BAC Information

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BAC

Clone NameB6Ng01-289D10
Chromosome11 (Build37)
Map Location 107,213,467 - 107,357,710
singlet/doubletdoublet
Overlap genePitpnc1, Psmd12
Upstream gene2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
Downstream geneA830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381, Ccdc46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289D10.bB6Ng01-289D10.g
ACCGA086676GA086677
length1,138276
definitionB6Ng01-289D10.b B6Ng01-289D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,356,570 - 107,357,710)(107,213,467 - 107,213,742)
sequence
gaattccaggacagctaggactatacacagagaaaccctgtctggagggg
gaaaaaaaaagagagagcagggtcccatgtatatactaggttggctttca
actaactatgggacaggagcattaaatataagatcctcctgttccccagg
attacaggcaacgctacctcccacatctttgtgtactgtcactgacaaca
gagacacacagcatgtttctgtggttctaccaacatttttatcatataca
ctgtgaacttaaaccaaccaatgcaaatgtagtcttgggggcactgggaa
ttagaccctcagacctttcagtgaaggtctgattagcacaaacaatatta
atgtaactataaacttattaattttggcttggggggatattcaagatagc
ttgggactttttaaattatctaaattttaaatttaaataataaaagccaa
ggggagcacttgggagatagaggtgggaagatggagagagaatacaggaa
ggtagaggaaaccagtctgaggtgagaacttctgtctgagcacataaaca
gtgaaacaattttctcactcccttttcacaaggccactgacacacaacat
gacatgccgtgacagcacactcaaaacttacatccacagagagatccaga
agttgtgccatccttttcattgttatccgagtgtagtacttggccataat
tctgatgttctgtcaggggacacacacaacagttgtcagttccgtagcat
tcacatacgcaccacagacgcagggctgtgcttttctatagctgggttta
aatctcaaaagaaaaactaacccctgaggtataaagactggcttttgcag
ttatttgtgaacttagtattttattttcatgttcattggtgttttgtttg
tgcgagggtgtcagatcccctgaaactgggagttactgacagacttagtg
agctaccacataggtgttatgaaatttaacctaggttcttctggaagaag
cagccagtgctctaaccactaagcactctttagccagcccttgtgaactt
agtatttttatggactgatcatttcttttatttatgagacagtctccatt
aatttccttatgagaatgccatgcatgaaggttaggtg
tttagatcagctctggagtcttagttttgttacatagcctcttattgtta
ttagaaccatacgaagccaagtgtggtggcgcacacctttaatctcggga
ggcagaggcaggcggatttctgagtttgaggccagcctggtctacaaagt
gagttgcaggacagccagggctatacagagaaaccctgtctcgagaaaca
gaaagaaaaaaaaaaagtagaagaagaagaagaagaagaagaaggaggag
gaggaggaggaggaggaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107356570_107357710
seq2: B6Ng01-289D10.b_44_1181 (reverse)

seq1  CACCT-ACCTTCATGCACTTGGGCACTTCTCAATAAAGAAATAAAT-GAG  48
      ||||| |||||||||||    |||| ||||| |||| ||||| ||| |||
seq2  CACCTAACCTTCATGCA---TGGCA-TTCTC-ATAAGGAAATTAATGGAG  45

seq1  ACTGTCTCAATAAAT-AAAGAAATGATCAGTCAAT-AAAATACTAAGTTC  96
      |||||||| |||||| |||||||||||||||| || ||||||||||||||
seq2  ACTGTCTC-ATAAATAAAAGAAATGATCAGTCCATAAAAATACTAAGTTC  94

seq1  ACAAGGGGCTGGGCTAAAGAGGTTGCTTAGTGGTTAAGAGCACTGGCTGC  146
      |||| ||||| ||||||||||  |||||||||||| ||||||||||||||
seq2  ACAA-GGGCT-GGCTAAAGAG--TGCTTAGTGGTT-AGAGCACTGGCTGC  139

seq1  -TCTTCCAGAAG-ACCTAGGTTAAA-TTCATAACACCTATGTGGTAGCTC  193
       ||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TTCTTCCAGAAGAACCTAGGTTAAATTTCATAACACCTATGTGGTAGCTC  189

seq1  ACTAAGTCTGTCAGTAACT-CCAGTTTCAGGGGATCTGACACCCTCGCAC  242
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTAAGTCTGTCAGTAACTCCCAGTTTCAGGGGATCTGACACCCTCGCAC  239

seq1  AAACAAAACACCAATGAACATGAAAATAAAATACTAAGTTCACAAATAAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACACCAATGAACATGAAAATAAAATACTAAGTTCACAAATAAC  289

seq1  TGCAAAAGCCAGTCTTTATACCTCAGGGGTTAGTTTTTCTTTTGAGATTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGCCAGTCTTTATACCTCAGGGGTTAGTTTTTCTTTTGAGATTT  339

seq1  AAACCCAGCTATAGAAAAGCACAGCCCTGCGTCTGTGGTGCGTATGTGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGCTATAGAAAAGCACAGCCCTGCGTCTGTGGTGCGTATGTGAA  389

seq1  TGCTACGGAACTGACAACTGTTGTGTGTGTCCCCTGACAGAACATCAGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACGGAACTGACAACTGTTGTGTGTGTCCCCTGACAGAACATCAGAA  439

seq1  TTATGGCCAAGTACTACACTCGGATAACAATGAAAAGGATGGCACAACTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCCAAGTACTACACTCGGATAACAATGAAAAGGATGGCACAACTT  489

seq1  CTGGATCTCTCTGTGGATGTAAGTTTTGAGTGTGCTGTCACGGCATGTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCTCTCTGTGGATGTAAGTTTTGAGTGTGCTGTCACGGCATGTCA  539

seq1  TGTTGTGTGTCAGTGGCCTTGTGAAAAGGGAGTGAGAAAATTGTTTCACT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTGTCAGTGGCCTTGTGAAAAGGGAGTGAGAAAATTGTTTCACT  589

seq1  GTTTATGTGCTCAGACAGAAGTTCTCACCTCAGACTGGTTTCCTCTACCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTGCTCAGACAGAAGTTCTCACCTCAGACTGGTTTCCTCTACCT  639

seq1  TCCTGTATTCTCTCTCCATCTTCCCACCTCTATCTCCCAAGTGCTCCCCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTATTCTCTCTCCATCTTCCCACCTCTATCTCCCAAGTGCTCCCCT  689

seq1  TGGCTTTTATTATTTAAATTTAAAATTTAGATAATTTAAAAAGTCCCAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTATTATTTAAATTTAAAATTTAGATAATTTAAAAAGTCCCAAG  739

seq1  CTATCTTGAATATCCCCCCAAGCCAAAATTAATAAGTTTATAGTTACATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGAATATCCCCCCAAGCCAAAATTAATAAGTTTATAGTTACATT  789

seq1  AATATTGTTTGTGCTAATCAGACCTTCACTGAAAGGTCTGAGGGTCTAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTTTGTGCTAATCAGACCTTCACTGAAAGGTCTGAGGGTCTAAT  839

seq1  TCCCAGTGCCCCCAAGACTACATTTGCATTGGTTGGTTTAAGTTCACAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGCCCCCAAGACTACATTTGCATTGGTTGGTTTAAGTTCACAGT  889

seq1  GTATATGATAAAAATGTTGGTAGAACCACAGAAACATGCTGTGTGTCTCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGATAAAAATGTTGGTAGAACCACAGAAACATGCTGTGTGTCTCT  939

seq1  GTTGTCAGTGACAGTACACAAAGATGTGGGAGGTAGCGTTGCCTGTAATC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGTGACAGTACACAAAGATGTGGGAGGTAGCGTTGCCTGTAATC  989

seq1  CTGGGGAACAGGAGGATCTTATATTTAATGCTCCTGTCCCATAGTTAGTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAACAGGAGGATCTTATATTTAATGCTCCTGTCCCATAGTTAGTT  1039

seq1  GAAAGCCAACCTAGTATATACATGGGACCCTGCTCTCTCTTTTTTTTTCC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAACCTAGTATATACATGGGACCCTGCTCTCTCTTTTTTTTTCC  1089

seq1  CCCTCCAGACAGGGTTTCTCTGTGTATAGTCCTAGCTGTCCTGGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGACAGGGTTTCTCTGTGTATAGTCCTAGCTGTCCTGGAATTC  1138

seq1: chr11_107213467_107213742
seq2: B6Ng01-289D10.g_72_347

seq1  TTTAGATCAGCTCTGGAGTCTTAGTTTTGTTACATAGCCTCTTATTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATCAGCTCTGGAGTCTTAGTTTTGTTACATAGCCTCTTATTGTTA  50

seq1  TTAGAACCATACGAAGCCAAGTGTGGTGGCGCACACCTTTAATCTCGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCATACGAAGCCAAGTGTGGTGGCGCACACCTTTAATCTCGGGA  100

seq1  GGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGT  150

seq1  GAGTTGCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAGAAACA  200

seq1  GAAAGAAAAAAAAAAAGTAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAAAAAAAAGTAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAG  250

seq1  GAGGAGGAGGAGGAGGAGGAGGAGGA  276
      ||||||||||||||||||||||||||
seq2  GAGGAGGAGGAGGAGGAGGAGGAGGA  276