggacagagca
gagagcacacccttacacaaagtgtgggtgctgtgaagatcctgtatttt
caggggatgacagctttaaacatcagtctatgattggaaccatctagaag
acatggaactatgaaatggtgcacaagccagcaagatatttcataataaa
actacaaatacacaatctgtgacccagccacactgtttctaaggattaaa
aaatcaacatttaaatatgctcaaagaagaatatccaaacatttgtttac
atactaaatatcaattctattatgttttaataaagcattgccatagaata
ctaggcacacaatgttaaaaggactcccagctggcctttgtacctatatg
ggaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_121450929_121452009
seq2: B6Ng01-288J06.b_44_1136

seq1  GAATTCACTCTGTAGACCAAGCTGGCCTTGAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAAGCTGGCCTTGAACTCAGAAATCTGCCTGCC  50

seq1  TCTGTCCCAAGTGCTGAGATTAAAGGCATGCACCACCACCGCCCAGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCAAGTGCTGAGATTAAAGGCATGCACCACCACCGCCCAGCTTC  100

seq1  GGCCTTCTTTAATAACAAGTCAAGAACCAATTTGGGAACTATACGTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTTTAATAACAAGTCAAGAACCAATTTGGGAACTATACGTTAGT  150

seq1  ATCAGCATCTCCCCTTACACAGACCCATCATGGCAGGGAAACTGAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATCTCCCCTTACACAGACCCATCATGGCAGGGAAACTGAGGCAG  200

seq1  CGAGAACAGCTGTGGTTGTAGCTGTAGGAGTGTGAGGCTCTGGTTACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAACAGCTGTGGTTGTAGCTGTAGGAGTGTGAGGCTCTGGTTACATA  250

seq1  GTATGTGCGATTAGAAAGTATAGAAATGGGGTGATGCTAATGTTCCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCGATTAGAAAGTATAGAAATGGGGTGATGCTAATGTTCCATTT  300

seq1  TATTTGATCATGGAGAGAAAACCATGCAACGGTGTTGCCCACATTCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATCATGGAGAGAAAACCATGCAACGGTGTTGCCCACATTCAAGG  350

seq1  TGGGTCTTTTCTCCTCTGGGAAGCTTCTCTAGAAACTCTACCAGACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTTTCTCCTCTGGGAAGCTTCTCTAGAAACTCTACCAGACTAAA  400

seq1  TACAATCAAGTGACGGTCTAGATTATCCCACGGCCAAGTGAGGCTAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCAAGTGACGGTCTAGATTATCCCACGGCCAAGTGAGGCTAAGGT  450

seq1  GCTCCTCCACTGGCCGTACCTGACTTGAAGTGTTCTTAACCTTACTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCACTGGCCGTACCTGACTTGAAGTGTTCTTAACCTTACTTGGA  500

seq1  TCTCTTGAGTTCACACAGGTTCTTTAAGAGGGCTCCCCAAGCTTCTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGAGTTCACACAGGTTCTTTAAGAGGGCTCCCCAAGCTTCTGTCT  550

seq1  TCAGGATAGGTCTGGAGTATCTTCTTCCTAGTATCCATCTGGGGAGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAGGTCTGGAGTATCTTCTTCCTAGTATCCATCTGGGGAGATAG  600

seq1  CCTGGACTTGCCAGCATGAGAGGTGGGAGGGAAGGTTAGGTGCTGGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACTTGCCAGCATGAGAGGTGGGAGGGAAGGTTAGGTGCTGGCTAT  650

seq1  ACCCTGTTTAAGATGTAGTGAGGTCAGCTGTAAGAGTCATTTTGGAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTTAAGATGTAGTGAGGTCAGCTGTAAGAGTCATTTTGGAAAAA  700

seq1  TAATGTGTTTTCTTTTTCTTTTTCCATAGTGTGCATCTTAATAGAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTTTTCTTTTTCTTTTTCCATAGTGTGCATCTTAATAGAGAAGC  750

seq1  TGTCACTTTCCAGAATGCCATTTAAAGGGGACGCCACTGTCGGTAGGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTTCCAGAATGCCATTTAAAGGGGACGCCACTGTCGGTAGGTGC  800

seq1  TTTCCTCAACCACATAGATAACATTTCCTTACAGTTATTCAAGTTCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAACCACATAGATAACATTTCCTTACAGTTATTCAAGTTCAAAG  850

seq1  TAAGAGATGAACCTGCAGGGTGGGTGGATGATGCACTATAG-TTTAAAGG  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAGAGATGAACCTGCAGGGTGGGTGGATGATGCACTATAGTTTTAAAGG  900

seq1  ATCACAGCATTGCTATTG-TCTTGAAATTGCTGCAAACTCCTGTCATCCT  948
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  ATCACAGCATTGCTATTGTTCTTGAAATTGCTGC-AACTCCTGTCATCCT  949

seq1  CTTCCAGAAAGGGCAGGGAGTCCTTCTGGGCTCCACCA-TTGTCT-GTGG  996
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  CTTCCAGAAAGGGCAGGGAGTCCTTCTGGGCTCCACCATTTGTCTGGTGG  999

seq1  CT--CTGCCTGTCACCA-TTGTACCCAATCCTGAGCATTT--CTGT--CC  1039
      ||   |||||||||||| ||||||||| || |||||||||   |||  ||
seq2  CTTCTTGCCTGTCACCATTTGTACCCATTCTTGAGCATTTTCTTGTTCCC  1049

seq1  CAGGTAGATGACAGTC-TAGAT-GGCCAGGTA-CTCATTTATTAT  1081
       ||||||||||||||| ||||| |||||| || ||||||| ||||
seq2  AAGGTAGATGACAGTCTTAGATGGGCCAGTTACCTCATTT-TTAT  1093

seq1: chr11_121606465_121607615
seq2: B6Ng01-288J06.g_66_1222 (reverse)

seq1  TCTTT-TCATAT-GGTACAAAGG-CAGCTGTGAGTTCTTTTTACA-TGTG  46
      |||||  ||||| |||||||||| |||||| |||| ||||| ||| ||||
seq2  TCTTTCCCATATAGGTACAAAGGCCAGCTGGGAGTCCTTTTAACATTGTG  50

seq1  TG-CTAGTATTCTATTGC-ATGCTTTTATAAAACATAATTAGATGGATAT  94
      || |||||||||||| || |||||||  |||||||||||   || |||||
seq2  TGCCTAGTATTCTATGGCAATGCTTTATTAAAACATAATAGAATTGATAT  100

seq1  TTAGTATGTAA--CAATGTTTGGGATATTCTTCTTTGAGCATTATTTAAT  142
      |||||||||||   ||||||| ||||||||||||||||||||  || |||
seq2  TTAGTATGTAAACAAATGTTT-GGATATTCTTCTTTGAGCATATTTAAAT  149

seq1  GTTGATTTTTTTAATCCTTAGAAACAGTGTGGCTGGGTCACAGATTTGTG  192
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTGA-TTTTTTAATCCTTAGAAACAGTGTGGCTGGGTCACAGA-TTGTG  197

seq1  TATTTGTAGTTTTATTATGAAATATCTTGCTGGCTTGTGCACCATTTCAT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAGTTTTATTATGAAATATCTTGCTGGCTTGTGCACCATTTCAT  247

seq1  AGTTCCATGTCTTCTAGATGGTTCCAATCATAGACTGATGTTTAAAGCTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATGTCTTCTAGATGGTTCCAATCATAGACTGATGTTTAAAGCTG  297

seq1  TCATCCCCTG-AAATACAGGATCTTCACAGCACCCACACTTTGTGTAAGG  341
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCTGAAAATACAGGATCTTCACAGCACCCACACTTTGTGTAAGG  347

seq1  GTGTGCTCTCTGCTCTGTCCTTAAGTGTTGTCTTTCTATTGTCACCTGTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCTCTGCTCTGTCCTTAAGTGTTGTCTTTCTATTGTCACCTGTG  397

seq1  AGGAAACACTCTTGCTTTAATTGCTATGTGAGATATCCCTGTGCTTGCCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACACTCTTGCTTTAATTGCTATGTGAGATATCCCTGTGCTTGCCA  447

seq1  GGCAAATAGGCTGTCCTTGCTGGTGAAGAGCACACGGCCTCAGCTAGTGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATAGGCTGTCCTTGCTGGTGAAGAGCACACGGCCTCAGCTAGTGA  497

seq1  TATCTACAGTACCCACTGAGTGAAGGCTGCATACTAAAAGGCAGGGACTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACAGTACCCACTGAGTGAAGGCTGCATACTAAAAGGCAGGGACTT  547

seq1  AAAAGTTCCTCTGAGTCCTCAGGCTCAGGAAGTGAAGTCACAGAGGGAAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCCTCTGAGTCCTCAGGCTCAGGAAGTGAAGTCACAGAGGGAAC  597

seq1  AGGAAGATGACTGGTTCCTAGGCCAGATTGTGTATCAGAAATAGTCATTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATGACTGGTTCCTAGGCCAGATTGTGTATCAGAAATAGTCATTT  647

seq1  AGGTTCACAATACATTACATAATTGTTTCTTCTTTCAGTAAAATTTTTAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCACAATACATTACATAATTGTTTCTTCTTTCAGTAAAATTTTTAC  697

seq1  TTCCAGTAAAAGGTGACTGTGATGTTAGGCTTCTACTTGAGCCTGACATA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTAAAAGGTGACTGTGATGTTAGGCTTCTACTTGAGCCTGACATA  747

seq1  CCAAAGGTACGCTATCTGTTTCTTGATCTGGGATCTTGATGACCCTGCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGTACGCTATCTGTTTCTTGATCTGGGATCTTGATGACCCTGCTG  797

seq1  TGGAATTAACAAGTCTTCTTAGGTCTATAGGGTACTTTGCTTCTCCTGGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAACAAGTCTTCTTAGGTCTATAGGGTACTTTGCTTCTCCTGGC  847

seq1  AAATCCACAGAGAGACTCAAGGAGAAAGCTATGTCCTTTGGGGGCTGGGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACAGAGAGACTCAAGGAGAAAGCTATGTCCTTTGGGGGCTGGGT  897

seq1  GGAGTGAGCAGGAGGCATACCTGCAAGCAGCCCCTAGTCTTAAGCTTTGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGCAGGAGGCATACCTGCAAGCAGCCCCTAGTCTTAAGCTTTGT  947

seq1  GGTCTTCTGTTAGAGGCTGAAGCATGGCCAAAAAGGATTGAGTCCTACAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTGTTAGAGGCTGAAGCATGGCCAAAAAGGATTGAGTCCTACAA  997

seq1  GTGGTGAAAATGAACCTGAAGGTTTACAGGCGTCCTTCTGGTTTAATTCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAAAATGAACCTGAAGGTTTACAGGCGTCCTTCTGGTTTAATTCA  1047

seq1  GCCCCATAAGTTTATATCTTGGTGAGTGTGAAGCTAAAAAGAAAAGTATG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATAAGTTTATATCTTGGTGAGTGTGAAGCTAAAAAGAAAAGTATG  1097

seq1  GCTAAAACACAAAAGGCTAGAGAAAGATTGTCTTCAATAGGTAAGGAGAG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACACAAAAGGCTAGAGAAAGATTGTCTTCAATAGGTAAGGAGAG  1147

seq1  CATGGAATTC  1151
      ||||||||||
seq2  CATGGAATTC  1157