BAC Information

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BAC

Clone NameB6Ng01-289H11
Chromosome11 (Build37)
Map Location 25,568,846 - 25,721,458
singlet/doubletdoublet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289H11.bB6Ng01-289H11.g
ACCGA086858GA086859
length1,1891,105
definitionB6Ng01-289H11.b B6Ng01-289H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,720,275 - 25,721,458)(25,568,846 - 25,569,926)
sequence
gaattcattcagggcatactctccagactgtttatacagctggaaaatag
ctatggtaacagatgagggggaaaagttaataaggaactccctttaaaaa
ttcagttatctctctgtgtgtttttaaatgtcccctgagcccttattggg
tagcttaaactaaatttttcatggtcgccatattaaatgagctagtaata
aactcactggatgttttaatattttaaatgctgtcttgaatttgaatgca
catttcaaatggcaaaggaggcagcttaatgcctttttaatccactgctc
accatttgctgaagaaaggcatgttggttttccattaaggaatccaagct
tttcatccacaaatttctccttcaccagaactgctcttagtgttttctgg
aattttttacataatcaattcatatccaggcagggtgtattgcttccata
atggtttcagctgacacattacaaaaactgcctatgaggcaagcatggaa
acacacgaagatcatctgaagttagaaacctgtactcatgaagctcccct
tctgtttggacaaaggagaaactcttaccagttctcattccgtggaatct
tgcctttaacaaggtattgcatgaattgaaaggagcttgtttctcttact
gaaaacaaataagagactcgtcagccatctctgagtttctcctctagaag
gatcagagttgggctagggatcaacaattttggttagttcccaggtgata
ctgatgccagtggtcctggggacacagatttgtgaccatccaaggcagag
acctgaaatatggctttggaggcaagtctctcatgattgtaaagattttg
tgatttgcggatcccttcacatctttccatggcttacagtgggagacttg
aaagctattggccctccataactatgcctctagccaactgtgcattgagc
atatttgggaatgcattgttgtgaacagatgcttatttttgtcatttttc
tctaaacaatgcaattactatttacccagcactcgtgctgcactatcagt
aatttagaatgccatagaacacacgggctataaatggggttatagaacat
gcatccagccattatagaccagagtgccaaatacttacagatcagtgcaa
tgggcctctaaattaagtcccttagtgtgccagcgcaag
gaattcaaacctagcaatagctgaaggactgatggtgctcgttacttagc
agtcattttaaatgaagaaccaaggtcctcttggaacagtggtggtttgg
ggacgagtcagttaatgagaaatgcatgtgctatagcagagagtgggtgt
caccaagaggggactcaatatcatagggaaaactacgggcctgtggtata
gtctacacagtgtgtcgacacagtgactagattccagtagttctttactc
tatacagacatagttatatgatcattttactgttataatatgtgcataaa
tcatacttcctatttgttattacaaatcagcctaaagattatgtttttga
acagtgacaggttctccttaccacagctgccaggctgtaaccccattcag
gagatgctcctcattacccaacagtccacacagaagatgagagacacagt
tatgaagggagtctcccttcatcaactctcattcgcatagatgttgttca
caacacaagtaatgcagagtactaaaacagaaaaggaaaacccagagaga
ctgatctcatgaaacatccttctgggccagcaaattggcagtagtggcaa
caacagccattattctcccgtacacctcccatctcttatcaaaaggtagg
cctgtttggtacaagtattggtacctgtacaagctgttacctggaaatat
ctagcaccaaccatgctcagaggcctgcacttctctctctctctctttct
ctctctctctctctctctctctaagctaagaagagaagcaggacagctgc
tgttactccacacttcctctggacagccaaagcctcaacaagcagcatgc
tggaaatgtatacagacaggctcttgattacccctgaagtgaaaccattt
aatttctgaggtaattttttttaagtttattttttctttttcttttctca
atgtgaccacccatttatcattgttaacatcctgggactcttttcaaaaa
cattaactgaggacttttattatgggtacctttgtaattgctgggacttt
ttacttaataatattttaatttcccagcctgctgtagatcagttcaggaa
aaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25720275_25721458
seq2: B6Ng01-289H11.b_46_1234 (reverse)

seq1  CTTG-GCTGGCAC---TAGGGACTTATTTTAAGACCCCCATCGCACTGAT  46
      |||| ||||||||    ||||||||| ||| |||  ||||| ||||||||
seq2  CTTGCGCTGGCACACTAAGGGACTTAATTT-AGAGGCCCATTGCACTGAT  49

seq1  CTGTAAGTATTTGCACCTCTTGTCTATAAT-GCTTGGTGC-TG-TCTAT-  92
      |||||||||||||   |||| ||||||||| ||| | ||| || ||||| 
seq2  CTGTAAGTATTTGGCACTCTGGTCTATAATGGCTGGATGCATGTTCTATA  99

seq1  ACCCCATTTATAGCCCCTGTGTTCCTTATGGCATTTCTAAATTACTGATA  142
      |||||||||||||||| |||||||  ||||||| ||||||||||||||||
seq2  ACCCCATTTATAGCCCGTGTGTTC--TATGGCA-TTCTAAATTACTGATA  146

seq1  GTGCAGCACGAGTGCTGGGTAAATAGTAATTGCATTGTTTAGAGAAAAAT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCACGAGTGCTGGGTAAATAGTAATTGCATTGTTTAGAGAAAAAT  196

seq1  GAC-AAAATAAGCATCTGTTCACAACAATGCATTCCCAAATATGCTCAAT  241
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAATAAGCATCTGTTCACAACAATGCATTCCCAAATATGCTCAAT  246

seq1  GCACAGTTGGCTAGAGGCATAGTTATGGAGGGCCAATAGCTTTCAAGTCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTTGGCTAGAGGCATAGTTATGGAGGGCCAATAGCTTTCAAGTCT  296

seq1  CCCACTGTAAGCCATGGAAAGATGTGAAGGGATCCGCAAATCACAAAATC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGTAAGCCATGGAAAGATGTGAAGGGATCCGCAAATCACAAAATC  346

seq1  TTTACAATCATGAGAGACTTGCCTCCAAAGCCATATTTCAGGTCTCTGCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATCATGAGAGACTTGCCTCCAAAGCCATATTTCAGGTCTCTGCC  396

seq1  TTGGATGGTCACAAATCTGTGTCCCCAGGACCACTGGCATCAGTATCACC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGGTCACAAATCTGTGTCCCCAGGACCACTGGCATCAGTATCACC  446

seq1  TGGGAACTAACCAAAATTGTTGATCCCTAGCCCAACTCTGATCCTTCTAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTAACCAAAATTGTTGATCCCTAGCCCAACTCTGATCCTTCTAG  496

seq1  AGGAGAAACTCAGAGATGGCTGACGAGTCTCTTATTTGTTTTCAGTAAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAACTCAGAGATGGCTGACGAGTCTCTTATTTGTTTTCAGTAAGA  546

seq1  GAAACAAGCTCCTTTCAATTCATGCAATACCTTGTTAAAGGCAAGATTCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGCTCCTTTCAATTCATGCAATACCTTGTTAAAGGCAAGATTCC  596

seq1  ACGGAATGAGAACTGGTAAGAGTTTCTCCTTTGTCCAAACAGAAGGGGAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAATGAGAACTGGTAAGAGTTTCTCCTTTGTCCAAACAGAAGGGGAG  646

seq1  CTTCATGAGTACAGGTTTCTAACTTCAGATGATCTTCGTGTGTTTCCATG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGAGTACAGGTTTCTAACTTCAGATGATCTTCGTGTGTTTCCATG  696

seq1  CTTGCCTCATAGGCAGTTTTTGTAATGTGTCAGCTGAAACCATTATGGAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCATAGGCAGTTTTTGTAATGTGTCAGCTGAAACCATTATGGAA  746

seq1  GCAATACACCCTGCCTGGATATGAATTGATTATGTAAAAAATTCCAGAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACACCCTGCCTGGATATGAATTGATTATGTAAAAAATTCCAGAAA  796

seq1  ACACTAAGAGCAGTTCTGGTGAAGGAGAAATTTGTGGATGAAAAGCTTGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGAGCAGTTCTGGTGAAGGAGAAATTTGTGGATGAAAAGCTTGG  846

seq1  ATTCCTTAATGGAAAACCAACATGCCTTTCTTCAGCAAATGGTGAGCAGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTAATGGAAAACCAACATGCCTTTCTTCAGCAAATGGTGAGCAGT  896

seq1  GGATTAAAAAGGCATTAAGCTGCCTCCTTTGCCATTTGAAATGTGCATTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAAAGGCATTAAGCTGCCTCCTTTGCCATTTGAAATGTGCATTC  946

seq1  AAATTCAAGACAGCATTTAAAATATTAAAACATCCAGTGAGTTTATTACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAGACAGCATTTAAAATATTAAAACATCCAGTGAGTTTATTACT  996

seq1  AGCTCATTTAATATGGCGACCATGAAAAATTTAGTTTAAGCTACCCAATA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTTAATATGGCGACCATGAAAAATTTAGTTTAAGCTACCCAATA  1046

seq1  AGGGCTCAGGGGACATTTAAAAACACACAGAGAGATAACTGAATTTTTAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAGGGGACATTTAAAAACACACAGAGAGATAACTGAATTTTTAA  1096

seq1  AGGGAGTTCCTTATTAACTTTTCCCCCTCATCTGTTACCATAGCTATTTT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTCCTTATTAACTTTTCCCCCTCATCTGTTACCATAGCTATTTT  1146

seq1  CCAGCTGTATAAACAGTCTGGAGAGTATGCCCTGAATGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTATAAACAGTCTGGAGAGTATGCCCTGAATGAATTC  1189

seq1: chr11_25568846_25569926
seq2: B6Ng01-289H11.g_65_1169

seq1  GAATTCAAACCTAGCAATAGCTGAAGGACTGATGGTGCTCGTTACTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCTAGCAATAGCTGAAGGACTGATGGTGCTCGTTACTTAGC  50

seq1  AGTCATTTTAAATGAAGAACCAAGGTCCTCTTGGAACAGTGGTGGTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTTAAATGAAGAACCAAGGTCCTCTTGGAACAGTGGTGGTTTGG  100

seq1  GGACGAGTCAGTTAATGAGAAATGCATGTGCTATAGCAGAGAGTGGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAGTCAGTTAATGAGAAATGCATGTGCTATAGCAGAGAGTGGGTGT  150

seq1  CACCAAGAGGGGACTCAATATCATAGGGAAAACTACGGGCCTGTGGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAGGGGACTCAATATCATAGGGAAAACTACGGGCCTGTGGTATA  200

seq1  GTCTACACAGTGTGTCGACACAGTGACTAGATTCCAGTAGTTCTTTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACAGTGTGTCGACACAGTGACTAGATTCCAGTAGTTCTTTACTC  250

seq1  TATACAGACATAGTTATATGATCATTTTACTGTTATAATATGTGCATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGACATAGTTATATGATCATTTTACTGTTATAATATGTGCATAAA  300

seq1  TCATACTTCCTATTTGTTATTACAAATCAGCCTAAAGATTATGTTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTCCTATTTGTTATTACAAATCAGCCTAAAGATTATGTTTTTGA  350

seq1  ACAGTGACAGGTTCTCCTTACCACAGCTGCCAGGCTGTAACCCCATTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACAGGTTCTCCTTACCACAGCTGCCAGGCTGTAACCCCATTCAG  400

seq1  GAGATGCTCCTCATTACCCAACAGTCCACACAGAAGATGAGAGACACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTCCTCATTACCCAACAGTCCACACAGAAGATGAGAGACACAGT  450

seq1  TATGAAGGGAGTCTCCCTTCATCAACTCTCATTCGCATAGATGTTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGGAGTCTCCCTTCATCAACTCTCATTCGCATAGATGTTGTTCA  500

seq1  CAACACAAGTAATGCAGAGTACTAAAACAGAAAAGGAAAACCCAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAAGTAATGCAGAGTACTAAAACAGAAAAGGAAAACCCAGAGAGA  550

seq1  CTGATCTCATGAAACATCCTTCTGGGCCAGCAAATTGGCAGTAGTGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTCATGAAACATCCTTCTGGGCCAGCAAATTGGCAGTAGTGGCAA  600

seq1  CAACAGCCATTATTCTCCCGTACACCTCCCATCTCTTATCAAAAGGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCATTATTCTCCCGTACACCTCCCATCTCTTATCAAAAGGTAGG  650

seq1  CCTGTTTGGTACAAGTATTGGTACCTGTACAAGCTGTTACCTGGAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTGGTACAAGTATTGGTACCTGTACAAGCTGTTACCTGGAAATAT  700

seq1  CTAGCACCAACCATGCTCAGAGGCCTGCACTTCTCTCTCTCTCTCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCAACCATGCTCAGAGGCCTGCACTTCTCTCTCTCTCTCTTTCT  750

seq1  CTCTCTCTCTCTCTCTCTCTCTAAGCTAAGAAGAGAAGCAGGACAGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTAAGCTAAGAAGAGAAGCAGGACAGCTGC  800

seq1  TGTTACTCCACACTTCCTCTGGACAGCCAAAGCCTCAACAAGCAGCATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTCCACACTTCCTCTGGACAGCCAAAGCCTCAACAAGCAGCATGC  850

seq1  TGGAAATGTATACAGACAGGCTC-TGA-TAACCCTGAAGTGAAAACATT-  897
      ||||||||||||||||||||||| ||| || ||||||||||||| |||| 
seq2  TGGAAATGTATACAGACAGGCTCTTGATTACCCCTGAAGTGAAACCATTT  900

seq1  -AATTCTGAGGTAA-TTTTTTTAAG-TTATTTTT--CTTTTCTTTTCTCA  942
       | ||||||||||| |||||||||| ||||||||   |||||||||||| 
seq2  AATTTCTGAGGTAATTTTTTTTAAGTTTATTTTTTCTTTTTCTTTTCTC-  949

seq1  AATGTGACAACC--ATTATCA-TGTTAACATCCTGGAAC-CTTT--CAAA  986
      |||||||| |||   |||||| |||||||||||||| || ||||   |||
seq2  AATGTGACCACCCATTTATCATTGTTAACATCCTGGGACTCTTTTCAAAA  999

seq1  ACATAAACTGAGGAC-TTTAATAT-GGTA-CTTTGTAATTGCTGGGACTT  1033
      |||| |||||||||| |||| ||| |||| ||||||||||||||||||||
seq2  ACATTAACTGAGGACTTTTATTATGGGTACCTTTGTAATTGCTGGGACTT  1049

seq1  TT--ATTAATAATA-TTTAATT--CCAGCTTG-TGTAGATCAG-TCA-GA  1075
      ||   ||||||||| |||||||  ||||| || |||||||||| ||| ||
seq2  TTTACTTAATAATATTTTAATTTCCCAGCCTGCTGTAGATCAGTTCAGGA  1099

seq1  AAAACC  1081
      ||||||
seq2  AAAACC  1105