BAC Information

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BAC

Clone NameB6Ng01-288O03
Chromosome11 (Build37)
Map Location 25,983,400 - 25,984,537
singlet/doubletsinglet
Overlap gene5730522E02Rik
Upstream geneLOC100042328
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288O03.bB6Ng01-288O03.g
ACCGA086432GA086433
length1,2421,162
definitionB6Ng01-288O03.b B6Ng01-288O03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaaggtactaagatatttcatatggaatggaacaagacagctg
ccagcctacattccaaaacagcagaatgtacttcaagaaatagataaagt
aaaaacatttcctagaataaaaatctgacagatttttgccagcagaacaa
gtttattaagtaaaattctaaacgatgtgtatttatgttcacaatactcc
tacaaacaagaaattaatttcagagaaagaataatgaaaatgataaataa
ataaatattataatcaactataaaaaatgaaatagcaagtgcaaataata
agaaaatagagtagagcaaaaaaatcccccaaacaatatcattaatgtga
ggaaagttaagtgttaacttcttgaattatttaagaggaagacagaaata
ttgattagctttagactattgtattttacatatgtgattcacccttgtat
aaatttaacttcctaaattaagcaatacaaaatggacattcaaattggaa
aggaagaggcaaaatgagaaaaaaaatccaaaaaatgtccaaaaaaagca
tagaaaaattatagagacatatagaaaggacaaaatatgatgatagaaat
aactgtatttataagcagttataattaatgtaaatgtatcaagtgataca
aataaaatgtgaagtgttaacgttagggttttttccttaagaccaataaa
tgataaactactttagggaagatcatttgagtctctagctagcaagtaaa
acagtaaaagtttgagcagaaataaatgagatataagaaaaaaatagaaa
attcaagtaaaagaaaagtctagttctttgaaaagattaatatatgaacc
tacaaaatcagaccaaggaaagagatatgtgacataaactataattgcag
ataaaatagtcattgctacttcttggatagtagtcagatgacagtaagca
gaaagtaaagggaacgttgtcacagaattgataccttagatgggatatag
tggctcactgtagacacagcttccaataattcaagttatggtttattctt
taaatgaatcatgattcataaccctattccaaataaggaggaagaaggaa
ccaatagaagactcctaccatcgagaatgggatcttgcctcctgttgggt
gtgaacccaaacatttaaggtaataccttccaaggctttcccagccctct
tacggaaacggaaagagaggaatttctctcgtgaaaaagtca
gaattcctaaatagattaagatgaaagcactaaaagtcattatcatctgt
ctacatcaaacagatttggatgataagatctacattggttccctttaaaa
caccaatcctggagaggcaggatctcaactttattttcacctgtggaaat
aacagcttcagaagatgggttttgttgcagggcagaaggaggtagggaat
taggagaggaggtaaagaccaaaaggggctccttaaacttcttaacagaa
acatttcagcaagtcatccccaaactgcttgcctccaaatagttaaaaat
gtgccagacaaacaccatagggccccgaattggtcgcaaaactaaaggac
aagatgaaaccagtaaatacaattaactctgatgtcctgtcccaaggcta
ccgaaagctaaaataaacttatgacaataaatgtgatgagtctgagtcac
acaaaacagcctgtaagtgcagagtaaaatccaagcctgtgcagttagct
gcttcttccctcttggcctacggaggagaagcacagtcctaatgtcctag
tctcctgacacgtgaacagaatgctcatctcaacagacccaaactgcagg
cagctggctctctgtgctctgtgtgcccacctccagcctcacaggagtgt
cttatattctactgagatctttctaagtcatccctctgggcgttacttca
ctttggaaaggtgctctcacagggaggcattccagtggctctacaaaaac
aaggctggcctgcttctgctggttctagtcgttgcaaaccacaaaatatc
tactctatggtggatgctggggatgtcaaataaaatgtatagaactgata
caaggaaactggacctggggtccaattttccagcaccataaaaacaatag
caagcaaggaaaaatcaataatgggatcacttggaagaaatgggtggcca
ttttatcaatctcatgcatggaatggttgactgggaagattcaatggaca
catggaacaagagatagttatttcaatagataaaaccattttcataatat
acataggctaacattatggataagcaatgtacttaaatcccctttttttc
tgtgtaatcaagctgtcaatcctgaacagtgatacctgacaacgaaaata
aatataccagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25983400_25984537
seq2: B6Ng01-288O03.g_68_1229

seq1  GAATTCCTAAATAGATTAAGATGAAAGCACTAAAAGTCATTATCATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATAGATTAAGATGAAAGCACTAAAAGTCATTATCATCTGT  50

seq1  CTACATCAAACAGATTTGGATGATAAGATCTACATTGGTTCCCTTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCAAACAGATTTGGATGATAAGATCTACATTGGTTCCCTTTAAAA  100

seq1  CACCAATCCTGGAGAGGCAGGATCTCAACTTTATTTTCACCTGTGGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATCCTGGAGAGGCAGGATCTCAACTTTATTTTCACCTGTGGAAAT  150

seq1  AACAGCTTCAGAAGATGGGTTTTGTTGCAGGGCAGAAGGAGGTAGGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTCAGAAGATGGGTTTTGTTGCAGGGCAGAAGGAGGTAGGGAAT  200

seq1  TAGGAGAGGAGGTAAAGACCAAAAGGGGCTCCTTAAACTTCTTAACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGGAGGTAAAGACCAAAAGGGGCTCCTTAAACTTCTTAACAGAA  250

seq1  ACATTTCAGCAAGTCATCCCCAAACTGCTTGCCTCCAAATAGTTAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAGCAAGTCATCCCCAAACTGCTTGCCTCCAAATAGTTAAAAAT  300

seq1  GTGCCAGACAAACACCATAGGGCCCCGAATTGGTCGCAAAACTAAAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGACAAACACCATAGGGCCCCGAATTGGTCGCAAAACTAAAGGAC  350

seq1  AAGATGAAACCAGTAAATACAATTAACTCTGATGTCCTGTCCCAAGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAACCAGTAAATACAATTAACTCTGATGTCCTGTCCCAAGGCTA  400

seq1  CCGAAAGCTAAAATAAACTTATGACAATAAATGTGATGAGTCTGAGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAGCTAAAATAAACTTATGACAATAAATGTGATGAGTCTGAGTCAC  450

seq1  ACAAAACAGCCTGTAAGTGCAGAGTAAAATCCAAGCCTGTGCAGTTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGCCTGTAAGTGCAGAGTAAAATCCAAGCCTGTGCAGTTAGCT  500

seq1  GCTTCTTCCCTCTTGGCCTACGGAGGAGAAGCACAGTCCTAATGTCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCCCTCTTGGCCTACGGAGGAGAAGCACAGTCCTAATGTCCTAG  550

seq1  TCTCCTGACACGTGAACAGAATGCTCATCTCAACAGACCCAAACTGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGACACGTGAACAGAATGCTCATCTCAACAGACCCAAACTGCAGG  600

seq1  CAGCTGGCTCTCTGTGCTCTGTGTGCCCACCTCCAGCCTCACAGGAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCTCTCTGTGCTCTGTGTGCCCACCTCCAGCCTCACAGGAGTGT  650

seq1  CTTATATTCTACTGAGATCTTTCTAAGTCATCCCTCTGGGCGTTACTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTCTACTGAGATCTTTCTAAGTCATCCCTCTGGGCGTTACTTCA  700

seq1  CTTTGGAAAGGTGCTCTCACAGGGAGGCATTCCAGTGGCTCTACAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAAGGTGCTCTCACAGGGAGGCATTCCAGTGGCTCTACAAAAAC  750

seq1  AAGGCTGGCCTGCTTCTGCTGGTTCTAGTCGTTGCAAACCACAAAATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGCCTGCTTCTGCTGGTTCTAGTCGTTGCAAACCACAAAATATC  800

seq1  TACTCTATGGTGGATGCTGGGGATGTCAAAATAAAATGTATAGAACTGAT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACTCTATGGTGGATGCTGGGGATGTC-AAATAAAATGTATAGAACTGAT  849

seq1  ACAAGG-AACTGGACCT-GGGTCCAA-TTTCCAGCACCATAAAAACAATA  897
      |||||| |||||||||| |||||||| |||||||||||||||||||||||
seq2  ACAAGGAAACTGGACCTGGGGTCCAATTTTCCAGCACCATAAAAACAATA  899

seq1  GCAAGCAAGG-AAAATC-ATAAT-GGATCACTT-GAAGAAAT-GGTGGCC  942
      |||||||||| |||||| ||||| ||||||||| |||||||| |||||||
seq2  GCAAGCAAGGAAAAATCAATAATGGGATCACTTGGAAGAAATGGGTGGCC  949

seq1  A-TTTATCAATCTCATGCATGG-ATGGTTGACTGGGAAGA-TCAATGGAC  989
      | |||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  ATTTTATCAATCTCATGCATGGAATGGTTGACTGGGAAGATTCAATGGAC  999

seq1  ACAT-GAAC-AGAGATAGTTATTTC-ATAGATAAA--CATTTTCAT-ATA  1033
      |||| |||| ||||||||||||||| |||||||||  ||||||||| |||
seq2  ACATGGAACAAGAGATAGTTATTTCAATAGATAAAACCATTTTCATAATA  1049

seq1  TACATA-GCTAACA-TAT-GATAAGCAATGTACTAAAATCCCC--TTTAT  1078
      |||||| ||||||| ||| ||||||||||||||| ||||||||  ||| |
seq2  TACATAGGCTAACATTATGGATAAGCAATGTACTTAAATCCCCTTTTTTT  1099

seq1  CTGTGT-ATCAGGCTGTCCATCTCCAACAGTGGATACCTGACAACGAAAA  1127
      |||||| |||| |||||| |||   |||||| ||||||||||||||||||
seq2  CTGTGTAATCAAGCTGTCAATCCTGAACAGT-GATACCTGACAACGAAAA  1148

seq1  TA---ATACCAGAA  1138
      ||   |||||||||
seq2  TAAATATACCAGAA  1162