BAC Information

Click to search

BAC

Clone NameB6Ng01-292N11
Chromosome15 (Build37)11 (Build37)
Map Location 45,759,774 - 45,760,66273,137,076 - 73,137,135
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292N11.bB6Ng01-292N11.g
ACCGA089376GA089377
length889683
definitionB6Ng01-292N11.b B6Ng01-292N11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,759,774 - 45,760,662)(73,137,076 - 73,137,135)
sequence
gaattctttattcttgtcaccatacacacaatataaatttttcagatttg
tgttgattccagaagaattgctgtaaatgccttgttcctattgttatttg
tcattaatgtttgtcaaattatagggcagatattctgttcattttctggt
cagaacccatcctcaactatcatatggtcatctttgcaagtaccacttca
gatcaatatgactcaggtcacattttataaacctggagactagcatcact
cttcttatcaggttgcagtatgactgcgaatatataatatcaagcatctt
aattaaaactgaaccaaaaatttacaattgcaagccatcttattattcta
atatcagatctatcacgtgaattacattttctttctttctagagcaataa
gagctctcttttgtttcttatgcagtttaactctacatattctgtatcac
aactaagtattatcaaatgtaatttaggtctgaattgctgaggtgttcac
agtttcagagaaccatcaatatttaagtgatgtactgtgactgcttgtcc
catatatttctggcattcctgtcaggtataatttttaacaagtggttcca
gtgcatctgatttaacacatgctttaattaatgcatgatttttagtagaa
aacttaaagcacattagtgaataaaaaacattacacaactgtggtgtttt
cattagcttcaatttttatctacattgaatgtattcagtttattttataa
acagaaatgctgtgaaatgtccccacaacacataattatgatgcaagaat
agaagattcctactggacagctgttgtaatcacctcagcacgaattgacc
tctctctctctctctctctctctctctctctctctctct

gaattctgtttagctttgtaccccattttttaattgttttatttgatatt
ctggagtctaacttcaatagttctttgtatgtttcaatattaaccctcta
ttggatgtagaattagtaaagatctcttcccaatctgtaggttgcctttt
tgtcctgtagataatatcctctcccttacagaagcttttcagtttcatga
tatctcacttgttaattgttgatttcagagcctgaaacattggctttctg
gttcaagaaattttaacctgttatagtgtgtttgaggctatatcccacta
tctcttctattagactcagtgtatctggttttactatgaggtccttgacc
ctcttggacttgcaatttgtataaggagataaaaatggatcaatttgcat
cttctacaagcagaccaccatttagaccaacatcatttgttgaagatgat
ttcttttttccactttaaggttttcgcttctttgtcaaggatcaagtgtc
tgttggtgcttgggtttatttctgggtcttgaattctttgtcattgtctg
tttaccaacaccatgcagtttttaatcactattgctttgtagtacagcta
aagtttaggaacggtgattcccccagaagtttttttttttttttttttgg
tttttggtctttggttgttttggttttgggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_45759774_45760662
seq2: B6Ng01-292N11.b_46_934

seq1  GAATTCTTTATTCTTGTCACCATACACACAATATAAATTTTTCAGATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTCTTGTCACCATACACACAATATAAATTTTTCAGATTTG  50

seq1  TGTTGATTCCAGAAGAATTGCTGTAAATGCCTTGTTCCTATTGTTATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTCCAGAAGAATTGCTGTAAATGCCTTGTTCCTATTGTTATTTG  100

seq1  TCATTAATGTTTGTCAAATTATAGGGCAGATATTCTGTTCATTTTCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATGTTTGTCAAATTATAGGGCAGATATTCTGTTCATTTTCTGGT  150

seq1  CAGAACCCATCCTCAACTATCATATGGTCATCTTTGCAAGTACCACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCATCCTCAACTATCATATGGTCATCTTTGCAAGTACCACTTCA  200

seq1  GATCAATATGACTCAGGTCACATTTTATAAACCTGGAGACTAGCATCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATATGACTCAGGTCACATTTTATAAACCTGGAGACTAGCATCACT  250

seq1  CTTCTTATCAGGTTGCAGTATGACTGCGAATATATAATATCAAGCATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATCAGGTTGCAGTATGACTGCGAATATATAATATCAAGCATCTT  300

seq1  AATTAAAACTGAACCAAAAATTTACAATTGCAAGCCATCTTATTATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACTGAACCAAAAATTTACAATTGCAAGCCATCTTATTATTCTA  350

seq1  ATATCAGATCTATCACGTGAATTACATTTTCTTTCTTTCTAGAGCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGATCTATCACGTGAATTACATTTTCTTTCTTTCTAGAGCAATAA  400

seq1  GAGCTCTCTTTTGTTTCTTATGCAGTTTAACTCTACATATTCTGTATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCTTTTGTTTCTTATGCAGTTTAACTCTACATATTCTGTATCAC  450

seq1  AACTAAGTATTATCAAATGTAATTTAGGTCTGAATTGCTGAGGTGTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTATTATCAAATGTAATTTAGGTCTGAATTGCTGAGGTGTTCAC  500

seq1  AGTTTCAGAGAACCATCAATATTTAAGTGATGTACTGTGACTGCTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAGAACCATCAATATTTAAGTGATGTACTGTGACTGCTTGTCC  550

seq1  CATATATTTCTGGCATTCCTGTCAGGTATAATTTTTAACAAGTGGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTCTGGCATTCCTGTCAGGTATAATTTTTAACAAGTGGTTCCA  600

seq1  GTGCATCTGATTTAACACATGCTTTAATTAATGCATGATTTTTAGTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCTGATTTAACACATGCTTTAATTAATGCATGATTTTTAGTAGAA  650

seq1  AACTTAAAGCACATTAGTGAATAAAAAACATTACACAACTGTGGTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAGCACATTAGTGAATAAAAAACATTACACAACTGTGGTGTTTT  700

seq1  CATTAGCTTCAATTTTTATCTACATTGAATGTATTCAGTTTATTTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTCAATTTTTATCTACATTGAATGTATTCAGTTTATTTTATAA  750

seq1  ACAGAAATGCTGTGAAATGTCCCCACAACACATAATTATGATGCAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGCTGTGAAATGTCCCCACAACACATAATTATGATGCAAGAAT  800

seq1  AGAAGATTCCTACTGGACAGCTGTTGTAATCACCTCAGCACGAATTGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTCCTACTGGACAGCTGTTGTAATCACCTCAGCACGAATTGACC  850

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  889
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  889


seq1: chr11_73137076_73137135
seq2: B6Ng01-292N11.g_698_748 (reverse)

seq1  AAACCCTCTAGAAAAAACCAAAAAACAAACAAACACCAAAAACCAAAAAA  50
      ||||||       ||||||  ||||||| |||| ||||||||||||||||
seq2  AAACCC-------AAAACC--AAAACAACCAAAGACCAAAAACCAAAAAA  41

seq1  AAAAAAAAAA  60
      ||||||||||
seq2  AAAAAAAAAA  51


| Home | SequenceCutter | Blast | Download |