BAC Information

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BAC

Clone NameB6Ng01-290I17
Chromosome11 (Build37)
Map Location 71,056,950 - 71,058,082
singlet/doubletsinglet
Overlap geneNlrp1c
Upstream geneAlox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b
Downstream geneLOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290I17.bB6Ng01-290I17.g
ACCGA087662GA087663
length1,1361,148
definitionB6Ng01-290I17.b B6Ng01-290I17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgtagacaacaatcaagtcccttgctagatggcttaaataat
tttggtttaaaaaaaagagaggtctttttgtacttgtttgattttgtaca
ctcacaataattgacaaacgtgtgttttagatttgatggtagaattaaag
tgaagcaagactgtgcacaggggaatagcgaatgaatttcatctacaagt
gaaggagattaataaactgcagctcatgaataagcctcaatggtttgaga
ggtccctatatccactgtgctctaacagtttagggaagtcagctcaagga
cacagtctgtagtaatgggaagccctggttccagtaatgtgaagcaaaga
tgatatgctatgtggaccatcttgctgcatcctgagctatagataaacag
gagcatctaatgaagaaagtaatagggtgatcatgaattttaaagtcaag
atgtaagtctggggatacaaatgggcaatgattataatactccaatacct
gaacactctcacatatggaaaggaatagatcttactgagtatcaaaggac
agaattaagaagaaatatttggacactgggtatggtggcaaacatcttca
atcctagcacttcggaggttgaggcaagcatatctttgtgagttcacggc
ctgggcttgatacatagagaaacactgtctggaactatccactcacactg
agaagtgaacaccacatctgttatatgaagcttctaaacctcttgaaatc
agaaaactagaaatgggacttggccttagtgatggaataaagaacagtag
cagattggtaaaatgtaggtagacttggatcctattatttggtaacttta
aaaagcataacagcatacaaaggcttgagatggagatcctggaagcaatg
aatttcaaaacaaaaacctggtttccaaatgtgggatgtctccttaggag
ttgtgggcagggaagtcttgcagatccctacggcaatacaggctcatgtc
attctgattagtttcccatatgagctagtagataaggcattatttgtgaa
tacaccacacttctagaacatatggggttagaagaattcaagctggaagg
tgaattgaaatctctccctgctgccaagcccctcag
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaatatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcataccctagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
tgggaggagctagagaaagtagccaggagctaaagggatctgcaacctat
agtgacacattatgagctaacagtacccgagctctgactctagctgcata
tatatcaaaggattgcttagtcgcatcactgaagagagtccaatgatctg
caacttaattgccagtacaggaatacatgacaaaaggggaagtgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71056950_71058082
seq2: B6Ng01-290I17.b_45_1180

seq1  GAATTCCTTGTAGACAACAATCAAGTCCCTTGCTAGATGGCTTAAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTAGACAACAATCAAGTCCCTTGCTAGATGGCTTAAATAAT  50

seq1  TTTGGTTTAAAAAAAAGAGAGGTCTTTTTGTACTTGTTTGATTTTGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTAAAAAAAAGAGAGGTCTTTTTGTACTTGTTTGATTTTGTACA  100

seq1  CTCACAATAATTGACAAACGTGTGTTTTAGATTTGATGGTAGAATTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATAATTGACAAACGTGTGTTTTAGATTTGATGGTAGAATTAAAG  150

seq1  TGAAGCAAGACTGTGCACAGGGGAATAGCGAATGAATTTCATCTACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAGACTGTGCACAGGGGAATAGCGAATGAATTTCATCTACAAGT  200

seq1  GAAGGAGATTAATAAACTGCAGCTCATGAATAAGCCTCAATGGTTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGATTAATAAACTGCAGCTCATGAATAAGCCTCAATGGTTTGAGA  250

seq1  GGTCCCTATATCCACTGTGCTCTAACAGTTTAGGGAAGTCAGCTCAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTATATCCACTGTGCTCTAACAGTTTAGGGAAGTCAGCTCAAGGA  300

seq1  CACAGTCTGTAGTAATGGGAAGCCCTGGTTCCAGTAATGTGAAGCAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTGTAGTAATGGGAAGCCCTGGTTCCAGTAATGTGAAGCAAAGA  350

seq1  TGATATGCTATGTGGACCATCTTGCTGCATCCTGAGCTATAGATAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGCTATGTGGACCATCTTGCTGCATCCTGAGCTATAGATAAACAG  400

seq1  GAGCATCTAATGAAGAAAGTAATAGGGTGATCATGAATTTTAAAGTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTAATGAAGAAAGTAATAGGGTGATCATGAATTTTAAAGTCAAG  450

seq1  ATGTAAGTCTGGGGATACAAATGGGCAATGATTATAATACTCCAATACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTCTGGGGATACAAATGGGCAATGATTATAATACTCCAATACCT  500

seq1  GAACACTCTCACATATGGAAAGGAATAGATCTTACTGAGTATCAAAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTCTCACATATGGAAAGGAATAGATCTTACTGAGTATCAAAGGAC  550

seq1  AGAATTAAGAAGAAATATTTGGACACTGGGTATGGTGGCAAACATCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAGAAGAAATATTTGGACACTGGGTATGGTGGCAAACATCTTCA  600

seq1  ATCCTAGCACTTCGGAGGTTGAGGCAAGCATATCTTTGTGAGTTCACGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGCACTTCGGAGGTTGAGGCAAGCATATCTTTGTGAGTTCACGGC  650

seq1  CTGGGCTTGATACATAGAGAAACACTGTCTGGAACTATCCACTCACACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTGATACATAGAGAAACACTGTCTGGAACTATCCACTCACACTG  700

seq1  AGAAGTGAACACCACATCTGTTATATGAAGCTTCTAAACCTCTTGAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGAACACCACATCTGTTATATGAAGCTTCTAAACCTCTTGAAATC  750

seq1  AGAAAACTAGAAATGGGACTTGGCCTTAGTGATGGAATAAAGAACAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTAGAAATGGGACTTGGCCTTAGTGATGGAATAAAGAACAGTAG  800

seq1  CAGATTGGTAAAATGTAGGTAGACTTGGATCCTATTATTTGGTAACTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGGTAAAATGTAGGTAGACTTGGATCCTATTATTTGGTAACTTTA  850

seq1  AAAAGCATAACAGCATAC-AAGGCTTGAGATGGAGATCCTGGAAGCAATG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAAGCATAACAGCATACAAAGGCTTGAGATGGAGATCCTGGAAGCAATG  900

seq1  AATTTCAAAACAAAAACCTGG-TTCCAAATGTGGGATGTCTCCTTAGGAG  948
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATTTCAAAACAAAAACCTGGTTTCCAAATGTGGGATGTCTCCTTAGGAG  950

seq1  TTTGTGGGCAGGGAAGTCTTGCAGATCCCTACGGCAATACAGGCTCATGT  998
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGTGGGCAGGGAAGTCTTGCAGATCCCTACGGCAATACAGGCTCATGT  999

seq1  CATTCTGATTAGTTTCCCATATGAGCTAGTAGATAAGGCATTATTGTTGA  1048
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  CATTCTGATTAGTTTCCCATATGAGCTAGTAGATAAGGCATTATTTGTGA  1049

seq1  ATACACCACACTTCTTAGACATATGGTG-TAG-AGAATTCAAGCTGG-AG  1095
      |||||||||||||||   |||||||| | ||| |||||||||||||| ||
seq2  ATACACCACACTTCTAGAACATATGGGGTTAGAAGAATTCAAGCTGGAAG  1099

seq1  GTGAATTGGAATCTTTCTTCTTGTTGCCAAG-CCCTCAG  1133
      |||||||| ||||  ||| | || ||||||| |||||||
seq2  GTGAATTGAAATC--TCTCCCTGCTGCCAAGCCCCTCAG  1136