BAC Information

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BAC

Clone NameB6Ng01-289K19
Chromosome11 (Build37)
Map Location 49,543,880 - 49,690,161
singlet/doubletdoublet
Overlap geneLOC100040073, Gfpt2, Mapk9
Upstream geneLOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899
Downstream geneRasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289K19.bB6Ng01-289K19.g
ACCGA087008GA087009
length1,121959
definitionB6Ng01-289K19.b B6Ng01-289K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,543,880 - 49,545,013)(49,689,204 - 49,690,161)
sequence
gaattcatccctgtgttgagtgactggccaatgtgttccaggctccagag
acattccatgtccctctggctgggaacgctcaagaagagcttcctggagg
gccttcctgagataaaattggagaagggacaggctttgtgtaagaataga
ctacttcaggcagagtcgagtgtgagagatgagactgaagagtgcttata
gggcaggggagcctggcctatctaaagggaggccatgagaatagttatta
ggtgtcagacatgtcaacttagaaggccttaaatgcgagggggaggaggc
tggacccaagaaacctcagaggcctctgatcagagactcagtcctgctgg
accacctacattctggttccggatgccctgatcctgaccctgtgttctgg
gccagctgcagcctggcttgtgctgggacccacccaggtctgagctcacc
ccagcttttgccttggtcccttttgtgttgctgtaacagaatacccagga
ttaaatcatttcttgtgaacagagtttatatggataatggttctgaaggc
tgtgacatagaagagacgcacatctagtgaaggcctaccaatctctatat
ggaagtcaagcttttatgacctaaccatagagaccccacatctcaacact
gttacatgggagtcgaaagcttttgtggtttttaaacatttatttgtgtc
tgtctgtacatatacacacccatgcactcacatgttcatatgtgtatgga
tgccagaagacaacttgcaggaatcagatctctccttctatgtaggtcct
gggaatcaaactcaggtaagcagggttggcctttaccagctgagccatct
tgttggtctagaagatgaagtttctacacatgaactttagggatacttta
aagcatagcagcctctctgcactgacctcagtagcctcctgggcttctct
accattctgtttcctgtgttcagtatcagtccctatacaagcgtaagctg
attaggccctccttcattctgtcagagtcagtggacagggaaccctggtt
ctctcagtctgctccccatttgcctgacttaaattcagcttctctgaacc
ccagattagggggtctgaact
gaattccacacttcatagattggatgctccaaatccacaaagtcatttga
agggcaggccctcagagcaaacgcagcctccaggcccaactgtgctatca
gtccactggcctggagtgagcctttgccatttctttctgggtgactctaa
gcttctgctctgtcccctacttcttactgtcacagaaaacctaccctcaa
gtcatcttggcagtgagccttttaccccatcacttggatgaggtgcctag
aaatgggcaggaactcagtatgtctggcttagtgctacagggtcattttg
atagatgacaggaggtggcatggggtgcaggtggggcttacctgagaaag
catggtgggccttctgggtgggtagagcacaggtttcatttaaaacaaaa
taaaacaaaacacaacaacaaaaaaaaaaaaaaaacaaaacaaaaaaagg
aagcatagcccagagagatctgagtctctctaggatgcacagctgccgtg
ggcaccatctgagcttaggcttctcctagcctggctcaagtgttttcttt
ctcacaagccactgtgaggacaacacttacttttctaccaacatcacagg
caaacctcttgagaacctcaacttggtttctggagcctttctataaatcg
ccaaactttttgatttaatctttgaaaaggtaagcaaaacttcctttaga
aaaggatgttaatttccatgtgacttataaaggacttttgtttgtttgtt
tgtttgtttgttgtttgttttcaagtcaaggtttcttctgtgtagccctg
gctgtcctggacctcacttctgtagaccaggctggcctcggaactcaaga
aatctcaccttgtcttctgccttccgagtgctgggattaaaggcgtgcac
ccaccaactgggctggactgtaaggacttaagtacctttatgtaaaccat
ccactactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49543880_49545013
seq2: B6Ng01-289K19.b_49_1169

seq1  GAATTCATCCCTGTGTTGAGTGACTGGCCAATGTGTTCCAGGCTCCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCTGTGTTGAGTGACTGGCCAATGTGTTCCAGGCTCCAGAG  50

seq1  ACATTCCATGTCCCTCTGGCTGGGAACGCTCAAGAAGAGCTTCCTGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCATGTCCCTCTGGCTGGGAACGCTCAAGAAGAGCTTCCTGGAGG  100

seq1  GCCTTCCTGAGATAAAATTGGAGAAGGGACAGGCTTTGTGTAAGAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTGAGATAAAATTGGAGAAGGGACAGGCTTTGTGTAAGAATAGA  150

seq1  CTACTTCAGGCAGAGTCGAGTGTGAGAGATGAGACTGAAGAGTGCTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCAGGCAGAGTCGAGTGTGAGAGATGAGACTGAAGAGTGCTTATA  200

seq1  GGGCAGGGGAGCCTGGCCTATCTAAAGGGAGGCCATGAGAATAGTTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGGAGCCTGGCCTATCTAAAGGGAGGCCATGAGAATAGTTATTA  250

seq1  GGTGTCAGACATGTCAACTTAGAAGGCCTTAAATGCGAGGGGGAGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGACATGTCAACTTAGAAGGCCTTAAATGCGAGGGGGAGGAGGC  300

seq1  TGGACCCAAGAAACCTCAGAGGCCTCTGATCAGAGACTCAGTCCTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCAAGAAACCTCAGAGGCCTCTGATCAGAGACTCAGTCCTGCTGG  350

seq1  ACCACCTACATTCTGGTTCCGGATGCCCTGATCCTGACCCTGTGTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTACATTCTGGTTCCGGATGCCCTGATCCTGACCCTGTGTTCTGG  400

seq1  GCCAGCTGCAGCCTGGCTTGTGCTGGGACCCACCCAGGTCTGAGCTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGCAGCCTGGCTTGTGCTGGGACCCACCCAGGTCTGAGCTCACC  450

seq1  CCAGCTTTTGCCTTGGTCCCTTTTGTGTTGCTGTAACAGAATACCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTTGCCTTGGTCCCTTTTGTGTTGCTGTAACAGAATACCCAGGA  500

seq1  TTAAATCATTTCTTGTGAACAGAGTTTATATGGATAATGGTTCTGAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCATTTCTTGTGAACAGAGTTTATATGGATAATGGTTCTGAAGGC  550

seq1  TGTGACATAGAAGAGACGCACATCTAGTGAAGGCCTACCAATCTCTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATAGAAGAGACGCACATCTAGTGAAGGCCTACCAATCTCTATAT  600

seq1  GGAAGTCAAGCTTTTATGACCTAACCATAGAGACCCCACATCTCAACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCAAGCTTTTATGACCTAACCATAGAGACCCCACATCTCAACACT  650

seq1  GTTACATGGGAGTCGAAAGCTTTTGTGGTTTTTAAACATTTATTTGTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATGGGAGTCGAAAGCTTTTGTGGTTTTTAAACATTTATTTGTGTC  700

seq1  TGTCTGTACATATACACACCCATGCACTCACATGTTCATATGTGTATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTACATATACACACCCATGCACTCACATGTTCATATGTGTATGGA  750

seq1  TGCCAGAAGACAACTTGCAGGAATCAGATCTCTCCTTCTATGTAGGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAAGACAACTTGCAGGAATCAGATCTCTCCTTCTATGTAGGTCCT  800

seq1  GGGAATCAAACTCAGGTAAGCAGGGTTGGCCTTTACCAGCTGAGCCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCAAACTCAGGTAAGCAGGGTTGGCCTTTACCAGCTGAGCCATCT  850

seq1  TGTTGGTCTAGAAGATGAAGTTTCTAACACATGAACTTTAGGGGATACTT  900
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  TGTTGGTCTAGAAGATGAAGTTTCT-ACACATGAACTTTA-GGGATACTT  898

seq1  TAAAGCATAGCAGCCTCTCTGCACTGACCTCAGTAGCCTTCCTGGGC-TC  949
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  TAAAGCATAGCAGCCTCTCTGCACTGACCTCAGTAGCC-TCCTGGGCTTC  947

seq1  TCTACCATCCTGTTTCCTGTG-TCAGTAACAGTCCCTATACCAGCGTAAG  998
      |||||||| |||||||||||| |||||| |||||||||||| ||||||||
seq2  TCTACCATTCTGTTTCCTGTGTTCAGTATCAGTCCCTATACAAGCGTAAG  997

seq1  CTGATTAGGCCCTCCTTCA-TCTGTCCAGAGTCAGTGGACAGGGACCCTT  1047
      ||||||||||||||||||| ||||| ||||||||||||||||||| || |
seq2  CTGATTAGGCCCTCCTTCATTCTGT-CAGAGTCAGTGGACAGGGAACCCT  1046

seq1  GTTCCTCCCAGTCTGCT-CCCACTTGCCTGATCCTACTAATGTTTCAACC  1096
      | | ||| ||||||||| |||| ||||||||  ||  |||   |||| | 
seq2  GGTTCTCTCAGTCTGCTCCCCATTTGCCTGA--CT--TAA--ATTCAGC-  1089

seq1  ATACTCTGAACCCCAGATTTTTGGGGGGGTCTGGAACT  1134
       | ||||||||||||||||     |||||||| |||||
seq2  -TTCTCTGAACCCCAGATT----AGGGGGTCT-GAACT  1121

seq1: chr11_49689204_49690161
seq2: B6Ng01-289K19.g_70_1028 (reverse)

seq1  CAGTAGTTGATGTTTTACATATAAGGTTACTTAAAGTCCTTTACAGT-CA  49
      ||||||| |||| |||||||| |||| ||||| |||||| ||||||| ||
seq2  CAGTAGTGGATGGTTTACATA-AAGG-TACTT-AAGTCC-TTACAGTCCA  46

seq1  GGCCAGGTGTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAG-A  98
      | |||| || |  |||||||||||||||||||||||||||| |||||| |
seq2  GCCCAGTTG-GTGGGTGCACGCCTTTAATCCCAGCACTCGGAAGGCAGAA  95

seq1  GAC-AGGTG-GATTTC-TGAGTT-CGAGGCCAGCCTGGTCTACAG-AGTG  143
      ||| ||||| |||||| |||||| ||||||||||||||||||||| ||||
seq2  GACAAGGTGAGATTTCTTGAGTTCCGAGGCCAGCCTGGTCTACAGAAGTG  145

seq1  AGGTCCAGGACAGCCAGGGCTACACAG-AGAAACCCTGACTTGAAAAACA  192
      ||||||||||||||||||||||||||| ||||||| ||||||| ||||||
seq2  AGGTCCAGGACAGCCAGGGCTACACAGAAGAAACCTTGACTTG-AAAACA  194

seq1  AACAAACAAACAAACAAACAAACAAACAAAAAGTCCTTTAT-AGTCACAT  241
      ||| ||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  AAC-AACAAACAAACAAACAAACAAAC-AAAAGTCCTTTATAAGTCACAT  242

seq1  GGAAATTAACATCCTTTTCTAAAGGAAGTTTTGCTTACCTTTTCAAAGAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTAACATCCTTTTCTAAAGGAAGTTTTGCTTACCTTTTCAAAGAT  292

seq1  TAAATCAAAAAGTTTGGCGATTTATAGAAAGGCTCCAGAAACCAAGTTGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAAAAGTTTGGCGATTTATAGAAAGGCTCCAGAAACCAAGTTGA  342

seq1  GGTTCTCAAGAGGTTTGCCTGTGATGTTGGTAGAAAAGTAAGTGTTGTCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAAGAGGTTTGCCTGTGATGTTGGTAGAAAAGTAAGTGTTGTCC  392

seq1  TCACAGTGGCTTGTGAGAAAGAAAACACTTGAGCCAGGCTAGGAGAAGCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGGCTTGTGAGAAAGAAAACACTTGAGCCAGGCTAGGAGAAGCC  442

seq1  TAAGCTCAGATGGTGCCCACGGCAGCTGTGCATCCTAGAGAGACTCAGAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCAGATGGTGCCCACGGCAGCTGTGCATCCTAGAGAGACTCAGAT  492

seq1  CTCTCTGGGCTATGCTTCCTTTTTTTGTTTTGTTTTTTTTTTTTTTTTGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGGCTATGCTTCCTTTTTTTGTTTTGTTTTTTTTTTTTTTTTGT  542

seq1  TGTTGTGTTTTGTTTTATTTTGTTTTAAATGAAACCTGTGCTCTACCCAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTTTGTTTTATTTTGTTTTAAATGAAACCTGTGCTCTACCCAC  592

seq1  CCAGAAGGCCCACCATGCTTTCTCAGGTAAGCCCCACCTGCACCCCATGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGCCCACCATGCTTTCTCAGGTAAGCCCCACCTGCACCCCATGC  642

seq1  CACCTCCTGTCATCTATCAAAATGACCCTGTAGCACTAAGCCAGACATAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTGTCATCTATCAAAATGACCCTGTAGCACTAAGCCAGACATAC  692

seq1  TGAGTTCCTGCCCATTTCTAGGCACCTCATCCAAGTGATGGGGTAAAAGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCTGCCCATTTCTAGGCACCTCATCCAAGTGATGGGGTAAAAGG  742

seq1  CTCACTGCCAAGATGACTTGAGGGTAGGTTTTCTGTGACAGTAAGAAGTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCCAAGATGACTTGAGGGTAGGTTTTCTGTGACAGTAAGAAGTA  792

seq1  GGGGACAGAGCAGAAGCTTAGAGTCACCCAGAAAGAAATGGCAAAGGCTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGAGCAGAAGCTTAGAGTCACCCAGAAAGAAATGGCAAAGGCTC  842

seq1  ACTCCAGGCCAGTGGACTGATAGCACAGTTGGGCCTGGAGGCTGCGTTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGCCAGTGGACTGATAGCACAGTTGGGCCTGGAGGCTGCGTTTG  892

seq1  CTCTGAGGGCCTGCCCTTCAAATGACTTTGTGGATTTGGAGCATCCAATC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGGCCTGCCCTTCAAATGACTTTGTGGATTTGGAGCATCCAATC  942

seq1  TATGAAGTGTGGAATTC  958
      |||||||||||||||||
seq2  TATGAAGTGTGGAATTC  959