BAC Information

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BAC

Clone NameB6Ng01-291L14
Chromosome11 (Build37)
Map Location 6,124,070 - 6,125,217
singlet/doubletsinglet
Overlap geneNpc1l1
Upstream geneKremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173
Downstream geneLOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291L14.bB6Ng01-291L14.g
ACCGA088539GA088540
length1,146601
definitionB6Ng01-291L14.b B6Ng01-291L14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtgagtctgtgcagaactttgtctaatgaggatgttgagtat
gaagaacccctcccttcttacctggtactcaagaacaaagatgaagatgt
tgtcagctcccacagccagcaccaggaaaggtaccacttgaatgatgacc
agagaggaggggacacccaggtaggagtagaagcccatggcagccacgac
tgctcccagcacaacagccaccccacctaggcccagagtagccttggaat
ccacctgcaattcagtgaggagggctggctaccaggacacctgcccagac
cctttgtactctccagggtggctgaggagtgggcaggcatcattggtgct
cacacaccacccacctcaatgaagaacccacatctaagtctctatgctaa
accatgctctcaggggcaagcccatggaaccaaagaatgcaggggtacct
ggctgcaccttcccagaactgcattgcatggccttttaaatggtagcttt
gcatgtagacagttggaatatattagagagcaggaagaaagcctttcaac
atagaacacacccaagaaacgctacccttcaagggattccatctggatgt
gtccaacttgctattttaatgtgcccacactcgggaagctttgaaaagcc
ttctggaggtgtcctaggctctgagtcactctcactgtgtccctcttgct
ctcaccgcaactcggctccatctggagtagctgcccagggccagggagat
gtacaggaagacgataaggtagctgatggcaaagacaggcaggtcctgga
tggtagtgcgattgatctcgtcctccagagaacgctgcaagcacacagcc
agctcacggaccacatactgagtggccacacactctaggaatgaactgca
ggagcctctaacacaagcgccacagctaggcacaggtgttcactgcccgg
gggccagtcaggaacaagtagagccagtttgtagatttgactggaataag
acccacaccattagggaattgcaagcatagaaccagggactctgcaaggt
ccctacctcagctggagacgcatctggacttgtcagctgttcttctcttg
gagatgcatttctttcaagaaagcctcctccaagagcttgcgtggg
gaattccagaaaaggtggaacagaaacttagaatacccaagatacaagat
acaatttgcgaaacacgcgaaactcaagaagaacgaagaccaaagtgtgg
acactttgccccttcttagaactgggaacaaaacacccatggaaggagtt
acagagacaaagtttggagctgtgacaaaaggatggaccatctagagacc
atctgccatacccagggatccatcccataatcagcctccaaacgctgaca
acattgcatacactagcaagattttgctgaaaggaccctgatatagctgt
ctcttgtgaggctatgccggggcctagcaaacacagaagtggatgctcac
agtcagctattggatggaacacagggcccccaatggaggagctagagaaa
ttacccaaggagctaaagggaactgcaaccctataggtggaacaacaata
tgaactaaccagtaccccccagagctcgtgtctctagctgcttatgtatc
agaagatggcctggtcggccatcactggaaagagaggccccttggtcgtg
caaactttatatgccccagtataggggaatgccagggccaagaagtggga
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6124070_6125217
seq2: B6Ng01-291L14.b_49_1194

seq1  GAATTCCAGTGAGTCTGTGCAGAACTTTGTCTAATGAGGATGTTGAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAGTCTGTGCAGAACTTTGTCTAATGAGGATGTTGAGTAT  50

seq1  GAAGAACCCCTCCCTTCTTACCTGGTACTCAAGAACAAAGATGAAGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACCCCTCCCTTCTTACCTGGTACTCAAGAACAAAGATGAAGATGT  100

seq1  TGTCAGCTCCCACAGCCAGCACCAGGAAAGGTACCACTTGAATGATGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCTCCCACAGCCAGCACCAGGAAAGGTACCACTTGAATGATGACC  150

seq1  AGAGAGGAGGGGACACCCAGGTAGGAGTAGAAGCCCATGGCAGCCACGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGGGGACACCCAGGTAGGAGTAGAAGCCCATGGCAGCCACGAC  200

seq1  TGCTCCCAGCACAACAGCCACCCCACCTAGGCCCAGAGTAGCCTTGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCAGCACAACAGCCACCCCACCTAGGCCCAGAGTAGCCTTGGAAT  250

seq1  CCACCTGCAATTCAGTGAGGAGGGCTGGCTACCAGGACACCTGCCCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCAATTCAGTGAGGAGGGCTGGCTACCAGGACACCTGCCCAGAC  300

seq1  CCTTTGTACTCTCCAGGGTGGCTGAGGAGTGGGCAGGCATCATTGGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTACTCTCCAGGGTGGCTGAGGAGTGGGCAGGCATCATTGGTGCT  350

seq1  CACACACCACCCACCTCAATGAAGAACCCACATCTAAGTCTCTATGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCACCCACCTCAATGAAGAACCCACATCTAAGTCTCTATGCTAA  400

seq1  ACCATGCTCTCAGGGGCAAGCCCATGGAACCAAAGAATGCAGGGGTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTCTCAGGGGCAAGCCCATGGAACCAAAGAATGCAGGGGTACCT  450

seq1  GGCTGCACCTTCCCAGAACTGCATTGCATGGCCTTTTAAATGGTAGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCACCTTCCCAGAACTGCATTGCATGGCCTTTTAAATGGTAGCTTT  500

seq1  GCATGTAGACAGTTGGAATATATTAGAGAGCAGGAAGAAAGCCTTTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAGACAGTTGGAATATATTAGAGAGCAGGAAGAAAGCCTTTCAAC  550

seq1  ATAGAACACACCCAAGAAACGCTACCCTTCAAGGGATTCCATCTGGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACACACCCAAGAAACGCTACCCTTCAAGGGATTCCATCTGGATGT  600

seq1  GTCCAACTTGCTATTTTAATGTGCCCACACTCGGGAAGCTTTGAAAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACTTGCTATTTTAATGTGCCCACACTCGGGAAGCTTTGAAAAGCC  650

seq1  TTCTGGAGGTGTCCTAGGCTCTGAGTCACTCTCACTGTGTCCCTCTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGGTGTCCTAGGCTCTGAGTCACTCTCACTGTGTCCCTCTTGCT  700

seq1  CTCACCGCAACTCGGCTCCATCTGGAGTAGCTGCCCAGGGCCAGGGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCGCAACTCGGCTCCATCTGGAGTAGCTGCCCAGGGCCAGGGAGAT  750

seq1  GTACAGGAAGACGATAAGGTAGCTGATGGCAAAGACAGGCAGGTCCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGAAGACGATAAGGTAGCTGATGGCAAAGACAGGCAGGTCCTGGA  800

seq1  TGGTAGTGCGATTGATCTCGTCCTCCAGAGAACGCTGCAAGCACACAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTGCGATTGATCTCGTCCTCCAGAGAACGCTGCAAGCACACAGCC  850

seq1  AGCTCACGGACCACATACTGAGTGGCCACACACTCTAGGAATGAACTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACGGACCACATACTGAGTGGCCACACACTCTAGGAATGAACTGCA  900

seq1  GGAGCCTCTAACACAAGCGCCACAGCTAGGCACAGGTGTTCACTGCCC-G  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAGCCTCTAACACAAGCGCCACAGCTAGGCACAGGTGTTCACTGCCCGG  950

seq1  GGGCCAGTCAGGAACAAGTAGAGCCAGTTTGTAGATTTGACTGGAAT-AG  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGCCAGTCAGGAACAAGTAGAGCCAGTTTGTAGATTTGACTGGAATAAG  1000

seq1  ACCCACACCATTAGGG-ATTGCAAGCATAGAACCAGGGACTCTGCAGGGC  1047
      |||||||||||||||| ||||||||||||||||||||||||||||| || 
seq2  ACCCACACCATTAGGGAATTGCAAGCATAGAACCAGGGACTCTGCAAGGT  1050

seq1  CCCTACCTCAGCTGAGAACGCAATCTGGAACTTGTCAGCTGTGCTTCTCT  1097
      ||||||||||||||   |||| |||||| ||||||||||||| |||||||
seq2  CCCTACCTCAGCTGGAGACGC-ATCTGG-ACTTGTCAGCTGTTCTTCTCT  1098

seq1  GGAAGGATTGCATTTCCTTCAAGAAAGCCTCCTCCCAGAGCTTGGCGTGG  1147
       | ||   |||||||| |||||||||||||||||| ||||||| ||||||
seq2  TGGAG--ATGCATTTCTTTCAAGAAAGCCTCCTCCAAGAGCTT-GCGTGG  1145

seq1  G  1148
      |
seq2  G  1146