BAC Information

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BAC

Clone NameB6Ng01-290I06
Chromosome11 (Build37)
Map Location 31,044,468 - 31,045,577
singlet/doubletsinglet
Overlap genenone
Upstream geneSpnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
Downstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290I06.bB6Ng01-290I06.g
ACCGA087640GA087641
length9851,104
definitionB6Ng01-290I06.b B6Ng01-290I06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaattgctgagtagtactccattgtgtaaatgtacc
acattttctgtatccattcctctgttgagggacacctgggttctttccag
cttctggctattataaataaggctgctatgaacatagtggaacatgtgtc
cttattacaagttggaacatcttctgggtatatgcacaggagaggaattg
ctggattttcctgtagtactatgtctaattttctgaggaactacaagact
gaattccagcgtggttgtaccagcttgcaatccaatcagcaatagaggag
tgtccctttttctccacatcctcaccagtatctgctgtcacctgaatttt
tttaaaagatttatttatttattatatgtaagtacactgtagctgtcttc
agacactccagaagagggggtcagatcttgttacagatggttgtgagcca
ccatgtggttgctgggatttgaactccggaccttcggaagagcagtcggg
tgctcttacccactgagccatctcacctgaattttttatcttagccattc
tgactggtgtaaggtggaatctcagggttgttttgatttgcatttccctg
atgattaaggatcttgaacatttttttcaggtgcttctcagccactcggt
attcctcagttgagaattcttagtttagctctgtaccctatttttaattg
ggttatttggttttctggagtccattttctttagttcttcatatatatag
gatattagtcccctatccgatttaggactggtaaagatccttttccaatc
tgttggtggcctttttgtcttactgacagtgtcttttgctttacagaagc
tctgcaattttatgaggtcccatttgcccattcttgttcttacagcacaa
gccattgctgttttgttcaggaatttttcccctgtgcccatatcttgagg
ttcttccccattttttttcctctataagtttcatt
gaattctatctagtatttatttcagaaagataatagttctgtgatttaaa
gtaaaaacatgactatatatttattacagattatggattttactattaaa
ttatcttcttttcatattcagtgctttgcaacttaaaagataaaggtttt
ttaaaataccctttaaaaattcccataattcctgtattccagccctcaag
tgagggagctctgcttaaaatagacactcctgaagcattctgtttccaac
atgacagctgggttgtcatcattcataatttgtactaacagtatattgtg
ttttttgtttaactttttttatcaagttcagttactcacaatagtactgt
cattgactctggagatgcattccaacagagaagggaccctgcttcccagc
tagcctttctgccttttcattttgggactacgtgtatacctttcaaccaa
aaactataacctcttacacgtgtgcatgtgcatgcacacacagtgtagag
aagaggtccagtgctgcctgtagcactgggtacgaggagactggaacagt
cctcttcctgagaaataagaatgcctgatgaaatactaaaaaacaaagta
aactttgtacttcttggctaatatgaatgtaaaaagggactcagcccaga
gagaagtgagcaggaacccaaaaaggtaagcttgcctgaggtgcttgtct
agttagggaagcttgacttaacattctcagtcaagggtcagaatgactag
cctagggcttggatggaatgaatctaatgcagatcctttcaataaagatg
agctactctctcaatagaaccataacctaaaaataagtttctactgacct
cagcccctgaaaataactgtagtcctgaacttgggagacaaaacaaatat
ctagaatgtgtaattaaaaccaagccctttattcagatttcagctgggat
ctgtatatcggaagtaataaagacttgagttgagaatggaatatagaaac
tcataaattgtagttttcctttgtgtaagacaacatccatctcttgcctc
atgcattccacaggtagagttctgaggccaattgaatagctactcacaga
aaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_31044468_31045577
seq2: B6Ng01-290I06.g_66_1169

seq1  GAATTCTATCTAGTATTTATTTCAGAAAGATAATAGTTCTGTGATTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTAGTATTTATTTCAGAAAGATAATAGTTCTGTGATTTAAA  50

seq1  GTAAAAACATGACTATATATTTATTACAGATTATGGATTTTACTATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACATGACTATATATTTATTACAGATTATGGATTTTACTATTAAA  100

seq1  TTATCTTCTTTTCATATTCAGTGCTTTGCAACTTAAAAGATAAAGGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCTTTTCATATTCAGTGCTTTGCAACTTAAAAGATAAAGGTTTT  150

seq1  TTAAAATACCCTTTAAAAATTCCCATAATTCCTGTATTCCAGCCCTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATACCCTTTAAAAATTCCCATAATTCCTGTATTCCAGCCCTCAAG  200

seq1  TGAGGGAGCTCTGCTTAAAATAGACACTCCTGAAGCATTCTGTTTCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGCTCTGCTTAAAATAGACACTCCTGAAGCATTCTGTTTCCAAC  250

seq1  ATGACAGCTGGGTTGTCATCATTCATAATTTGTACTAACAGTATATTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCTGGGTTGTCATCATTCATAATTTGTACTAACAGTATATTGTG  300

seq1  TTTTTTGTTTAACTTTTTTTATCAAGTTCAGTTACTCACAATAGTACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTAACTTTTTTTATCAAGTTCAGTTACTCACAATAGTACTGT  350

seq1  CATTGACTCTGGAGATGCATTCCAACAGAGAAGGGACCCTGCTTCCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACTCTGGAGATGCATTCCAACAGAGAAGGGACCCTGCTTCCCAGC  400

seq1  TAGCCTTTCTGCCTTTTCATTTTGGGACTACGTGTATACCTTTCAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTCTGCCTTTTCATTTTGGGACTACGTGTATACCTTTCAACCAA  450

seq1  AAACTATAACCTCTTACACGTGTGCATGTGCATGCACACACAGTGTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAACCTCTTACACGTGTGCATGTGCATGCACACACAGTGTAGAG  500

seq1  AAGAGGTCCAGTGCTGCCTGTAGCACTGGGTACGAGGAGACTGGAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTCCAGTGCTGCCTGTAGCACTGGGTACGAGGAGACTGGAACAGT  550

seq1  CCTCTTCCTGAGAAATAAGAATGCCTGATGAAATACTAAAAAACAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTGAGAAATAAGAATGCCTGATGAAATACTAAAAAACAAAGTA  600

seq1  AACTTTGTACTTCTTGGCTAATATGAATGTAAAAAGGGACTCAGCCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTACTTCTTGGCTAATATGAATGTAAAAAGGGACTCAGCCCAGA  650

seq1  GAGAAGTGAGCAGGAACCCAAAAAGGTAAGCTTGCCTGAGGTGCTTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGAGCAGGAACCCAAAAAGGTAAGCTTGCCTGAGGTGCTTGTCT  700

seq1  AGTTAGGGAAGCTTGACTTAACATTCTCAGTCAAGGGTCAGAATGACTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGGAAGCTTGACTTAACATTCTCAGTCAAGGGTCAGAATGACTAG  750

seq1  CCTAGGGCTTGGATGGAATGAATCTAATGCAGATCCTTTCAATAAAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGCTTGGATGGAATGAATCTAATGCAGATCCTTTCAATAAAGATG  800

seq1  AGCTACTCTCTCAATAGAACCATAACCTAAAAATAAGTTTCTACTGACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTCTCTCAATAGAACCATAACCTAAAAATAAGTTTCTACTGACCT  850

seq1  CAGCCCCTGAAAATAACTGTAGTCCTGAACTTGGGAGACAAAACAAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGCCCCTGAAAATAACTGTAGTCCTGAACTTGGGAGACAAAACAAATA-  899

seq1  TCTAGAATGTGTAATTAAAACCAAG-CCTTTATTCAGATTTCAGCTGGGA  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTAGAATGTGTAATTAAAACCAAGCCCTTTATTCAGATTTCAGCTGGGA  949

seq1  TCTGTAATATCGGGAAAGT-ATAAAGACTTGAGTTGAGAATGGAATATAA  998
      ||||| |||||||  |||| |||||||||||||||||||||||||||| |
seq2  TCTGT-ATATCGG--AAGTAATAAAGACTTGAGTTGAGAATGGAATAT-A  995

seq1  GAAACTCATAAATTGTAGTTTTCCTTTTGTTGTAAGAACACCTTCATCTC  1048
      |||||||||||||||||||||||||||   |||||||  || | ||||||
seq2  GAAACTCATAAATTGTAGTTTTCCTTT--GTGTAAGACAACATCCATCTC  1043

seq1  -TGGCTCATGCATTTCCCACAGGTAGAGTTCTGAGGGCAA-TGAGTAGCT  1096
       || ||||||||||  |||||||||||||||||||| ||| ||| |||||
seq2  TTGCCTCATGCATT--CCACAGGTAGAGTTCTGAGGCCAATTGAATAGCT  1091

seq1  ACTTCACAGAAAAC  1110
      || |||||||||||
seq2  AC-TCACAGAAAAC  1104